The Segment Anything Model (SAM) is a deep neural network foundational model designed to perform instance segmentation which has gained significant popularity given its zero-shot segmentation ability. SAM operates by generating masks based on various input prompts such as text, bounding boxes, points, or masks, introducing a novel methodology to overcome the constraints posed by dataset-specific scarcity. While SAM is trained on an extensive dataset, comprising ~11M images, it mostly consists of natural photographic images with only very limited images from other modalities. Whilst the rapid progress in visual infrared surveillance and X-ray security screening imaging technologies, driven forward by advances in deep learning, has significantly enhanced the ability to detect, classify and segment objects with high accuracy, it is not evident if the SAM zero-shot capabilities can be transferred to such modalities. This work assesses SAM capabilities in segmenting objects of interest in the X-ray/infrared modalities. Our approach reuses the pre-trained SAM with three different prompts: bounding box, centroid and random points. We present quantitative/qualitative results to showcase the performance on selected datasets. Our results show that SAM can segment objects in the X-ray modality when given a box prompt, but its performance varies for point prompts. Specifically, SAM performs poorly in segmenting slender objects and organic materials, such as plastic bottles. We find that infrared objects are also challenging to segment with point prompts given the low-contrast nature of this modality. This study shows that while SAM demonstrates outstanding zero-shot capabilities with box prompts, its performance ranges from moderate to poor for point prompts, indicating that special consideration on the cross-modal generalisation of SAM is needed when considering use on X-ray/infrared imagery.
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Cardinality Estimation over Knowledge Graphs (KG) is crucial for query optimization, yet remains a challenging task due to the semi-structured nature and complex correlations of typical Knowledge Graphs. In this work, we propose GNCE, a novel approach that leverages knowledge graph embeddings and Graph Neural Networks (GNN) to accurately predict the cardinality of conjunctive queries. GNCE first creates semantically meaningful embeddings for all entities in the KG, which are then integrated into the given query, which is processed by a GNN to estimate the cardinality of the query. We evaluate GNCE on several KGs in terms of q-Error and demonstrate that it outperforms state-of-the-art approaches based on sampling, summaries, and (machine) learning in terms of estimation accuracy while also having lower execution time and less parameters. Additionally, we show that GNCE can inductively generalise to unseen entities, making it suitable for use in dynamic query processing scenarios. Our proposed approach has the potential to significantly improve query optimization and related applications that rely on accurate cardinality estimates of conjunctive queries.
GFlowNets are probabilistic models that sequentially generate compositional structures through a stochastic policy. Among GFlowNets, temperature-conditional GFlowNets can introduce temperature-based controllability for exploration and exploitation. We propose \textit{Logit-scaling GFlowNets} (Logit-GFN), a novel architectural design that greatly accelerates the training of temperature-conditional GFlowNets. It is based on the idea that previously proposed approaches introduced numerical challenges in the deep network training, since different temperatures may give rise to very different gradient profiles as well as magnitudes of the policy's logits. We find that the challenge is greatly reduced if a learned function of the temperature is used to scale the policy's logits directly. Also, using Logit-GFN, GFlowNets can be improved by having better generalization capabilities in offline learning and mode discovery capabilities in online learning, which is empirically verified in various biological and chemical tasks. Our code is available at \url{//github.com/dbsxodud-11/logit-gfn}
Scaled Dot Product Attention (SDPA) is the backbone of many modern deep-learning models. It is so versatile that it has been used in natural language, vision, and multi-modal domains with very little change compared to its original formulation. This paper discusses why the current formulation is inefficient by delving into the mathematical details of the attention mechanism. We propose three improvements to mitigate these inefficiencies, thereby, introducing three enhanced attention mechanisms: Optimised, Efficient, and Super Attention. Optimised and Efficient Attention have one and two matrix multiplications fewer per head, respectively, and 25% and 50% fewer parameters, respectively, than standard SDPA, but perform similarly to standard SDPA in both vision and natural language tasks. They can be used in all applications where SDPA is used while offering smaller model sizes and faster training and inference without noticeable loss in performance. Super Attention introduces a new linear transformation on the values, transforming them from the left. It outperforms standard SPDA on vision and natural language tasks by up to 17% while having one fewer matrix multiplication per head and 25% fewer parameters than standard SDPA. Consequently, it is also faster than standard SDPA. Super Attention is ideal in applications where the attention layer's context length is fixed, such as Vision Transformers. In addition to providing mathematical reasoning, we evaluate the presented attention mechanisms on several datasets including MNIST, CIFAR100, ImageNet, IMDB Movie Reviews, and Amazon Reviews datasets, as well as combined Europarl and Anki English-Spanish datasets for neural machine translation.
Deep neural networks (DNNs) can easily be cheated by some imperceptible but purposeful noise added to images, and erroneously classify them. Previous defensive work mostly focused on retraining the models or detecting the noise, but has either shown limited success rates or been attacked by new adversarial examples. Instead of focusing on adversarial images or the interior of DNN models, we observed that adversarial examples generated by different algorithms can be identified based on the output of DNNs (logits). Logit can serve as an exterior feature to train detectors. Then, we propose HOLMES (Hierarchically Organized Light-weight Multiple dEtector System) to reinforce DNNs by detecting potential adversarial examples to minimize the threats they may bring in practical. HOLMES is able to distinguish \textit{unseen} adversarial examples from multiple attacks with high accuracy and low false positive rates than single detector systems even in an adaptive model. To ensure the diversity and randomness of detectors in HOLMES, we use two methods: training dedicated detectors for each label and training detectors with top-k logits. Our effective and inexpensive strategies neither modify original DNN models nor require its internal parameters. HOLMES is not only compatible with all kinds of learning models (even only with external APIs), but also complementary to other defenses to achieve higher detection rates (may also fully protect the system against various adversarial examples).
