A population-averaged additive subdistribution hazards model is proposed to assess the marginal effects of covariates on the cumulative incidence function and to analyze correlated failure time data subject to competing risks. This approach extends the population-averaged additive hazards model by accommodating potentially dependent censoring due to competing events other than the event of interest. Assuming an independent working correlation structure, an estimating equations approach is outlined to estimate the regression coefficients and a new sandwich variance estimator is proposed. The proposed sandwich variance estimator accounts for both the correlations between failure times and between the censoring times, and is robust to misspecification of the unknown dependency structure within each cluster. We further develop goodness-of-fit tests to assess the adequacy of the additive structure of the subdistribution hazards for the overall model and each covariate. Simulation studies are conducted to investigate the performance of the proposed methods in finite samples. We illustrate our methods using data from the STrategies to Reduce Injuries and Develop confidence in Elders (STRIDE) trial.
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Combinatorial and algebraic perspectives on the marginal independence structure of Bayesian networks
We consider the problem of estimating the marginal independence structure of a Bayesian network from observational data in the form of an undirected graph called the unconditional dependence graph. We show that unconditional dependence graphs of Bayesian networks correspond to the graphs having equal independence and intersection numbers. Using this observation, a Gr\"obner basis for a toric ideal associated to unconditional dependence graphs of Bayesian networks is given and then extended by additional binomial relations to connect the space of all such graphs. An MCMC method, called GrUES (Gr\"obner-based Unconditional Equivalence Search), is implemented based on the resulting moves and applied to synthetic Gaussian data. GrUES recovers the true marginal independence structure via a penalized maximum likelihood or MAP estimate at a higher rate than simple independence tests while also yielding an estimate of the posterior, for which the $20\%$ HPD credible sets include the true structure at a high rate for data-generating graphs with density at least $0.5$.
Validation metrics are key for the reliable tracking of scientific progress and for bridging the current chasm between artificial intelligence (AI) research and its translation into practice. However, increasing evidence shows that particularly in image analysis, metrics are often chosen inadequately in relation to the underlying research problem. This could be attributed to a lack of accessibility of metric-related knowledge: While taking into account the individual strengths, weaknesses, and limitations of validation metrics is a critical prerequisite to making educated choices, the relevant knowledge is currently scattered and poorly accessible to individual researchers. Based on a multi-stage Delphi process conducted by a multidisciplinary expert consortium as well as extensive community feedback, the present work provides the first reliable and comprehensive common point of access to information on pitfalls related to validation metrics in image analysis. Focusing on biomedical image analysis but with the potential of transfer to other fields, the addressed pitfalls generalize across application domains and are categorized according to a newly created, domain-agnostic taxonomy. To facilitate comprehension, illustrations and specific examples accompany each pitfall. As a structured body of information accessible to researchers of all levels of expertise, this work enhances global comprehension of a key topic in image analysis validation.
We construct a family of Markov decision processes for which the policy iteration algorithm needs an exponential number of improving switches with Dantzig's rule, with Bland's rule, and with the Largest Increase pivot rule. This immediately translates to a family of linear programs for which the simplex algorithm needs an exponential number of pivot steps with the same three pivot rules. Our results yield a unified construction that simultaneously reproduces well-known lower bounds for these classical pivot rules, and we are able to infer that any (deterministic or randomized) combination of them cannot avoid an exponential worst-case behavior. Regarding the policy iteration algorithm, pivot rules typically switch multiple edges simultaneously and our lower bound for Dantzig's rule and the Largest Increase rule, which perform only single switches, seem novel. Regarding the simplex algorithm, the individual lower bounds were previously obtained separately via deformed hypercube constructions. In contrast to previous bounds for the simplex algorithm via Markov decision processes, our rigorous analysis is reasonably concise.
This paper investigates the problem of estimating the larger location parameter of two general location families from a decision-theoretic perspective. In this estimation problem, we use the criteria of minimizing the risk function and the Pitman closeness under a general bowl-shaped loss function. Inadmissibility of a general location and equivariant estimators is provided. We prove that a natural estimator (analogue of the BLEE of unordered location parameters) is inadmissible, under certain conditions on underlying densities, and propose a dominating estimator. We also derive a class of improved estimators using the Kubokawa's IERD approach and observe that the boundary estimator of this class is the Brewster-Zidek type estimator. Additionally, under the generalized Pitman criterion, we show that the natural estimator is inadmissible and obtain improved estimators. The results are implemented for different loss functions, and explicit expressions for the dominating estimators are provided. We explore the applications of these results to for exponential and normal distribution under specified loss functions. A simulation is also conducted to compare the risk performance of the proposed estimators. Finally, we present a real-life data analysis to illustrate the practical applications of the paper's findings.
