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In this paper, we introduce a general numerical method to approximate the reproduction numbers of a large class of multi-group, age-structured, population models with a finite age span. To provide complete flexibility in the definition of the birth and transition processes, we propose an equivalent formulation for the age-integrated state within the extended space framework. Then, we discretize the birth and transition operators via pseudospectral collocation. We discuss applications to epidemic models with continuous and piecewise continuous rates, with different interpretations of the age variable (e.g., demographic age, infection age and disease age) and the transmission terms (e.g., horizontal and vertical transmission). The tests illustrate that the method can compute different reproduction numbers, including the basic and type reproduction numbers as special cases.

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In this paper, we develop a general theory for adaptive nonparametric estimation of the mean function of a non-stationary and nonlinear time series model using deep neural networks (DNNs). We first consider two types of DNN estimators, non-penalized and sparse-penalized DNN estimators, and establish their generalization error bounds for general non-stationary time series. We then derive minimax lower bounds for estimating mean functions belonging to a wide class of nonlinear autoregressive (AR) models that include nonlinear generalized additive AR, single index, and threshold AR models. Building upon the results, we show that the sparse-penalized DNN estimator is adaptive and attains the minimax optimal rates up to a poly-logarithmic factor for many nonlinear AR models. Through numerical simulations, we demonstrate the usefulness of the DNN methods for estimating nonlinear AR models with intrinsic low-dimensional structures and discontinuous or rough mean functions, which is consistent with our theory.

Superconvergence of differential structure on discretized surfaces is studied in this paper. The newly introduced geometric supercloseness provides us with a fundamental tool to prove the superconvergence of gradient recovery on deviated surfaces. An algorithmic framework for gradient recovery without exact geometric information is introduced. Several numerical examples are documented to validate the theoretical results.

In this paper, we present a quantum algorithm for approximating multivariate traces, i.e. the traces of matrix products. Our research is motivated by the extensive utility of multivariate traces in elucidating spectral characteristics of matrices, as well as by recent advancements in leveraging quantum computing for faster numerical linear algebra. Central to our approach is a direct translation of a multivariate trace formula into a quantum circuit, achieved through a sequence of low-level circuit construction operations. To facilitate this translation, we introduce \emph{quantum Matrix States Linear Algebra} (qMSLA), a framework tailored for the efficient generation of state preparation circuits via primitive matrix algebra operations. Our algorithm relies on sets of state preparation circuits for input matrices as its primary inputs and yields two state preparation circuits encoding the multivariate trace as output. These circuits are constructed utilizing qMSLA operations, which enact the aforementioned multivariate trace formula. We emphasize that our algorithm's inputs consist solely of state preparation circuits, eschewing harder to synthesize constructs such as Block Encodings. Furthermore, our approach operates independently of the availability of specialized hardware like QRAM, underscoring its versatility and practicality.

Simulating soil reflectance spectra is invaluable for soil-plant radiative modeling and training machine learning models, yet it is difficult as the intricate relationships between soil structure and its constituents. To address this, a fully data-driven soil optics generative model (SOGM) for simulation of soil reflectance spectra based on soil property inputs was developed. The model is trained on an extensive dataset comprising nearly 180,000 soil spectra-property pairs from 17 datasets. It generates soil reflectance spectra from text-based inputs describing soil properties and their values rather than only numerical values and labels in binary vector format. The generative model can simulate output spectra based on an incomplete set of input properties. SOGM is based on the denoising diffusion probabilistic model (DDPM). Two additional sub-models were also built to complement the SOGM: a spectral padding model that can fill in the gaps for spectra shorter than the full visible-near-infrared range (VIS-NIR; 400 to 2499 nm), and a wet soil spectra model that can estimate the effects of water content on soil reflectance spectra given the dry spectrum predicted by the SOGM. The SOGM was up-scaled by coupling with the Helios 3D plant modeling software, which allowed for generation of synthetic aerial images of simulated soil and plant scenes. It can also be easily integrated with soil-plant radiation model used for remote sensin research like PROSAIL. The testing results of the SOGM on new datasets that not included in model training proved that the model can generate reasonable soil reflectance spectra based on available property inputs. The presented models are openly accessible on: //github.com/GEMINI-Breeding/SOGM_soil_spectra_simulation.

In this chapter, we address the challenge of exploring the posterior distributions of Bayesian inverse problems with computationally intensive forward models. We consider various multivariate proposal distributions, and compare them with single-site Metropolis updates. We show how fast, approximate models can be leveraged to improve the MCMC sampling efficiency.