Graph neural networks (GNNs) have been demonstrated to be a powerful algorithmic model in broad application fields for their effectiveness in learning over graphs. To scale GNN training up for large-scale and ever-growing graphs, the most promising solution is distributed training which distributes the workload of training across multiple computing nodes. However, the workflows, computational patterns, communication patterns, and optimization techniques of distributed GNN training remain preliminarily understood. In this paper, we provide a comprehensive survey of distributed GNN training by investigating various optimization techniques used in distributed GNN training. First, distributed GNN training is classified into several categories according to their workflows. In addition, their computational patterns and communication patterns, as well as the optimization techniques proposed by recent work are introduced. Second, the software frameworks and hardware platforms of distributed GNN training are also introduced for a deeper understanding. Third, distributed GNN training is compared with distributed training of deep neural networks, emphasizing the uniqueness of distributed GNN training. Finally, interesting issues and opportunities in this field are discussed.
We consider the problem of explaining the predictions of graph neural networks (GNNs), which otherwise are considered as black boxes. Existing methods invariably focus on explaining the importance of graph nodes or edges but ignore the substructures of graphs, which are more intuitive and human-intelligible. In this work, we propose a novel method, known as SubgraphX, to explain GNNs by identifying important subgraphs. Given a trained GNN model and an input graph, our SubgraphX explains its predictions by efficiently exploring different subgraphs with Monte Carlo tree search. To make the tree search more effective, we propose to use Shapley values as a measure of subgraph importance, which can also capture the interactions among different subgraphs. To expedite computations, we propose efficient approximation schemes to compute Shapley values for graph data. Our work represents the first attempt to explain GNNs via identifying subgraphs explicitly and directly. Experimental results show that our SubgraphX achieves significantly improved explanations, while keeping computations at a reasonable level.
Deep neural networks have revolutionized many machine learning tasks in power systems, ranging from pattern recognition to signal processing. The data in these tasks is typically represented in Euclidean domains. Nevertheless, there is an increasing number of applications in power systems, where data are collected from non-Euclidean domains and represented as the graph-structured data with high dimensional features and interdependency among nodes. The complexity of graph-structured data has brought significant challenges to the existing deep neural networks defined in Euclidean domains. Recently, many studies on extending deep neural networks for graph-structured data in power systems have emerged. In this paper, a comprehensive overview of graph neural networks (GNNs) in power systems is proposed. Specifically, several classical paradigms of GNNs structures (e.g., graph convolutional networks, graph recurrent neural networks, graph attention networks, graph generative networks, spatial-temporal graph convolutional networks, and hybrid forms of GNNs) are summarized, and key applications in power systems such as fault diagnosis, power prediction, power flow calculation, and data generation are reviewed in detail. Furthermore, main issues and some research trends about the applications of GNNs in power systems are discussed.
Deep neural networks (DNNs) are successful in many computer vision tasks. However, the most accurate DNNs require millions of parameters and operations, making them energy, computation and memory intensive. This impedes the deployment of large DNNs in low-power devices with limited compute resources. Recent research improves DNN models by reducing the memory requirement, energy consumption, and number of operations without significantly decreasing the accuracy. This paper surveys the progress of low-power deep learning and computer vision, specifically in regards to inference, and discusses the methods for compacting and accelerating DNN models. The techniques can be divided into four major categories: (1) parameter quantization and pruning, (2) compressed convolutional filters and matrix factorization, (3) network architecture search, and (4) knowledge distillation. We analyze the accuracy, advantages, disadvantages, and potential solutions to the problems with the techniques in each category. We also discuss new evaluation metrics as a guideline for future research.
In this paper, we adopt 3D Convolutional Neural Networks to segment volumetric medical images. Although deep neural networks have been proven to be very effective on many 2D vision tasks, it is still challenging to apply them to 3D tasks due to the limited amount of annotated 3D data and limited computational resources. We propose a novel 3D-based coarse-to-fine framework to effectively and efficiently tackle these challenges. The proposed 3D-based framework outperforms the 2D counterpart to a large margin since it can leverage the rich spatial infor- mation along all three axes. We conduct experiments on two datasets which include healthy and pathological pancreases respectively, and achieve the current state-of-the-art in terms of Dice-S{\o}rensen Coefficient (DSC). On the NIH pancreas segmentation dataset, we outperform the previous best by an average of over 2%, and the worst case is improved by 7% to reach almost 70%, which indicates the reliability of our framework in clinical applications.
Convolutional networks (ConvNets) have achieved great successes in various challenging vision tasks. However, the performance of ConvNets would degrade when encountering the domain shift. The domain adaptation is more significant while challenging in the field of biomedical image analysis, where cross-modality data have largely different distributions. Given that annotating the medical data is especially expensive, the supervised transfer learning approaches are not quite optimal. In this paper, we propose an unsupervised domain adaptation framework with adversarial learning for cross-modality biomedical image segmentations. Specifically, our model is based on a dilated fully convolutional network for pixel-wise prediction. Moreover, we build a plug-and-play domain adaptation module (DAM) to map the target input to features which are aligned with source domain feature space. A domain critic module (DCM) is set up for discriminating the feature space of both domains. We optimize the DAM and DCM via an adversarial loss without using any target domain label. Our proposed method is validated by adapting a ConvNet trained with MRI images to unpaired CT data for cardiac structures segmentations, and achieved very promising results.
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