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With the boom in modern software development, open-source software has become an integral part of various industries, driving progress in computer science. However, the immense complexity and diversity of the open-source ecosystem also pose a series of challenges, including issues of quality, security, management, maintenance, compliance, and sustainability. Existing open-source governance approaches, while excelling in community building and collaboration, still face shortcomings in decentralized management, security, and maintenance. To address these challenges, inspired by the Human Genome Project, we treat the software source code as software DNA and propose the \textbf{Software Genome Project}, which is geared towards the secure monitoring and exploitation of open-source software. By identifying and labeling integrated and classified code features at a fine-grained level, and effectively identifying safeguards for functional implementations and non-functional requirements at different levels of granularity, Software Genome Project builds a complete set of software genome maps to help developers and managers gain a deeper understanding of software complexity and diversity. By dissecting and summarizing functional and undesirable genes, Software Genome Project helps facilitate targeted software remediation and optimization, provides valuable insight and understanding of the entire software ecosystem, and supports critical development tasks such as technology selection and open source governance. This project is expected to drive the evolution of software development towards more efficient, reliable, and sustainable software solutions.

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Machine learning for malware classification shows encouraging results, but real deployments suffer from performance degradation as malware authors adapt their techniques to evade detection. This phenomenon, known as concept drift, occurs as new malware examples evolve and become less and less like the original training examples. One promising method to cope with concept drift is classification with rejection in which examples that are likely to be misclassified are instead quarantined until they can be expertly analyzed. We propose TRANSCENDENT, a rejection framework built on Transcend, a recently proposed strategy based on conformal prediction theory. In particular, we provide a formal treatment of Transcend, enabling us to refine conformal evaluation theory -- its underlying statistical engine -- and gain a better understanding of the theoretical reasons for its effectiveness. In the process, we develop two additional conformal evaluators that match or surpass the performance of the original while significantly decreasing the computational overhead. We evaluate TRANSCENDENT on a malware dataset spanning 5 years that removes sources of experimental bias present in the original evaluation. TRANSCENDENT outperforms state-of-the-art approaches while generalizing across different malware domains and classifiers. To further assist practitioners, we determine the optimal operational settings for a TRANSCENDENT deployment and show how it can be applied to many popular learning algorithms. These insights support both old and new empirical findings, making Transcend a sound and practical solution for the first time. To this end, we release TRANSCENDENT as open source, to aid the adoption of rejection strategies by the security community.

In software development, the predominant emphasis on functionality often supersedes security concerns, a trend gaining momentum with AI-driven automation tools like GitHub Copilot. These tools significantly improve developers' efficiency in functional code development. Nevertheless, it remains a notable concern that such tools are also responsible for creating insecure code, predominantly because of pre-training on publicly available repositories with vulnerable code. Moreover, developers are called the "weakest link in the chain" since they have very minimal knowledge of code security. Although existing solutions provide a reasonable solution to vulnerable code, they must adequately describe and educate the developers on code security to ensure that the security issues are not repeated. Therefore we introduce a multipurpose code vulnerability analysis system \texttt{SecRepair}, powered by a large language model, CodeGen2 assisting the developer in identifying and generating fixed code along with a complete description of the vulnerability with a code comment. Our innovative methodology uses a reinforcement learning paradigm to generate code comments augmented by a semantic reward mechanism. Inspired by how humans fix code issues, we propose an instruction-based dataset suitable for vulnerability analysis with LLMs. We further identify zero-day and N-day vulnerabilities in 6 Open Source IoT Operating Systems on GitHub. Our findings underscore that incorporating reinforcement learning coupled with semantic reward augments our model's performance, thereby fortifying its capacity to address code vulnerabilities with improved efficacy.

