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Metadata play a crucial role in ensuring the findability, accessibility, interoperability, and reusability of datasets. This paper investigates the potential of large language models (LLMs), specifically GPT-4, to improve adherence to metadata standards. We conducted experiments on 200 random data records describing human samples relating to lung cancer from the NCBI BioSample repository, evaluating GPT-4's ability to suggest edits for adherence to metadata standards. We computed the adherence accuracy of field name-field value pairs through a peer review process, and we observed a marginal average improvement in adherence to the standard data dictionary from 79% to 80% (p<0.5). We then prompted GPT-4 with domain information in the form of the textual descriptions of CEDAR templates and recorded a significant improvement to 97% from 79% (p<0.01). These results indicate that, while LLMs may not be able to correct legacy metadata to ensure satisfactory adherence to standards when unaided, they do show promise for use in automated metadata curation when integrated with a structured knowledge base

We consider the challenging problem of estimating causal effects from purely observational data in the bi-directional Mendelian randomization (MR), where some invalid instruments, as well as unmeasured confounding, usually exist. To address this problem, most existing methods attempt to find proper valid instrumental variables (IVs) for the target causal effect by expert knowledge or by assuming that the causal model is a one-directional MR model. As such, in this paper, we first theoretically investigate the identification of the bi-directional MR from observational data. In particular, we provide necessary and sufficient conditions under which valid IV sets are correctly identified such that the bi-directional MR model is identifiable, including the causal directions of a pair of phenotypes (i.e., the treatment and outcome). Moreover, based on the identification theory, we develop a cluster fusion-like method to discover valid IV sets and estimate the causal effects of interest. We theoretically demonstrate the correctness of the proposed algorithm. Experimental results show the effectiveness of our method for estimating causal effects in bi-directional MR.

Reinforcement learning algorithms typically rely on the assumption that the environment dynamics and value function can be expressed in terms of a Markovian state representation. However, when state information is only partially observable, how can an agent learn such a state representation, and how can it detect when it has found one? We introduce a metric that can accomplish both objectives, without requiring access to--or knowledge of--an underlying, unobservable state space. Our metric, the $\lambda$-discrepancy, is the difference between two distinct temporal difference (TD) value estimates, each computed using TD($\lambda$) with a different value of $\lambda$. Since TD($\lambda$=0) makes an implicit Markov assumption and TD($\lambda$=1) does not, a discrepancy between these estimates is a potential indicator of a non-Markovian state representation. Indeed, we prove that the $\lambda$-discrepancy is exactly zero for all Markov decision processes and almost always non-zero for a broad class of partially observable environments. We also demonstrate empirically that, once detected, minimizing the $\lambda$-discrepancy can help with learning a memory function to mitigate the corresponding partial observability. We then train a reinforcement learning agent that simultaneously constructs two recurrent value networks with different $\lambda$ parameters and minimizes the difference between them as an auxiliary loss. The approach scales to challenging partially observable domains, where the resulting agent frequently performs significantly better (and never performs worse) than a baseline recurrent agent with only a single value network.

Political scientists are increasingly attuned to the promises and pitfalls of establishing causal effects. But the vital question for many is not if a causal effect exists but why and how it exists. Even so, many researchers avoid causal mediation analyses due to the assumptions required, instead opting to explore causal mechanisms through what we call intermediate outcome tests. These tests use the same research design used to estimate the effect of treatment on the outcome to estimate the effect of the treatment on one or more mediators, with authors often concluding that evidence of the latter is evidence of a causal mechanism. We show in this paper that, without further assumptions, this can neither establish nor rule out the existence of a causal mechanism. Instead, such conclusions about the indirect effect of treatment rely on implicit and usually very strong assumptions that are often unmet. Thus, such causal mechanism tests, though very common in political science, should not be viewed as a free lunch but rather should be used judiciously, and researchers should explicitly state and defend the requisite assumptions.

In-situ sensing, in conjunction with learning models, presents a unique opportunity to address persistent defect issues in Additive Manufacturing (AM) processes. However, this integration introduces significant data privacy concerns, such as data leakage, sensor data compromise, and model inversion attacks, revealing critical details about part design, material composition, and machine parameters. Differential Privacy (DP) models, which inject noise into data under mathematical guarantees, offer a nuanced balance between data utility and privacy by obscuring traces of sensing data. However, the introduction of noise into learning models, often functioning as black boxes, complicates the prediction of how specific noise levels impact model accuracy. This study introduces the Differential Privacy-HyperDimensional computing (DP-HD) framework, leveraging the explainability of the vector symbolic paradigm to predict the noise impact on the accuracy of in-situ monitoring, safeguarding sensitive data while maintaining operational efficiency. Experimental results on real-world high-speed melt pool data of AM for detecting overhang anomalies demonstrate that DP-HD achieves superior operational efficiency, prediction accuracy, and robust privacy protection, outperforming state-of-the-art Machine Learning (ML) models. For example, when implementing the same level of privacy protection (with a privacy budget set at 1), our model achieved an accuracy of 94.43\%, surpassing the performance of traditional models such as ResNet50 (52.30\%), GoogLeNet (23.85\%), AlexNet (55.78\%), DenseNet201 (69.13\%), and EfficientNet B2 (40.81\%). Notably, DP-HD maintains high performance under substantial noise additions designed to enhance privacy, unlike current models that suffer significant accuracy declines under high privacy constraints.

