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With a categorical treatment D=0,1,...,J, the ubiquitous practice is making dummy variables D(1),...,D(J) to apply the OLS of an outcome Y on D(1),...,D(J) and covariates X. With m(d,X) being the X-heterogeneous effect of D(d) given X, this paper shows that, for "saturated models", the OLS D(d) slope is consistent for a sum of weighted averages of m(1,X),...,m(J,X) where the sum of the weights for m(d,X) is one whereas the sum of the weights for the other X-heterogeneous effects is zero. Hence, if all m(1,X),...,m(J,X) are constant with m(d,X)=b(d), then the OLS D(d) slope is consistent for b(d); otherwise, the OLS is inconsistent in saturated models, as heterogeneous effects of other categories "interfere". For unsaturated models, in general, OLS is inconsistent even for binary D. What can be done instead is the OLS of Y on D(d)-E{D(d)|X, D=0,d} using only the subsample D=0,d to find the effect of D(d) separately for each d=1,...,J. This subsample OLS is consistent for the "overlap-weight" average of m(d,X). Although we parametrize E{D(d)|X, D=0,d} for practicality, using Y-E(Y|X, D=0,d) or its variation instead of Y makes the OLS robust to misspecifications in E{D(d)|X, D=0,d}.

We present a new semi-external algorithm that builds the Burrows--Wheeler transform variant of Bauer et al. (a.k.a., BCR BWT) in linear expected time. Our method uses compression techniques to reduce computational costs when the input is massive and repetitive. Concretely, we build on induced suffix sorting (ISS) and resort to run-length and grammar compression to maintain our intermediate results in compact form. Our compression format not only saves space but also speeds up the required computations. Our experiments show important space and computation time savings when the text is repetitive. In moderate-size collections of real human genome assemblies (14.2 GB - 75.05 GB), our memory peak is, on average, 1.7x smaller than the peak of the state-of-the-art BCR BWT construction algorithm (\texttt{ropebwt2}), while running 5x faster. Our current implementation was also able to compute the BCR BWT of 400 real human genome assemblies (1.2 TB) in 41.21 hours using 118.83 GB of working memory (around 10\% of the input size). Interestingly, the results we report in the 1.2 TB file are dominated by the difficulties of scanning huge files under memory constraints (specifically, I/O operations). This fact indicates we can perform much better with a more careful implementation of our method, thus scaling to even bigger sizes efficiently.

Sparse Partial Least Squares (sPLS) is a common dimensionality reduction technique for data fusion, which projects data samples from two views by seeking linear combinations with a small number of variables with the maximum variance. However, sPLS extracts the combinations between two data sets with all data samples so that it cannot detect latent subsets of samples. To extend the application of sPLS by identifying a specific subset of samples and remove outliers, we propose an $\ell_\infty/\ell_0$-norm constrained weighted sparse PLS ($\ell_\infty/\ell_0$-wsPLS) method for joint sample and feature selection, where the $\ell_\infty/\ell_0$-norm constrains are used to select a subset of samples. We prove that the $\ell_\infty/\ell_0$-norm constrains have the Kurdyka-\L{ojasiewicz}~property so that a globally convergent algorithm is developed to solve it. Moreover, multi-view data with a same set of samples can be available in various real problems. To this end, we extend the $\ell_\infty/\ell_0$-wsPLS model and propose two multi-view wsPLS models for multi-view data fusion. We develop an efficient iterative algorithm for each multi-view wsPLS model and show its convergence property. As well as numerical and biomedical data experiments demonstrate the efficiency of the proposed methods.

CNNs and Transformers have their own advantages and both have been widely used for dense prediction in multi-task learning (MTL). Most of the current studies on MTL solely rely on CNN or Transformer. In this work, we present a novel MTL model by combining both merits of deformable CNN and query-based Transformer with shared gating for multi-task learning of dense prediction. This combination may offer a simple and efficient solution owing to its powerful and flexible task-specific learning and advantages of lower cost, less complexity and smaller parameters than the traditional MTL methods. We introduce deformable mixer Transformer with gating (DeMTG), a simple and effective encoder-decoder architecture up-to-date that incorporates the convolution and attention mechanism in a unified network for MTL. It is exquisitely designed to use advantages of each block, and provide deformable and comprehensive features for all tasks from local and global perspective. First, the deformable mixer encoder contains two types of operators: the channel-aware mixing operator leveraged to allow communication among different channels, and the spatial-aware deformable operator with deformable convolution applied to efficiently sample more informative spatial locations. Second, the task-aware gating transformer decoder is used to perform the task-specific predictions, in which task interaction block integrated with self-attention is applied to capture task interaction features, and the task query block integrated with gating attention is leveraged to select corresponding task-specific features. Further, the experiment results demonstrate that the proposed DeMTG uses fewer GFLOPs and significantly outperforms current Transformer-based and CNN-based competitive models on a variety of metrics on three dense prediction datasets. Our code and models are available at //github.com/yangyangxu0/DeMTG.

