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The interest in network analysis of bibliographic data has grown substantially in recent years, yet comprehensive statistical models for examining the complete dynamics of scientific networks based on bibliographic data are generally lacking. Current empirical studies often focus on models restricting analysis either to paper citation networks (paper-by-paper) or author networks (author-by-author). However, such networks encompass not only direct connections between papers, but also indirect relationships between the references of papers connected by a citation link. In this paper, we extend recently developed relational hyperevent models (RHEM) for analyzing scientific networks. We introduce new covariates representing theoretically meaningful and empirically interesting sub-network configurations. The model accommodates testing hypotheses considering: (i) the polyadic nature of scientific publication events, and (ii) the interdependencies between authors and references of current and prior papers. We implement the model using purpose-built, publicly available open-source software, demonstrating its empirical value in an analysis of a large publicly available scientific network dataset. Assessing the relative strength of various effects reveals that both the hyperedge structure of publication events, as well as the interconnection between authors and references significantly improve our understanding and interpretation of collaborative scientific production.

We consider the estimation of the cumulative hazard function, and equivalently the distribution function, with censored data under a setup that preserves the privacy of the survival database. This is done through a $\alpha$-locally differentially private mechanism for the failure indicators and by proposing a non-parametric kernel estimator for the cumulative hazard function that remains consistent under the privatization. Under mild conditions, we also prove lowers bounds for the minimax rates of convergence and show that estimator is minimax optimal under a well-chosen bandwidth.

The Koopman operator serves as the theoretical backbone for machine learning of dynamical control systems, where the operator is heuristically approximated by extended dynamic mode decomposition (EDMD). In this paper, we propose Stability- and certificate-oriented EDMD (SafEDMD): a novel EDMD-based learning architecture which comes along with rigorous certificates, resulting in a reliable surrogate model generated in a data-driven fashion. To ensure trustworthiness of SafEDMD, we derive proportional error bounds, which vanish at the origin and are tailored for control tasks, leading to certified controller design based on semi-definite programming. We illustrate the developed machinery by means of several benchmark examples and highlight the advantages over state-of-the-art methods.

Flow-based models are widely used in generative tasks, including normalizing flow, where a neural network transports from a data distribution $P$ to a normal distribution. This work develops a flow-based model that transports from $P$ to an arbitrary $Q$ where both distributions are only accessible via finite samples. We propose to learn the dynamic optimal transport between $P$ and $Q$ by training a flow neural network. The model is trained to optimally find an invertible transport map between $P$ and $Q$ by minimizing the transport cost. The trained optimal transport flow subsequently allows for performing many downstream tasks, including infinitesimal density ratio estimation (DRE) and distribution interpolation in the latent space for generative models. The effectiveness of the proposed model on high-dimensional data is demonstrated by strong empirical performance on high-dimensional DRE, OT baselines, and image-to-image translation.

For a sequence of random structures with $n$-element domains over a relational signature, we define its first order (FO) complexity as a certain subset in the Banach space $\ell^{\infty}/c_0$. The well-known FO zero-one law and FO convergence law correspond to FO complexities equal to $\{0,1\}$ and a subset of $\mathbb{R}$, respectively. We present a hierarchy of FO complexity classes, introduce a stochastic FO reduction that allows to transfer complexity results between different random structures, and deduce using this tool several new logical limit laws for binomial random structures. Finally, we introduce a conditional distribution on graphs, subject to a FO sentence $\varphi$, that generalises certain well-known random graph models, show instances of this distribution for every complexity class, and prove that the set of all $\varphi$ validating 0--1 law is not recursively enumerable.

Solving high dimensional partial differential equations (PDEs) has historically posed a considerable challenge when utilizing conventional numerical methods, such as those involving domain meshes. Recent advancements in the field have seen the emergence of neural PDE solvers, leveraging deep networks to effectively tackle high dimensional PDE problems. This study introduces Inf-SupNet, a model-based unsupervised learning approach designed to acquire solutions for a specific category of elliptic PDEs. The fundamental concept behind Inf-SupNet involves incorporating the inf-sup formulation of the underlying PDE into the loss function. The analysis reveals that the global solution error can be bounded by the sum of three distinct errors: the numerical integration error, the duality gap of the loss function (training error), and the neural network approximation error for functions within Sobolev spaces. To validate the efficacy of the proposed method, numerical experiments conducted in high dimensions demonstrate its stability and accuracy across various boundary conditions, as well as for both semi-linear and nonlinear PDEs.

We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.

When and why can a neural network be successfully trained? This article provides an overview of optimization algorithms and theory for training neural networks. First, we discuss the issue of gradient explosion/vanishing and the more general issue of undesirable spectrum, and then discuss practical solutions including careful initialization and normalization methods. Second, we review generic optimization methods used in training neural networks, such as SGD, adaptive gradient methods and distributed methods, and theoretical results for these algorithms. Third, we review existing research on the global issues of neural network training, including results on bad local minima, mode connectivity, lottery ticket hypothesis and infinite-width analysis.

Graph representation learning for hypergraphs can be used to extract patterns among higher-order interactions that are critically important in many real world problems. Current approaches designed for hypergraphs, however, are unable to handle different types of hypergraphs and are typically not generic for various learning tasks. Indeed, models that can predict variable-sized heterogeneous hyperedges have not been available. Here we develop a new self-attention based graph neural network called Hyper-SAGNN applicable to homogeneous and heterogeneous hypergraphs with variable hyperedge sizes. We perform extensive evaluations on multiple datasets, including four benchmark network datasets and two single-cell Hi-C datasets in genomics. We demonstrate that Hyper-SAGNN significantly outperforms the state-of-the-art methods on traditional tasks while also achieving great performance on a new task called outsider identification. Hyper-SAGNN will be useful for graph representation learning to uncover complex higher-order interactions in different applications.

Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of several anatomical structures (ranging from the large organs to thin vessels) can achieve competitive segmentation results, while avoiding the need for handcrafting features or training class-specific models. To this end, we propose a two-stage, coarse-to-fine approach that will first use a 3D FCN to roughly define a candidate region, which will then be used as input to a second 3D FCN. This reduces the number of voxels the second FCN has to classify to ~10% and allows it to focus on more detailed segmentation of the organs and vessels. We utilize training and validation sets consisting of 331 clinical CT images and test our models on a completely unseen data collection acquired at a different hospital that includes 150 CT scans, targeting three anatomical organs (liver, spleen, and pancreas). In challenging organs such as the pancreas, our cascaded approach improves the mean Dice score from 68.5 to 82.2%, achieving the highest reported average score on this dataset. We compare with a 2D FCN method on a separate dataset of 240 CT scans with 18 classes and achieve a significantly higher performance in small organs and vessels. Furthermore, we explore fine-tuning our models to different datasets. Our experiments illustrate the promise and robustness of current 3D FCN based semantic segmentation of medical images, achieving state-of-the-art results. Our code and trained models are available for download: //github.com/holgerroth/3Dunet_abdomen_cascade.