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With the advance of large language models (LLMs), the research field of LLM applications becomes more and more popular and the idea of constructing pipelines to accomplish complex tasks by stacking LLM API calls come true. However, this kind of methods face two limitations: narrow information coverage and low fault tolerance. In this work, we propose a novel method called ALLIES. Given an input query, ALLIES leverages LLMs to iteratively generate new queries related to the original query, enabling an iterative reasoning process. By iteratively refining and expanding the scope of the original query, ALLIES captures and utilizes hidden knowledge that may not be directly obtainable through retrieval. We take zero-shot open-domain question answering (ODQA) as an application scene and evaluate ALLIES on the widely-used benchmarks, such as NQ, WebQ and TriviaQA. The experimental results demonstrate that ALLIES significantly outperforms other zero-shot baselines, indicating its effectiveness in tackling those challenges. Our code is available in //github.com/microsoft/SimXNS/tree/main/ALLIES.

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The advent of increasingly powerful language models has raised expectations for language-based interactions. However, controlling these models is a challenge, emphasizing the need to be able to investigate the feasibility and value of their application. We present PROMISE, a framework that facilitates the development of complex language-based interactions with information systems. Its use of state machine modeling concepts enables model-driven, dynamic prompt orchestration across hierarchically nested states and transitions. This improves the control of the behavior of language models and thus enables their effective and efficient use. We show the benefits of PROMISE in the context of application scenarios within health information systems and demonstrate its ability to handle complex interactions.

Multimodal large language models (MLLMs) have gained significant attention due to their strong multimodal understanding capability. However, existing works rely heavily on modality-specific encoders, which usually differ in architecture and are limited to common modalities. In this paper, we present OneLLM, an MLLM that aligns eight modalities to language using a unified framework. We achieve this through a unified multimodal encoder and a progressive multimodal alignment pipeline. In detail, we first train an image projection module to connect a vision encoder with LLM. Then, we build a universal projection module (UPM) by mixing multiple image projection modules and dynamic routing. Finally, we progressively align more modalities to LLM with the UPM. To fully leverage the potential of OneLLM in following instructions, we also curated a comprehensive multimodal instruction dataset, including 2M items from image, audio, video, point cloud, depth/normal map, IMU and fMRI brain activity. OneLLM is evaluated on 25 diverse benchmarks, encompassing tasks such as multimodal captioning, question answering and reasoning, where it delivers excellent performance. Code, data, model and online demo are available at //github.com/csuhan/OneLLM

In the realm of large language models (LLMs), enhancing instruction-following capability often involves curating expansive training data. This is achieved through two primary schemes: i) Scaling-Inputs: Amplifying (input, output) pairs per task instruction, aiming for better instruction adherence. ii) Scaling Input-Free Tasks: Enlarging tasks, each composed of an (instruction, output) pair (without requiring a separate input anymore). However, LLMs under Scaling-Inputs tend to be overly sensitive to inputs, leading to misinterpretation or non-compliance with instructions. Conversely, Scaling Input-Free Tasks demands a substantial number of tasks but is less effective in instruction following when dealing with instances in Scaling-Inputs. This work introduces MUFFIN, a new scheme of instruction-following dataset curation. Specifically, we automatically Scale Tasks per Input by diversifying these tasks with various input facets. Experimental results across four zero-shot benchmarks, spanning both Scaling-Inputs and Scaling Input-Free Tasks schemes, reveal that LLMs, at various scales, trained on MUFFIN generally demonstrate superior instruction-following capabilities compared to those trained on the two aforementioned schemes.

Large vision-language models (LVLMs) have demonstrated their incredible capability in image understanding and response generation. However, this rich visual interaction also makes LVLMs vulnerable to adversarial examples. In this paper, we formulate a novel and practical gray-box attack scenario that the adversary can only access the visual encoder of the victim LVLM, without the knowledge of its prompts (which are often proprietary for service providers and not publicly available) and its underlying large language model (LLM). This practical setting poses challenges to the cross-prompt and cross-model transferability of targeted adversarial attack, which aims to confuse the LVLM to output a response that is semantically similar to the attacker's chosen target text. To this end, we propose an instruction-tuned targeted attack (dubbed InstructTA) to deliver the targeted adversarial attack on LVLMs with high transferability. Initially, we utilize a public text-to-image generative model to "reverse" the target response into a target image, and employ GPT-4 to infer a reasonable instruction $\boldsymbol{p}^\prime$ from the target response. We then form a local surrogate model (sharing the same visual encoder with the victim LVLM) to extract instruction-aware features of an adversarial image example and the target image, and minimize the distance between these two features to optimize the adversarial example. To further improve the transferability, we augment the instruction $\boldsymbol{p}^\prime$ with instructions paraphrased from an LLM. Extensive experiments demonstrate the superiority of our proposed method in targeted attack performance and transferability.