Stochastic optimisation algorithms are the de facto standard for machine learning with large amounts of data. Handling only a subset of available data in each optimisation step dramatically reduces the per-iteration computational costs, while still ensuring significant progress towards the solution. Driven by the need to solve large-scale optimisation problems as efficiently as possible, the last decade has witnessed an explosion of research in this area. Leveraging the parallels between machine learning and inverse problems has allowed harnessing the power of this research wave for solving inverse problems. In this survey, we provide a comprehensive account of the state-of-the-art in stochastic optimisation from the viewpoint of inverse problems. We present algorithms with diverse modalities of problem randomisation and discuss the roles of variance reduction, acceleration, higher-order methods, and other algorithmic modifications, and compare theoretical results with practical behaviour. We focus on the potential and the challenges for stochastic optimisation that are unique to inverse imaging problems and are not commonly encountered in machine learning. We conclude the survey with illustrative examples from imaging problems to examine the advantages and disadvantages that this new generation of algorithms bring to the field of inverse problems.

Large Language Models (LLMs) have demonstrated remarkable capabilities across various applications, fundamentally reshaping the landscape of natural language processing (NLP) research. However, recent evaluation frameworks often rely on the output probabilities of LLMs for predictions, primarily due to computational constraints, diverging from real-world LLM usage scenarios. While widely employed, the efficacy of these probability-based evaluation strategies remains an open research question. This study aims to scrutinize the validity of such probability-based evaluation methods within the context of using LLMs for Multiple Choice Questions (MCQs), highlighting their inherent limitations. Our empirical investigation reveals that the prevalent probability-based evaluation method inadequately aligns with generation-based prediction. Furthermore, current evaluation frameworks typically assess LLMs through predictive tasks based on output probabilities rather than directly generating responses, owing to computational limitations. We illustrate that these probability-based approaches do not effectively correspond with generative predictions. The outcomes of our study can enhance the understanding of LLM evaluation methodologies and provide insights for future research in this domain.

Domain generalization (DG), i.e., out-of-distribution generalization, has attracted increased interests in recent years. Domain generalization deals with a challenging setting where one or several different but related domain(s) are given, and the goal is to learn a model that can generalize to an unseen test domain. For years, great progress has been achieved. This paper presents the first review for recent advances in domain generalization. First, we provide a formal definition of domain generalization and discuss several related fields. Next, we thoroughly review the theories related to domain generalization and carefully analyze the theory behind generalization. Then, we categorize recent algorithms into three classes and present them in detail: data manipulation, representation learning, and learning strategy, each of which contains several popular algorithms. Third, we introduce the commonly used datasets and applications. Finally, we summarize existing literature and present some potential research topics for the future.

Most recent semantic segmentation methods adopt a fully-convolutional network (FCN) with an encoder-decoder architecture. The encoder progressively reduces the spatial resolution and learns more abstract/semantic visual concepts with larger receptive fields. Since context modeling is critical for segmentation, the latest efforts have been focused on increasing the receptive field, through either dilated/atrous convolutions or inserting attention modules. However, the encoder-decoder based FCN architecture remains unchanged. In this paper, we aim to provide an alternative perspective by treating semantic segmentation as a sequence-to-sequence prediction task. Specifically, we deploy a pure transformer (ie, without convolution and resolution reduction) to encode an image as a sequence of patches. With the global context modeled in every layer of the transformer, this encoder can be combined with a simple decoder to provide a powerful segmentation model, termed SEgmentation TRansformer (SETR). Extensive experiments show that SETR achieves new state of the art on ADE20K (50.28% mIoU), Pascal Context (55.83% mIoU) and competitive results on Cityscapes. Particularly, we achieve the first (44.42% mIoU) position in the highly competitive ADE20K test server leaderboard.

Incorporating knowledge graph into recommender systems has attracted increasing attention in recent years. By exploring the interlinks within a knowledge graph, the connectivity between users and items can be discovered as paths, which provide rich and complementary information to user-item interactions. Such connectivity not only reveals the semantics of entities and relations, but also helps to comprehend a user's interest. However, existing efforts have not fully explored this connectivity to infer user preferences, especially in terms of modeling the sequential dependencies within and holistic semantics of a path. In this paper, we contribute a new model named Knowledge-aware Path Recurrent Network (KPRN) to exploit knowledge graph for recommendation. KPRN can generate path representations by composing the semantics of both entities and relations. By leveraging the sequential dependencies within a path, we allow effective reasoning on paths to infer the underlying rationale of a user-item interaction. Furthermore, we design a new weighted pooling operation to discriminate the strengths of different paths in connecting a user with an item, endowing our model with a certain level of explainability. We conduct extensive experiments on two datasets about movie and music, demonstrating significant improvements over state-of-the-art solutions Collaborative Knowledge Base Embedding and Neural Factorization Machine.