Nanopore sequencers, being superior to other sequencing technologies for DNA storage in multiple aspects, have attracted considerable attention in recent times. Their high error rates however demand thorough research on practical and efficient coding schemes to enable accurate recovery of stored data. To this end, we consider a simplified model of a nanopore sequencer inspired by Mao \emph{et al.}, that incorporates intersymbol interference and measurement noise. Essentially, our channel model passes a sliding window of length $\ell$ over an input sequence, that outputs the $L_1$-weight of the enclosed $\ell$ bits and shifts by $\delta$ positions with each time step. The resulting $(\ell+1)$-ary vector, termed the \emph{read vector}, may also be corrupted by $t$ substitution errors. By employing graph-theoretic techniques, we deduce that for $\delta=1$, at least $\log \log n$ bits of redundancy are required to correct a single ($t=1$) substitution. Finally for $\ell \geq 3$, we exploit some inherent characteristics of read vectors to arrive at an error-correcting code that is optimal up to an additive constant for this setting.
Regression analysis based on many covariates is becoming increasingly common. However, when the number of covariates $p$ is of the same order as the number of observations $n$, statistical protocols like maximum likelihood estimation of regression and nuisance parameters become unreliable due to overfitting. Overfitting typically leads to systematic estimation biases, and to increased estimator variances. It is crucial to be able to correctly quantify these effects, for inference and prediction purposes. In literature, several methods have been proposed to overcome overfitting bias or adjust estimates. The vast majority of these focus on the regression parameters only, either via empirical regularization methods or by expansion for small ratios $p/n$. This failure to correctly estimate also the nuisance parameters may lead to significant errors in outcome predictions. In this paper we use the leave one out method to derive the compact set of non-linear equations for the overfitting biases of maximum likelihood (ML) estimators in parametric regression models, as obtained previously using the replica method. We show that these equations enable one to correct regression and nuisance parameter estimators, and make them asymptotically unbiased. To illustrate the theory we performed simulation studies for multiple regression models. In all cases we find excellent agreement between theory and simulations.
Deep learning is increasingly impacting various aspects of contemporary society. Artificial neural networks have emerged as the dominant models for solving an expanding range of tasks. The introduction of Neural Architecture Search (NAS) techniques, which enable the automatic design of task-optimal networks, has led to remarkable advances. However, the NAS process is typically associated with long execution times and significant computational resource requirements. Once-For-All (OFA) and its successor, Once-For-All-2 (OFAv2), have been developed to mitigate these challenges. While maintaining exceptional performance and eliminating the need for retraining, they aim to build a single super-network model capable of directly extracting sub-networks satisfying different constraints. Neural Architecture Transfer (NAT) was developed to maximise the effectiveness of extracting sub-networks from a super-network. In this paper, we present NATv2, an extension of NAT that improves multi-objective search algorithms applied to dynamic super-network architectures. NATv2 achieves qualitative improvements in the extractable sub-networks by exploiting the improved super-networks generated by OFAv2 and incorporating new policies for initialisation, pre-processing and updating its networks archive. In addition, a post-processing pipeline based on fine-tuning is introduced. Experimental results show that NATv2 successfully improves NAT and is highly recommended for investigating high-performance architectures with a minimal number of parameters.
This paper is a collection of results on combinatorial properties of codes for the Z-channel. A Z-channel with error fraction $\tau$ takes as input a length-$n$ binary codeword and injects in an adversarial manner up to $n\tau$ asymmetric errors, i.e., errors that only zero out bits but do not flip $0$'s to $1$'s. It is known that the largest $(L-1)$-list-decodable code for the Z-channel with error fraction $\tau$ has exponential size (in $n$) if $\tau$ is less than a critical value that we call the $(L-1)$-list-decoding Plotkin point and has constant size if $\tau$ is larger than the threshold. The $(L-1)$-list-decoding Plotkin point is known to be $ L^{-\frac{1}{L-1}} - L^{-\frac{L}{L-1}} $, which equals $1/4$ for unique-decoding with $ L-1=1 $. In this paper, we derive various results for the size of the largest codes above and below the list-decoding Plotkin point. In particular, we show that the largest $(L-1)$-list-decodable code $\epsilon$-above the Plotkin point, {for any given sufficiently small positive constant $ \epsilon>0 $,} has size $\Theta_L(\epsilon^{-3/2})$ for any $L-1\ge1$. We also devise upper and lower bounds on the exponential size of codes below the list-decoding Plotkin point.
Dictionary learning is an effective tool for pattern recognition and classification of time series data. Among various dictionary learning techniques, the dynamic time warping (DTW) is commonly used for dealing with temporal delays, scaling, transformation, and many other kinds of temporal misalignments issues. However, the DTW suffers overfitting or information loss due to its discrete nature in aligning time series data. To address this issue, we propose a generalized time warping invariant dictionary learning algorithm in this paper. Our approach features a generalized time warping operator, which consists of linear combinations of continuous basis functions for facilitating continuous temporal warping. The integration of the proposed operator and the dictionary learning is formulated as an optimization problem, where the block coordinate descent method is employed to jointly optimize warping paths, dictionaries, and sparseness coefficients. The optimized results are then used as hyperspace distance measures to feed classification and clustering algorithms. The superiority of the proposed method in terms of dictionary learning, classification, and clustering is validated through ten sets of public datasets in comparing with various benchmark methods.