Context: Deep learning has achieved remarkable progress in various domains. However, like traditional software systems, deep learning systems contain bugs, which can have severe impacts, as evidenced by crashes involving autonomous vehicles. Despite substantial advancements in deep learning techniques, little research has focused on reproducing deep learning bugs, which hinders resolving them. Existing literature suggests that only 3% of deep learning bugs are reproducible, underscoring the need for further research. Objective: This paper examines the reproducibility of deep learning bugs. We identify edit actions and useful information that could improve deep learning bug reproducibility. Method: First, we construct a dataset of 668 deep learning bugs from Stack Overflow and Defects4ML across 3 frameworks and 22 architectures. Second, we select 102 bugs using stratified sampling and try to determine their reproducibility. While reproducing these bugs, we identify edit actions and useful information necessary for their reproduction. Third, we used the Apriori algorithm to identify useful information and edit actions required to reproduce specific bug types. Finally, we conduct a user study with 22 developers to assess the effectiveness of our findings in real-life settings. Results: We successfully reproduced 85 bugs and identified ten edit actions and five useful information categories that can help us reproduce deep learning bugs. Our findings improved bug reproducibility by 22.92% and reduced reproduction time by 24.35% based on our user study. Conclusions: Our research addresses the critical issue of deep learning bug reproducibility. Practitioners and researchers can leverage our findings to improve deep learning bug reproducibility.

With the widespread use of biometric recognition, several issues related to the privacy and security provided by this technology have been recently raised and analysed. As a result, the early common belief among the biometrics community of templates irreversibility has been proven wrong. It is now an accepted fact that it is possible to reconstruct from an unprotected template a synthetic sample that matches the bona fide one. This reverse engineering process, commonly referred to as \textit{inverse biometrics}, constitutes a severe threat for biometric systems from two different angles: on the one hand, sensitive personal data (i.e., biometric data) can be derived from compromised unprotected templates; on the other hand, other powerful attacks can be launched building upon these reconstructed samples. Given its important implications, biometric stakeholders have produced over the last fifteen years numerous works analysing the different aspects related to inverse biometrics: development of reconstruction algorithms for different characteristics; proposal of methodologies to assess the vulnerabilities of biometric systems to the aforementioned algorithms; development of countermeasures to reduce the possible effects of attacks. The present article is an effort to condense all this information in one comprehensive review of: the problem itself, the evaluation of the problem, and the mitigation of the problem. The present article is an effort to condense all this information in one comprehensive review of: the problem itself, the evaluation of the problem, and the mitigation of the problem.

Over the past few years, the rapid development of deep learning technologies for computer vision has greatly promoted the performance of medical image segmentation (MedISeg). However, the recent MedISeg publications usually focus on presentations of the major contributions (e.g., network architectures, training strategies, and loss functions) while unwittingly ignoring some marginal implementation details (also known as "tricks"), leading to a potential problem of the unfair experimental result comparisons. In this paper, we collect a series of MedISeg tricks for different model implementation phases (i.e., pre-training model, data pre-processing, data augmentation, model implementation, model inference, and result post-processing), and experimentally explore the effectiveness of these tricks on the consistent baseline models. Compared to paper-driven surveys that only blandly focus on the advantages and limitation analyses of segmentation models, our work provides a large number of solid experiments and is more technically operable. With the extensive experimental results on both the representative 2D and 3D medical image datasets, we explicitly clarify the effect of these tricks. Moreover, based on the surveyed tricks, we also open-sourced a strong MedISeg repository, where each of its components has the advantage of plug-and-play. We believe that this milestone work not only completes a comprehensive and complementary survey of the state-of-the-art MedISeg approaches, but also offers a practical guide for addressing the future medical image processing challenges including but not limited to small dataset learning, class imbalance learning, multi-modality learning, and domain adaptation. The code has been released at: //github.com/hust-linyi/MedISeg

Existing recommender systems extract the user preference based on learning the correlation in data, such as behavioral correlation in collaborative filtering, feature-feature, or feature-behavior correlation in click-through rate prediction. However, regretfully, the real world is driven by causality rather than correlation, and correlation does not imply causation. For example, the recommender systems can recommend a battery charger to a user after buying a phone, in which the latter can serve as the cause of the former, and such a causal relation cannot be reversed. Recently, to address it, researchers in recommender systems have begun to utilize causal inference to extract causality, enhancing the recommender system. In this survey, we comprehensively review the literature on causal inference-based recommendation. At first, we present the fundamental concepts of both recommendation and causal inference as the basis of later content. We raise the typical issues that the non-causality recommendation is faced. Afterward, we comprehensively review the existing work of causal inference-based recommendation, based on a taxonomy of what kind of problem causal inference addresses. Last, we discuss the open problems in this important research area, along with interesting future works.

