Medical diagnostic testing can be made significantly more efficient using pooled testing protocols. These typically require a sparse infection signal and use either binary or real-valued entries of O(1). However, existing methods do not allow for inferring viral loads which span many orders of magnitude. We develop a message passing algorithm coupled with a PCR (Polymerase Chain Reaction) specific noise function to allow accurate inference of realistic viral load signals. This work is in the non-adaptive setting and could open the possibility of efficient screening where viral load determination is clinically important.
With the increasing prevalence of open and connected products, cybersecurity has become a serious issue in safety-critical domains such as the automotive industry. As a result, regulatory bodies have become more stringent in their requirements for cybersecurity, necessitating security assurance for products developed in these domains. In response, companies have implemented new or modified processes to incorporate security into their product development lifecycle, resulting in a large amount of evidence being created to support claims about the achievement of a certain level of security. However, managing evidence is not a trivial task, particularly for complex products and systems. This paper presents a qualitative interview study conducted in six companies on the maturity of managing security evidence in safety-critical organizations. We find that the current maturity of managing security evidence is insufficient for the increasing requirements set by certification authorities and standardization bodies. Organisations currently fail to identify relevant artifacts as security evidence and manage this evidence on an organizational level. One part of the reason are educational gaps, the other a lack of processes. The impact of AI on the management of security evidence is still an open question
Test smells can pose difficulties during testing activities, such as poor maintainability, non-deterministic behavior, and incomplete verification. Existing research has extensively addressed test smells in automated software tests but little attention has been given to smells in natural language tests. While some research has identified and catalogued such smells, there is a lack of systematic approaches for their removal. Consequently, there is also a lack of tools to automatically identify and remove natural language test smells. This paper introduces a catalog of transformations designed to remove seven natural language test smells and a companion tool implemented using Natural Language Processing (NLP) techniques. Our work aims to enhance the quality and reliability of natural language tests during software development. The research employs a two-fold empirical strategy to evaluate its contributions. First, a survey involving 15 software testing professionals assesses the acceptance and usefulness of the catalog's transformations. Second, an empirical study evaluates our tool to remove natural language test smells by analyzing a sample of real-practice tests from the Ubuntu OS. The results indicate that software testing professionals find the transformations valuable. Additionally, the automated tool demonstrates a good level of precision, as evidenced by a F-Measure rate of 83.70%
Detection of malignant lesions on mammography images is extremely important for early breast cancer diagnosis. In clinical practice, images are acquired from two different angles, and radiologists can fully utilize information from both views, simultaneously locating the same lesion. However, for automatic detection approaches such information fusion remains a challenge. In this paper, we propose a new model called MAMM-Net, which allows the processing of both mammography views simultaneously by sharing information not only on an object level, as seen in existing works, but also on a feature level. MAMM-Net's key component is the Fusion Layer, based on deformable attention and designed to increase detection precision while keeping high recall. Our experiments show superior performance on the public DDSM dataset compared to the previous state-of-the-art model, while introducing new helpful features such as lesion annotation on pixel-level and classification of lesions malignancy.
Maintaining temporal stability is crucial in multi-agent trajectory prediction. Insufficient regularization to uphold this stability often results in fluctuations in kinematic states, leading to inconsistent predictions and the amplification of errors. In this study, we introduce a framework called Multi-Agent Trajectory prediction via neural interaction Energy (MATE). This framework assesses the interactive motion of agents by employing neural interaction energy, which captures the dynamics of interactions and illustrates their influence on the future trajectories of agents. To bolster temporal stability, we introduce two constraints: inter-agent interaction constraint and intra-agent motion constraint. These constraints work together to ensure temporal stability at both the system and agent levels, effectively mitigating prediction fluctuations inherent in multi-agent systems. Comparative evaluations against previous methods on four diverse datasets highlight the superior prediction accuracy and generalization capabilities of our model.
Estimating heterogeneous treatment effects (HTEs) is crucial for precision medicine. While multiple studies can improve the generalizability of results, leveraging them for estimation is statistically challenging. Existing approaches often assume identical HTEs across studies, but this may be violated due to various sources of between-study heterogeneity, including differences in study design, study populations, and data collection protocols, among others. To this end, we propose a framework for multi-study HTE estimation that accounts for between-study heterogeneity in the nuisance functions and treatment effects. Our approach, the multi-study R-learner, extends the R-learner to obtain principled statistical estimation with machine learning (ML) in the multi-study setting. It involves a data-adaptive objective function that links study-specific treatment effects with nuisance functions through membership probabilities, which enable information to be borrowed across potentially heterogeneous studies. The multi-study R-learner framework can combine data from randomized controlled trials, observational studies, or a combination of both. It's easy to implement and flexible in its ability to incorporate ML for estimating HTEs, nuisance functions, and membership probabilities. In the series estimation framework, we show that the multi-study R-learner is asymptotically normal and more efficient than the R-learner when there is between-study heterogeneity in the propensity score model under homoscedasticity. We illustrate using cancer data that the proposed method performs favorably compared to existing approaches in the presence of between-study heterogeneity.
