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Inverse protein folding is a fundamental task in computational protein design, which aims to design protein sequences that fold into the desired backbone structures. While the development of machine learning algorithms for this task has seen significant success, the prevailing approaches, which predominantly employ a discriminative formulation, frequently encounter the error accumulation issue and often fail to capture the extensive variety of plausible sequences. To fill these gaps, we propose Bridge-IF, a generative diffusion bridge model for inverse folding, which is designed to learn the probabilistic dependency between the distributions of backbone structures and protein sequences. Specifically, we harness an expressive structure encoder to propose a discrete, informative prior derived from structures, and establish a Markov bridge to connect this prior with native sequences. During the inference stage, Bridge-IF progressively refines the prior sequence, culminating in a more plausible design. Moreover, we introduce a reparameterization perspective on Markov bridge models, from which we derive a simplified loss function that facilitates more effective training. We also modulate protein language models (PLMs) with structural conditions to precisely approximate the Markov bridge process, thereby significantly enhancing generation performance while maintaining parameter-efficient training. Extensive experiments on well-established benchmarks demonstrate that Bridge-IF predominantly surpasses existing baselines in sequence recovery and excels in the design of plausible proteins with high foldability. The code is available at //github.com/violet-sto/Bridge-IF.

The emergence of models like GPTs, Claude, LLaMA, and Qwen has reshaped AI applications, presenting vast new opportunities across industries. Yet, the integration of tabular data remains notably underdeveloped, despite its foundational role in numerous real-world domains. This gap is critical for three main reasons. First, database or data warehouse data integration is essential for advanced applications; second, the vast and largely untapped resource of tabular data offers immense potential for analysis; and third, the business intelligence domain specifically demands adaptable, precise solutions that many current LLMs may struggle to provide. In response, we introduce TableGPT2, a model rigorously pre-trained and fine-tuned with over 593.8K tables and 2.36M high-quality query-table-output tuples, a scale of table-related data unprecedented in prior research. This extensive training enables TableGPT2 to excel in table-centric tasks while maintaining strong general language and coding abilities. One of TableGPT2's key innovations is its novel table encoder, specifically designed to capture schema-level and cell-level information. This encoder strengthens the model's ability to handle ambiguous queries, missing column names, and irregular tables commonly encountered in real-world applications. Similar to visual language models, this pioneering approach integrates with the decoder to form a robust large multimodal model. We believe the results are compelling: over 23 benchmarking metrics, TableGPT2 achieves an average performance improvement of 35.20% in the 7B model and 49.32% in the 72B model over prior benchmark-neutral LLMs, with robust general-purpose capabilities intact.

Chain of thought (CoT) is a reasoning framework that can enhance the performance of Large Language Models (LLMs) on complex inference tasks. In particular, among various studies related to CoT, multi-path inference stands out as a simple yet effective improvement. However, there is no optimal setting for the number of inference paths. Therefore, we have to increase the number of inference paths to obtain better results, which in turn increases the inference cost. To address this limitation, we can utilize question-related role templates to guide LLMs into relevant roles, thereby increasing the possibility of correct inferences for each path and further reducing dependence on the number of inference paths while improving reasoning accuracy. However, placing LLMs into specific roles may reduce their reasoning diversity and performance on a few tasks where role dependence is low. To alleviate the excessive immersion of the LLM into a specific role, we propose Nash CoT by constructing a competitive system on each path that balances the generation from role-specific LLMs' and the general LLMs' generation, thereby ensuring both effective role adoption and diversity in LLM generation further maintaining the performance of multi-path inference while reducing the requirement of the number of inference paths. We evaluate Nash CoT across various inference tasks, including Arabic Reasoning, Commonsense Question Answering, and Symbolic Inference, achieving results that are comparable to or better than those of multi-path CoT with the equal number of inference paths.

Numerous industrial sectors necessitate models capable of providing robust forecasts across various horizons. Despite the recent strides in crafting specific architectures for time-series forecasting and developing pre-trained universal models, a comprehensive examination of their capability in accommodating varied-horizon forecasting during inference is still lacking. This paper bridges this gap through the design and evaluation of the Elastic Time-Series Transformer (ElasTST). The ElasTST model incorporates a non-autoregressive design with placeholders and structured self-attention masks, warranting future outputs that are invariant to adjustments in inference horizons. A tunable version of rotary position embedding is also integrated into ElasTST to capture time-series-specific periods and enhance adaptability to different horizons. Additionally, ElasTST employs a multi-scale patch design, effectively integrating both fine-grained and coarse-grained information. During the training phase, ElasTST uses a horizon reweighting strategy that approximates the effect of random sampling across multiple horizons with a single fixed horizon setting. Through comprehensive experiments and comparisons with state-of-the-art time-series architectures and contemporary foundation models, we demonstrate the efficacy of ElasTST's unique design elements. Our findings position ElasTST as a robust solution for the practical necessity of varied-horizon forecasting.