The Skolem problem is a long-standing open problem in linear dynamical systems: can a linear recurrence sequence (LRS) ever reach 0 from a given initial configuration? Similarly, the positivity problem asks whether the LRS stays positive from an initial configuration. Deciding Skolem (or positivity) has been open for half a century: the best known decidability results are for LRS with special properties (e.g., low order recurrences). But these problems are easier for "uninitialized" variants, where the initial configuration is not fixed but can vary arbitrarily: checking if there is an initial configuration from which the LRS stays positive can be decided in polynomial time (Tiwari in 2004, Braverman in 2006). In this paper, we consider problems that lie between the initialized and uninitialized variant. More precisely, we ask if 0 (resp. negative numbers) can be avoided from every initial configuration in a neighborhood of a given initial configuration. This can be considered as a robust variant of the Skolem (resp. positivity) problem. We show that these problems lie at the frontier of decidability: if the neighbourhood is given as part of the input, then robust Skolem and robust positivity are Diophantine hard, i.e., solving either would entail major breakthrough in Diophantine approximations, as happens for (non-robust) positivity. However, if one asks whether such a neighbourhood exists, then the problems turn out to be decidable with PSPACE complexity. Our techniques also allow us to tackle robustness for ultimate positivity, which asks whether there is a bound on the number of steps after which the LRS remains positive. There are two variants depending on whether we ask for a "uniform" bound on this number of steps. For the non-uniform variant, when the neighbourhood is open, the problem turns out to be tractable, even when the neighbourhood is given as input.

Foundation models, such as OpenAI's GPT-3 and GPT-4, Meta's LLaMA, and Google's PaLM2, have revolutionized the field of artificial intelligence. A notable paradigm shift has been the advent of the Segment Anything Model (SAM), which has exhibited a remarkable capability to segment real-world objects, trained on 1 billion masks and 11 million images. Although SAM excels in general object segmentation, it lacks the intrinsic ability to detect salient objects, resulting in suboptimal performance in this domain. To address this challenge, we present the Segment Salient Object Model (SSOM), an innovative approach that adaptively fine-tunes SAM for salient object detection by harnessing the low-rank structure inherent in deep learning. Comprehensive qualitative and quantitative evaluations across five challenging RGB benchmark datasets demonstrate the superior performance of our approach, surpassing state-of-the-art methods.

We propose an efficient distributed out-of-memory implementation of the Non-negative Matrix Factorization (NMF) algorithm for heterogeneous high-performance-computing (HPC) systems. The proposed implementation is based on prior work on NMFk, which can perform automatic model selection and extract latent variables and patterns from data. In this work, we extend NMFk by adding support for dense and sparse matrix operation on multi-node, multi-GPU systems. The resulting algorithm is optimized for out-of-memory (OOM) problems where the memory required to factorize a given matrix is greater than the available GPU memory. Memory complexity is reduced by batching/tiling strategies, and sparse and dense matrix operations are significantly accelerated with GPU cores (or tensor cores when available). Input/Output (I/O) latency associated with batch copies between host and device is hidden using CUDA streams to overlap data transfers and compute asynchronously, and latency associated with collective communications (both intra-node and inter-node) is reduced using optimized NVIDIA Collective Communication Library NCCL based communicators. Benchmark results show significant improvement, from 32X to 76x speedup, with the new implementation using GPUs over the CPU-based NMFk. Good weak scaling was demonstrated on up to 4096 multi-GPU cluster nodes with approximately 25,000 GPUs when decomposing a dense 340 Terabyte-size matrix and an 11 Exabyte-size sparse matrix of density 10e-6.

This paper presents an exhaustive quantitative and qualitative evaluation of Large Language Models (LLMs) for Knowledge Graph (KG) construction and reasoning. We employ eight distinct datasets that encompass aspects including entity, relation and event extraction, link prediction, and question answering. Empirically, our findings suggest that GPT-4 outperforms ChatGPT in the majority of tasks and even surpasses fine-tuned models in certain reasoning and question-answering datasets. Moreover, our investigation extends to the potential generalization ability of LLMs for information extraction, which culminates in the presentation of the Virtual Knowledge Extraction task and the development of the VINE dataset. Drawing on these empirical findings, we further propose AutoKG, a multi-agent-based approach employing LLMs for KG construction and reasoning, which aims to chart the future of this field and offer exciting opportunities for advancement. We anticipate that our research can provide invaluable insights for future undertakings of KG\footnote{Code and datasets will be available in //github.com/zjunlp/AutoKG.

Weakly-Supervised Object Detection (WSOD) and Localization (WSOL), i.e., detecting multiple and single instances with bounding boxes in an image using image-level labels, are long-standing and challenging tasks in the CV community. With the success of deep neural networks in object detection, both WSOD and WSOL have received unprecedented attention. Hundreds of WSOD and WSOL methods and numerous techniques have been proposed in the deep learning era. To this end, in this paper, we consider WSOL is a sub-task of WSOD and provide a comprehensive survey of the recent achievements of WSOD. Specifically, we firstly describe the formulation and setting of the WSOD, including the background, challenges, basic framework. Meanwhile, we summarize and analyze all advanced techniques and training tricks for improving detection performance. Then, we introduce the widely-used datasets and evaluation metrics of WSOD. Lastly, we discuss the future directions of WSOD. We believe that these summaries can help pave a way for future research on WSOD and WSOL.

Few-shot Knowledge Graph (KG) completion is a focus of current research, where each task aims at querying unseen facts of a relation given its few-shot reference entity pairs. Recent attempts solve this problem by learning static representations of entities and references, ignoring their dynamic properties, i.e., entities may exhibit diverse roles within task relations, and references may make different contributions to queries. This work proposes an adaptive attentional network for few-shot KG completion by learning adaptive entity and reference representations. Specifically, entities are modeled by an adaptive neighbor encoder to discern their task-oriented roles, while references are modeled by an adaptive query-aware aggregator to differentiate their contributions. Through the attention mechanism, both entities and references can capture their fine-grained semantic meanings, and thus render more expressive representations. This will be more predictive for knowledge acquisition in the few-shot scenario. Evaluation in link prediction on two public datasets shows that our approach achieves new state-of-the-art results with different few-shot sizes.