Pre-trained large language models have significantly improved code generation. As these models scale up, there is an increasing need for the output to handle more intricate tasks and to be appropriately specialized to particular domains. Here, we target bioinformatics due to the amount of specialized domain knowledge, algorithms, and data operations this discipline requires. We present BioCoder, a benchmark developed to evaluate large language models (LLMs) in generating bioinformatics-specific code. BioCoder spans a broad spectrum of the field and covers cross-file dependencies, class declarations, and global variables. It incorporates 1026 Python functions and 1243 Java methods extracted from GitHub, along with 253 examples from the Rosalind Project, all pertaining to bioinformatics. Using topic modeling we show that overall coverage of the included code is representative of the full spectrum of bioinformatics calculations. BioCoder incorporates a fuzz-testing framework for evaluation. We have applied it to evaluate many models including InCoder, CodeGen, CodeGen2, SantaCoder, StarCoder, StarCoder+, InstructCodeT5+, GPT-3.5, and GPT-4. Furthermore, we finetuned StarCoder, demonstrating how our dataset can effectively enhance the performance of LLMs on our benchmark (by >15% in terms of Pass@K in certain prompt configurations and always >3%). The results highlight two key aspects of successful models: (1) Successful models accommodate a long prompt (> ~2600 tokens) with full context, for functional dependencies. (2) They contain specific domain knowledge of bioinformatics, beyond just general coding knowledge. This is evident from the performance gain of GPT-3.5/4 compared to the smaller models on the benchmark (50% vs up to ~25%). Our dataset, benchmark, Docker images, and scripts required for testing are all available at //github.com/gersteinlab/biocoder.

The rapid development of large language models (LLMs), such as ChatGPT, has revolutionized the efficiency of creating programming tutorials. LLMs can be instructed with text prompts to generate comprehensive text descriptions of code snippets. However, the lack of transparency in the end-to-end generation process has hindered the understanding of model behavior and limited user control over the generated results. To tackle this challenge, we introduce a novel approach that breaks down the programming tutorial creation task into actionable steps. By employing the tree-of-thought method, LLMs engage in an exploratory process to generate diverse and faithful programming tutorials. We then present SPROUT, an authoring tool equipped with a series of interactive visualizations that empower users to have greater control and understanding of the programming tutorial creation process. A formal user study demonstrated the effectiveness of SPROUT, showing that our tool assists users to actively participate in the programming tutorial creation process, leading to more reliable and customizable results. By providing users with greater control and understanding, SPROUT enhances the user experience and improves the overall quality of programming tutorial. A free copy of this paper and all supplemental materials are available at //osf.io/uez2t/?view_only=5102e958802341daa4f86.

The advent of large language models, enabling flexibility through instruction-driven approaches, has revolutionized many traditional generative tasks, but large models for 3D data, particularly in comprehensively handling 3D shapes with other modalities, are still under-explored. By achieving instruction-based shape generations, versatile multimodal generative shape models can significantly benefit various fields like 3D virtual construction and network-aided design. In this work, we present ShapeGPT, a shape-included multi-modal framework to leverage strong pre-trained language models to address multiple shape-relevant tasks. Specifically, ShapeGPT employs a word-sentence-paragraph framework to discretize continuous shapes into shape words, further assembles these words for shape sentences, as well as integrates shape with instructional text for multi-modal paragraphs. To learn this shape-language model, we use a three-stage training scheme, including shape representation, multimodal alignment, and instruction-based generation, to align shape-language codebooks and learn the intricate correlations among these modalities. Extensive experiments demonstrate that ShapeGPT achieves comparable performance across shape-relevant tasks, including text-to-shape, shape-to-text, shape completion, and shape editing.

Large language models (LLMs) have demonstrated impressive capabilities in natural language processing. However, their internal mechanisms are still unclear and this lack of transparency poses unwanted risks for downstream applications. Therefore, understanding and explaining these models is crucial for elucidating their behaviors, limitations, and social impacts. In this paper, we introduce a taxonomy of explainability techniques and provide a structured overview of methods for explaining Transformer-based language models. We categorize techniques based on the training paradigms of LLMs: traditional fine-tuning-based paradigm and prompting-based paradigm. For each paradigm, we summarize the goals and dominant approaches for generating local explanations of individual predictions and global explanations of overall model knowledge. We also discuss metrics for evaluating generated explanations, and discuss how explanations can be leveraged to debug models and improve performance. Lastly, we examine key challenges and emerging opportunities for explanation techniques in the era of LLMs in comparison to conventional machine learning models.

The emergence of large language models (LLMs) has substantially influenced natural language processing, demonstrating exceptional results across various tasks. In this study, we employ ``Introspective Tips" to facilitate LLMs in self-optimizing their decision-making. By introspectively examining trajectories, LLM refines its policy by generating succinct and valuable tips. Our method enhances the agent's performance in both few-shot and zero-shot learning situations by considering three essential scenarios: learning from the agent's past experiences, integrating expert demonstrations, and generalizing across diverse games. Importantly, we accomplish these improvements without fine-tuning the LLM parameters; rather, we adjust the prompt to generalize insights from the three aforementioned situations. Our framework not only supports but also emphasizes the advantage of employing LLM in in-contxt decision-making. Experiments involving over 100 games in TextWorld illustrate the superior performance of our approach.

Pre-trained language representation models, such as BERT, capture a general language representation from large-scale corpora, but lack domain-specific knowledge. When reading a domain text, experts make inferences with relevant knowledge. For machines to achieve this capability, we propose a knowledge-enabled language representation model (K-BERT) with knowledge graphs (KGs), in which triples are injected into the sentences as domain knowledge. However, too much knowledge incorporation may divert the sentence from its correct meaning, which is called knowledge noise (KN) issue. To overcome KN, K-BERT introduces soft-position and visible matrix to limit the impact of knowledge. K-BERT can easily inject domain knowledge into the models by equipped with a KG without pre-training by-self because it is capable of loading model parameters from the pre-trained BERT. Our investigation reveals promising results in twelve NLP tasks. Especially in domain-specific tasks (including finance, law, and medicine), K-BERT significantly outperforms BERT, which demonstrates that K-BERT is an excellent choice for solving the knowledge-driven problems that require experts.

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