The real time analysis and secure transmission of electrocardiogram (ECG) signals are critical for ensuring both effective medical diagnosis and patient data privacy. In this study, we developed a real time ECG monitoring system that integrates chaotic encryption to protect the integrity and confidentiality of ECG signals during acquisition, transmission, and storage. By leveraging the logistic map as the chaotic function for encryption, our system offers a highly secure framework that dynamically encrypts ECG signals without adding significant latency. To validate the system's reliability, we applied a series of security tests. The results demonstrate that chaotic encryption is effective in enhancing data security, as evidenced by high entropy values and strong key sensitivity, ensuring protection against common cryptographic attacks. Additionally, the system's real time disease detection model, based on deep learning, operates seamlessly with encrypted data, providing accurate diagnosis without compromising security. Our findings indicate that chaotic encryption, paired with real time analysis, is a powerful method for protecting sensitive medical data, making this approach particularly relevant for telemedicine and remote patient monitoring applications. The success of this system highlights its potential for broader application to other biomedical signals, providing a secure infrastructure for the future of digital health.

The rise of mobile devices equipped with numerous sensors, such as LiDAR and cameras, has spurred the adoption of multi-modal deep intelligence for distributed sensing tasks, such as smart cabins and driving assistance. However, the arrival times of mobile sensory data vary due to modality size and network dynamics, which can lead to delays (if waiting for slower data) or accuracy decline (if inference proceeds without waiting). Moreover, the diversity and dynamic nature of mobile systems exacerbate this challenge. In response, we present a shift to \textit{opportunistic} inference for asynchronous distributed multi-modal data, enabling inference as soon as partial data arrives. While existing methods focus on optimizing modality consistency and complementarity, known as modal affinity, they lack a \textit{computational} approach to control this affinity in open-world mobile environments. AdaFlow pioneers the formulation of structured cross-modality affinity in mobile contexts using a hierarchical analysis-based normalized matrix. This approach accommodates the diversity and dynamics of modalities, generalizing across different types and numbers of inputs. Employing an affinity attention-based conditional GAN (ACGAN), AdaFlow facilitates flexible data imputation, adapting to various modalities and downstream tasks without retraining. Experiments show that AdaFlow significantly reduces inference latency by up to 79.9\% and enhances accuracy by up to 61.9\%, outperforming status quo approaches.

The predominant de facto paradigm of testing ML models relies on either using only held-out data to compute aggregate evaluation metrics or by assessing the performance on different subgroups. However, such data-only testing methods operate under the restrictive assumption that the available empirical data is the sole input for testing ML models, disregarding valuable contextual information that could guide model testing. In this paper, we challenge the go-to approach of data-only testing and introduce context-aware testing (CAT) which uses context as an inductive bias to guide the search for meaningful model failures. We instantiate the first CAT system, SMART Testing, which employs large language models to hypothesize relevant and likely failures, which are evaluated on data using a self-falsification mechanism. Through empirical evaluations in diverse settings, we show that SMART automatically identifies more relevant and impactful failures than alternatives, demonstrating the potential of CAT as a testing paradigm.

Drones have revolutionized the fields of aerial imaging, mapping, and disaster recovery. However, the deployment of drones in low-light conditions is constrained by the image quality produced by their on-board cameras. In this paper, we present a learning architecture for improving 3D reconstructions in low-light conditions by finding features in a burst. Our approach enhances visual reconstruction by detecting and describing high quality true features and less spurious features in low signal-to-noise ratio images. We demonstrate that our method is capable of handling challenging scenes in millilux illumination, making it a significant step towards drones operating at night and in extremely low-light applications such as underground mining and search and rescue operations.

Visual dialogue is a challenging task that needs to extract implicit information from both visual (image) and textual (dialogue history) contexts. Classical approaches pay more attention to the integration of the current question, vision knowledge and text knowledge, despising the heterogeneous semantic gaps between the cross-modal information. In the meantime, the concatenation operation has become de-facto standard to the cross-modal information fusion, which has a limited ability in information retrieval. In this paper, we propose a novel Knowledge-Bridge Graph Network (KBGN) model by using graph to bridge the cross-modal semantic relations between vision and text knowledge in fine granularity, as well as retrieving required knowledge via an adaptive information selection mode. Moreover, the reasoning clues for visual dialogue can be clearly drawn from intra-modal entities and inter-modal bridges. Experimental results on VisDial v1.0 and VisDial-Q datasets demonstrate that our model outperforms exiting models with state-of-the-art results.

We propose a novel attention gate (AG) model for medical imaging that automatically learns to focus on target structures of varying shapes and sizes. Models trained with AGs implicitly learn to suppress irrelevant regions in an input image while highlighting salient features useful for a specific task. This enables us to eliminate the necessity of using explicit external tissue/organ localisation modules of cascaded convolutional neural networks (CNNs). AGs can be easily integrated into standard CNN architectures such as the U-Net model with minimal computational overhead while increasing the model sensitivity and prediction accuracy. The proposed Attention U-Net architecture is evaluated on two large CT abdominal datasets for multi-class image segmentation. Experimental results show that AGs consistently improve the prediction performance of U-Net across different datasets and training sizes while preserving computational efficiency. The code for the proposed architecture is publicly available.