A Random Vector Functional Link (RVFL) network is a depth-2 neural network with random inner weights and biases. As only the outer weights of such architectures need to be learned, the learning process boils down to a linear optimization task, allowing one to sidestep the pitfalls of nonconvex optimization problems. In this paper, we prove that an RVFL with ReLU activation functions can approximate Lipschitz continuous functions provided its hidden layer is exponentially wide in the input dimension. Although it has been established before that such approximation can be achieved in $L_2$ sense, we prove it for $L_\infty$ approximation error and Gaussian inner weights. To the best of our knowledge, our result is the first of this kind. We give a nonasymptotic lower bound for the number of hidden layer nodes, depending on, among other things, the Lipschitz constant of the target function, the desired accuracy, and the input dimension. Our method of proof is rooted in probability theory and harmonic analysis.
Deep neural networks (DNNs) offer the highest performance in a wide range of applications in computer vision. These results rely on over-parameterized backbones, which are expensive to run. This computational burden can be dramatically reduced by quantizing (in either data-free (DFQ), post-training (PTQ) or quantization-aware training (QAT) scenarios) floating point values to ternary values (2 bits, with each weight taking value in {-1,0,1}). In this context, we observe that rounding to nearest minimizes the expected error given a uniform distribution and thus does not account for the skewness and kurtosis of the weight distribution, which strongly affects ternary quantization performance. This raises the following question: shall one minimize the highest or average quantization error? To answer this, we design two operators: TQuant and MQuant that correspond to these respective minimization tasks. We show experimentally that our approach allows to significantly improve the performance of ternary quantization through a variety of scenarios in DFQ, PTQ and QAT and give strong insights to pave the way for future research in deep neural network quantization.
Imitation Learning (IL) is a sample efficient paradigm for robot learning using expert demonstrations. However, policies learned through IL suffer from state distribution shift at test time, due to compounding errors in action prediction which lead to previously unseen states. Choosing an action representation for the policy that minimizes this distribution shift is critical in imitation learning. Prior work propose using temporal action abstractions to reduce compounding errors, but they often sacrifice policy dexterity or require domain-specific knowledge. To address these trade-offs, we introduce HYDRA, a method that leverages a hybrid action space with two levels of action abstractions: sparse high-level waypoints and dense low-level actions. HYDRA dynamically switches between action abstractions at test time to enable both coarse and fine-grained control of a robot. In addition, HYDRA employs action relabeling to increase the consistency of actions in the dataset, further reducing distribution shift. HYDRA outperforms prior imitation learning methods by 30-40% on seven challenging simulation and real world environments, involving long-horizon tasks in the real world like making coffee and toasting bread. Videos are found on our website: //tinyurl.com/3mc6793z
The Q-learning algorithm is known to be affected by the maximization bias, i.e. the systematic overestimation of action values, an important issue that has recently received renewed attention. Double Q-learning has been proposed as an efficient algorithm to mitigate this bias. However, this comes at the price of an underestimation of action values, in addition to increased memory requirements and a slower convergence. In this paper, we introduce a new way to address the maximization bias in the form of a "self-correcting algorithm" for approximating the maximum of an expected value. Our method balances the overestimation of the single estimator used in conventional Q-learning and the underestimation of the double estimator used in Double Q-learning. Applying this strategy to Q-learning results in Self-correcting Q-learning. We show theoretically that this new algorithm enjoys the same convergence guarantees as Q-learning while being more accurate. Empirically, it performs better than Double Q-learning in domains with rewards of high variance, and it even attains faster convergence than Q-learning in domains with rewards of zero or low variance. These advantages transfer to a Deep Q Network implementation that we call Self-correcting DQN and which outperforms regular DQN and Double DQN on several tasks in the Atari 2600 domain.
The previous work for event extraction has mainly focused on the predictions for event triggers and argument roles, treating entity mentions as being provided by human annotators. This is unrealistic as entity mentions are usually predicted by some existing toolkits whose errors might be propagated to the event trigger and argument role recognition. Few of the recent work has addressed this problem by jointly predicting entity mentions, event triggers and arguments. However, such work is limited to using discrete engineering features to represent contextual information for the individual tasks and their interactions. In this work, we propose a novel model to jointly perform predictions for entity mentions, event triggers and arguments based on the shared hidden representations from deep learning. The experiments demonstrate the benefits of the proposed method, leading to the state-of-the-art performance for event extraction.
Many natural language processing tasks solely rely on sparse dependencies between a few tokens in a sentence. Soft attention mechanisms show promising performance in modeling local/global dependencies by soft probabilities between every two tokens, but they are not effective and efficient when applied to long sentences. By contrast, hard attention mechanisms directly select a subset of tokens but are difficult and inefficient to train due to their combinatorial nature. In this paper, we integrate both soft and hard attention into one context fusion model, "reinforced self-attention (ReSA)", for the mutual benefit of each other. In ReSA, a hard attention trims a sequence for a soft self-attention to process, while the soft attention feeds reward signals back to facilitate the training of the hard one. For this purpose, we develop a novel hard attention called "reinforced sequence sampling (RSS)", selecting tokens in parallel and trained via policy gradient. Using two RSS modules, ReSA efficiently extracts the sparse dependencies between each pair of selected tokens. We finally propose an RNN/CNN-free sentence-encoding model, "reinforced self-attention network (ReSAN)", solely based on ReSA. It achieves state-of-the-art performance on both Stanford Natural Language Inference (SNLI) and Sentences Involving Compositional Knowledge (SICK) datasets.