In this paper, to the best of our knowledge, we make the first attempt at studying the parametric semilinear elliptic eigenvalue problems with the parametric coefficient and some power-type nonlinearities. The parametric coefficient is assumed to have an affine dependence on the countably many parameters with an appropriate class of sequences of functions. In this paper, we obtain the upper bound estimation for the mixed derivatives of the ground eigenpairs that has the same form obtained recently for the linear eigenvalue problem. The three most essential ingredients for this estimation are the parametric analyticity of the ground eigenpairs, the uniform boundedness of the ground eigenpairs, and the uniform positive differences between ground eigenvalues of linear operators. All these three ingredients need new techniques and a careful investigation of the nonlinear eigenvalue problem that will be presented in this paper. As an application, considering each parameter as a uniformly distributed random variable, we estimate the expectation of the eigenpairs using a randomly shifted quasi-Monte Carlo lattice rule and show the dimension-independent error bound.

This paper studies the $p$-biharmonic equation on graphs, which arises in point cloud processing and can be interpreted as a natural extension of the graph $p$-Laplacian from the perspective of hypergraph. The asymptotic behavior of the solution is investigated when the random geometric graph is considered and the number of data points goes to infinity. We show that the continuum limit is an appropriately weighted $p$-biharmonic equation with homogeneous Neumann boundary conditions. The result relies on the uniform $L^p$ estimates for solutions and gradients of nonlocal and graph Poisson equations. The $L^\infty$ estimates of solutions are also obtained as a byproduct.

In this article, we investigate some issues related to the quantification of uncertainties associated with the electrical properties of graphene nanoribbons. The approach is suited to understand the effects of missing information linked to the difficulty of fixing some material parameters, such as the band gap, and the strength of the applied electric field. In particular, we focus on the extension of particle Galerkin methods for kinetic equations in the case of the semiclassical Boltzmann equation for charge transport in graphene nanoribbons with uncertainties. To this end, we develop an efficient particle scheme which allows us to parallelize the computation and then, after a suitable generalization of the scheme to the case of random inputs, we present a Galerkin reformulation of the particle dynamics, obtained by means of a generalized polynomial chaos approach, which allows the reconstruction of the kinetic distribution. As a consequence, the proposed particle-based scheme preserves the physical properties and the positivity of the distribution function also in the presence of a complex scattering in the transport equation of electrons. The impact of the uncertainty of the band gap and applied field on the electrical current is analyzed.

Motivated by the widespread use of approximate derivatives in machine learning and optimization, we study inexact subgradient methods with non-vanishing additive errors and step sizes. In the nonconvex semialgebraic setting, under boundedness assumptions, we prove that the method provides points that eventually fluctuate close to the critical set at a distance proportional to $\epsilon^\rho$ where $\epsilon$ is the error in subgradient evaluation and $\rho$ relates to the geometry of the problem. In the convex setting, we provide complexity results for the averaged values. We also obtain byproducts of independent interest, such as descent-like lemmas for nonsmooth nonconvex problems and some results on the limit of affine interpolants of differential inclusions.

In this paper, to address the optimization problem on a compact matrix manifold, we introduce a novel algorithmic framework called the Transformed Gradient Projection (TGP) algorithm, using the projection onto this compact matrix manifold. Compared with the existing algorithms, the key innovation in our approach lies in the utilization of a new class of search directions and various stepsizes, including the Armijo, nonmonotone Armijo, and fixed stepsizes, to guide the selection of the next iterate. Our framework offers flexibility by encompassing the classical gradient projection algorithms as special cases, and intersecting the retraction-based line-search algorithms. Notably, our focus is on the Stiefel or Grassmann manifold, revealing that many existing algorithms in the literature can be seen as specific instances within our proposed framework, and this algorithmic framework also induces several new special cases. Then, we conduct a thorough exploration of the convergence properties of these algorithms, considering various search directions and stepsizes. To achieve this, we extensively analyze the geometric properties of the projection onto compact matrix manifolds, allowing us to extend classical inequalities related to retractions from the literature. Building upon these insights, we establish the weak convergence, convergence rate, and global convergence of TGP algorithms under three distinct stepsizes. In cases where the compact matrix manifold is the Stiefel or Grassmann manifold, our convergence results either encompass or surpass those found in the literature. Finally, through a series of numerical experiments, we observe that the TGP algorithms, owing to their increased flexibility in choosing search directions, outperform classical gradient projection and retraction-based line-search algorithms in several scenarios.

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