The rapid development of deep learning has made a great progress in segmentation, one of the fundamental tasks of computer vision. However, the current segmentation algorithms mostly rely on the availability of pixel-level annotations, which are often expensive, tedious, and laborious. To alleviate this burden, the past years have witnessed an increasing attention in building label-efficient, deep-learning-based segmentation algorithms. This paper offers a comprehensive review on label-efficient segmentation methods. To this end, we first develop a taxonomy to organize these methods according to the supervision provided by different types of weak labels (including no supervision, coarse supervision, incomplete supervision and noisy supervision) and supplemented by the types of segmentation problems (including semantic segmentation, instance segmentation and panoptic segmentation). Next, we summarize the existing label-efficient segmentation methods from a unified perspective that discusses an important question: how to bridge the gap between weak supervision and dense prediction -- the current methods are mostly based on heuristic priors, such as cross-pixel similarity, cross-label constraint, cross-view consistency, cross-image relation, etc. Finally, we share our opinions about the future research directions for label-efficient deep segmentation.

Influenced by the stunning success of deep learning in computer vision and language understanding, research in recommendation has shifted to inventing new recommender models based on neural networks. In recent years, we have witnessed significant progress in developing neural recommender models, which generalize and surpass traditional recommender models owing to the strong representation power of neural networks. In this survey paper, we conduct a systematic review on neural recommender models, aiming to summarize the field to facilitate future progress. Distinct from existing surveys that categorize existing methods based on the taxonomy of deep learning techniques, we instead summarize the field from the perspective of recommendation modeling, which could be more instructive to researchers and practitioners working on recommender systems. Specifically, we divide the work into three types based on the data they used for recommendation modeling: 1) collaborative filtering models, which leverage the key source of user-item interaction data; 2) content enriched models, which additionally utilize the side information associated with users and items, like user profile and item knowledge graph; and 3) context enriched models, which account for the contextual information associated with an interaction, such as time, location, and the past interactions. After reviewing representative works for each type, we finally discuss some promising directions in this field, including benchmarking recommender systems, graph reasoning based recommendation models, and explainable and fair recommendations for social good.

Stickers with vivid and engaging expressions are becoming increasingly popular in online messaging apps, and some works are dedicated to automatically select sticker response by matching text labels of stickers with previous utterances. However, due to their large quantities, it is impractical to require text labels for the all stickers. Hence, in this paper, we propose to recommend an appropriate sticker to user based on multi-turn dialog context history without any external labels. Two main challenges are confronted in this task. One is to learn semantic meaning of stickers without corresponding text labels. Another challenge is to jointly model the candidate sticker with the multi-turn dialog context. To tackle these challenges, we propose a sticker response selector (SRS) model. Specifically, SRS first employs a convolutional based sticker image encoder and a self-attention based multi-turn dialog encoder to obtain the representation of stickers and utterances. Next, deep interaction network is proposed to conduct deep matching between the sticker with each utterance in the dialog history. SRS then learns the short-term and long-term dependency between all interaction results by a fusion network to output the the final matching score. To evaluate our proposed method, we collect a large-scale real-world dialog dataset with stickers from one of the most popular online chatting platform. Extensive experiments conducted on this dataset show that our model achieves the state-of-the-art performance for all commonly-used metrics. Experiments also verify the effectiveness of each component of SRS. To facilitate further research in sticker selection field, we release this dataset of 340K multi-turn dialog and sticker pairs.

Small data challenges have emerged in many learning problems, since the success of deep neural networks often relies on the availability of a huge amount of labeled data that is expensive to collect. To address it, many efforts have been made on training complex models with small data in an unsupervised and semi-supervised fashion. In this paper, we will review the recent progresses on these two major categories of methods. A wide spectrum of small data models will be categorized in a big picture, where we will show how they interplay with each other to motivate explorations of new ideas. We will review the criteria of learning the transformation equivariant, disentangled, self-supervised and semi-supervised representations, which underpin the foundations of recent developments. Many instantiations of unsupervised and semi-supervised generative models have been developed on the basis of these criteria, greatly expanding the territory of existing autoencoders, generative adversarial nets (GANs) and other deep networks by exploring the distribution of unlabeled data for more powerful representations. While we focus on the unsupervised and semi-supervised methods, we will also provide a broader review of other emerging topics, from unsupervised and semi-supervised domain adaptation to the fundamental roles of transformation equivariance and invariance in training a wide spectrum of deep networks. It is impossible for us to write an exclusive encyclopedia to include all related works. Instead, we aim at exploring the main ideas, principles and methods in this area to reveal where we are heading on the journey towards addressing the small data challenges in this big data era.

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