Following unprecedented success on the natural language tasks, Transformers have been successfully applied to several computer vision problems, achieving state-of-the-art results and prompting researchers to reconsider the supremacy of convolutional neural networks (CNNs) as {de facto} operators. Capitalizing on these advances in computer vision, the medical imaging field has also witnessed growing interest for Transformers that can capture global context compared to CNNs with local receptive fields. Inspired from this transition, in this survey, we attempt to provide a comprehensive review of the applications of Transformers in medical imaging covering various aspects, ranging from recently proposed architectural designs to unsolved issues. Specifically, we survey the use of Transformers in medical image segmentation, detection, classification, reconstruction, synthesis, registration, clinical report generation, and other tasks. In particular, for each of these applications, we develop taxonomy, identify application-specific challenges as well as provide insights to solve them, and highlight recent trends. Further, we provide a critical discussion of the field's current state as a whole, including the identification of key challenges, open problems, and outlining promising future directions. We hope this survey will ignite further interest in the community and provide researchers with an up-to-date reference regarding applications of Transformer models in medical imaging. Finally, to cope with the rapid development in this field, we intend to regularly update the relevant latest papers and their open-source implementations at \url{//github.com/fahadshamshad/awesome-transformers-in-medical-imaging}.
We present a large-scale study on unsupervised spatiotemporal representation learning from videos. With a unified perspective on four recent image-based frameworks, we study a simple objective that can easily generalize all these methods to space-time. Our objective encourages temporally-persistent features in the same video, and in spite of its simplicity, it works surprisingly well across: (i) different unsupervised frameworks, (ii) pre-training datasets, (iii) downstream datasets, and (iv) backbone architectures. We draw a series of intriguing observations from this study, e.g., we discover that encouraging long-spanned persistency can be effective even if the timespan is 60 seconds. In addition to state-of-the-art results in multiple benchmarks, we report a few promising cases in which unsupervised pre-training can outperform its supervised counterpart. Code is made available at //github.com/facebookresearch/SlowFast
Human doctors with well-structured medical knowledge can diagnose a disease merely via a few conversations with patients about symptoms. In contrast, existing knowledge-grounded dialogue systems often require a large number of dialogue instances to learn as they fail to capture the correlations between different diseases and neglect the diagnostic experience shared among them. To address this issue, we propose a more natural and practical paradigm, i.e., low-resource medical dialogue generation, which can transfer the diagnostic experience from source diseases to target ones with a handful of data for adaptation. It is capitalized on a commonsense knowledge graph to characterize the prior disease-symptom relations. Besides, we develop a Graph-Evolving Meta-Learning (GEML) framework that learns to evolve the commonsense graph for reasoning disease-symptom correlations in a new disease, which effectively alleviates the needs of a large number of dialogues. More importantly, by dynamically evolving disease-symptom graphs, GEML also well addresses the real-world challenges that the disease-symptom correlations of each disease may vary or evolve along with more diagnostic cases. Extensive experiment results on the CMDD dataset and our newly-collected Chunyu dataset testify the superiority of our approach over state-of-the-art approaches. Besides, our GEML can generate an enriched dialogue-sensitive knowledge graph in an online manner, which could benefit other tasks grounded on knowledge graph.
Few-shot Knowledge Graph (KG) completion is a focus of current research, where each task aims at querying unseen facts of a relation given its few-shot reference entity pairs. Recent attempts solve this problem by learning static representations of entities and references, ignoring their dynamic properties, i.e., entities may exhibit diverse roles within task relations, and references may make different contributions to queries. This work proposes an adaptive attentional network for few-shot KG completion by learning adaptive entity and reference representations. Specifically, entities are modeled by an adaptive neighbor encoder to discern their task-oriented roles, while references are modeled by an adaptive query-aware aggregator to differentiate their contributions. Through the attention mechanism, both entities and references can capture their fine-grained semantic meanings, and thus render more expressive representations. This will be more predictive for knowledge acquisition in the few-shot scenario. Evaluation in link prediction on two public datasets shows that our approach achieves new state-of-the-art results with different few-shot sizes.
Multi-relation Question Answering is a challenging task, due to the requirement of elaborated analysis on questions and reasoning over multiple fact triples in knowledge base. In this paper, we present a novel model called Interpretable Reasoning Network that employs an interpretable, hop-by-hop reasoning process for question answering. The model dynamically decides which part of an input question should be analyzed at each hop; predicts a relation that corresponds to the current parsed results; utilizes the predicted relation to update the question representation and the state of the reasoning process; and then drives the next-hop reasoning. Experiments show that our model yields state-of-the-art results on two datasets. More interestingly, the model can offer traceable and observable intermediate predictions for reasoning analysis and failure diagnosis, thereby allowing manual manipulation in predicting the final answer.