Multi-level modeling is an important approach for analyzing complex survey data using multi-stage sampling. However, estimation of multi-level models can be challenging when we combine several datasets with distinct hierarchies with sampling weights. This paper presents a method for combining multiple datasets with different hierarchical structures due to distinct informative sampling designs for the same survey. To develop an approach with complete generality, we propose to define a pseudo-cluster, a cluster containing only a singleton observation, to unify the data structure and thereby enable estimation of multi-level models incorporating sampling weights across the combined sample. We justify incorporating sampling weights at each level of the hierarchical model and in doing-so define a pseudo-likelihood estimation procedure. Simulation studies are used to illustrate the effect of incorporating sampling designs in this challenging multi-level modeling scenario. We demonstrate in the simulation studies that considering a linear mixed model with sampling weights provides unbiased estimates of model parameters and enhances the estimation of the variance components of the random effects. The proposed method is illustrated through a novel application from the National Survey of Healthcare Organizations and Systems that sought to determine which organizational characteristics or traits, as measured in the surveys, have the strongest average relationship to the percentage of depression and anxiety diagnoses in physician practices in the US.
We investigate the combinatorics of max-pooling layers, which are functions that downsample input arrays by taking the maximum over shifted windows of input coordinates, and which are commonly used in convolutional neural networks. We obtain results on the number of linearity regions of these functions by equivalently counting the number of vertices of certain Minkowski sums of simplices. We characterize the faces of such polytopes and obtain generating functions and closed formulas for the number of vertices and facets in a 1D max-pooling layer depending on the size of the pooling windows and stride, and for the number of vertices in a special case of 2D max-pooling.
Principal variables analysis (PVA) is a technique for selecting a subset of variables that capture as much of the information in a dataset as possible. Existing approaches for PVA are based on the Pearson correlation matrix, which is not well-suited to describing the relationships between non-Gaussian variables. We propose a generalized approach to PVA enabling the use of different types of correlation, and we explore using Spearman, Gaussian copula, and polychoric correlations as alternatives to Pearson correlation when performing PVA. We compare performance in simulation studies varying the form of the true multivariate distribution over a wide range of possibilities. Our results show that on continuous non-Gaussian data, using generalized PVA with Gaussian copula or Spearman correlations provides a major improvement in performance compared to Pearson. Meanwhile, on ordinal data, generalized PVA with polychoric correlations outperforms the rest by a wide margin. We apply generalized PVA to a dataset of 102 clinical variables measured on individuals with X-linked dystonia parkinsonism (XDP), a rare neurodegenerative disorder, and we find that using different types of correlation yields substantively different sets of principal variables.
The autologistic actor attribute model, or ALAAM, is the social influence counterpart of the better-known exponential-family random graph model (ERGM) for social selection. Extensive experience with ERGMs has shown that the problem of near-degeneracy which often occurs with simple models can be overcome by using "geometrically weighted" or "alternating" statistics. In the much more limited empirical applications of ALAAMs to date, the problem of near-degeneracy, although theoretically expected, appears to have been less of an issue. In this work I present a comprehensive survey of ALAAM applications, showing that this model has to date only been used with relatively small networks, in which near-degeneracy does not appear to be a problem. I show near-degeneracy does occur in simple ALAAM models of larger empirical networks, define some geometrically weighted ALAAM statistics analogous to those for ERGM, and demonstrate that models with these statistics do not suffer from near-degeneracy and hence can be estimated where they could not be with the simple statistics.
We propose an approach to compute inner and outer-approximations of the sets of values satisfying constraints expressed as arbitrarily quantified formulas. Such formulas arise for instance when specifying important problems in control such as robustness, motion planning or controllers comparison. We propose an interval-based method which allows for tractable but tight approximations. We demonstrate its applicability through a series of examples and benchmarks using a prototype implementation.
Knowledge graphs (KGs) of real-world facts about entities and their relationships are useful resources for a variety of natural language processing tasks. However, because knowledge graphs are typically incomplete, it is useful to perform knowledge graph completion or link prediction, i.e. predict whether a relationship not in the knowledge graph is likely to be true. This paper serves as a comprehensive survey of embedding models of entities and relationships for knowledge graph completion, summarizing up-to-date experimental results on standard benchmark datasets and pointing out potential future research directions.
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