Describing the relationship between the variables in a study domain and modelling the data generating mechanism is a fundamental problem in many empirical sciences. Probabilistic graphical models are one common approach to tackle the problem. Learning the graphical structure for such models is computationally challenging and a fervent area of current research with a plethora of algorithms being developed. To facilitate the benchmarking of different methods, we present a novel Snakemake workflow, called Benchpress for producing scalable, reproducible, and platform-independent benchmarks of structure learning algorithms for probabilistic graphical models. Benchpress is interfaced via a simple JSON-file, which makes it accessible for all users, while the code is designed in a fully modular fashion to enable researchers to contribute additional methodologies. Benchpress currently provides an interface to a large number of state-of-the-art algorithms from libraries such as BDgraph, BiDAG, bnlearn, causal-learn, gCastle, GOBNILP, pcalg, r.blip, scikit-learn, TETRAD, and trilearn as well as a variety of methods for data generating models and performance evaluation. Alongside user-defined models and randomly generated datasets, the workflow also includes a number of standard datasets and graphical models from the literature, which may be included in a benchmarking study. We demonstrate the applicability of this workflow for learning Bayesian networks in five typical data scenarios. The source code and documentation is publicly available from //benchpressdocs.readthedocs.io.
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In causal inference with panel data under staggered adoption, the goal is to estimate and derive confidence intervals for potential outcomes and treatment effects. We propose a computationally efficient procedure, involving only simple matrix algebra and singular value decomposition. We derive non-asymptotic bounds on the entrywise error, establishing its proximity to a suitably scaled Gaussian variable. Despite its simplicity, our procedure turns out to be instance-optimal, in that our theoretical scaling matches a local instance-wise lower bound derived via a Bayesian Cram\'{e}r-Rao argument. Using our insights, we develop a data-driven procedure for constructing entrywise confidence intervals with pre-specified coverage guarantees. Our analysis is based on a general inferential toolbox for the SVD algorithm applied to the matrix denoising model, which might be of independent interest.
Despite the advancement in computational modeling towards brain tumor segmentation, of which several models have been developed, it is evident from the computational complexity of existing models which are still at an all-time high, that performance and efficiency under clinical application scenarios are limited. Therefore, this paper proposes a shallow encoder and decoder network named SEDNet for brain tumor segmentation. The proposed network is adapted from the U-Net structure. Though brain tumors do not assume complex structures like the task the traditional U-Net was designed for, their variance in appearance, shape, and ambiguity of boundaries makes it a compelling complex task to solve. SEDNet architecture design is inspired by the localized nature of brain tumors in brain images, thus consists of sufficient hierarchical convolutional blocks in the encoding pathway capable of learning the intrinsic features of brain tumors in brain slices, and a decoding pathway with selective skip path sufficient for capturing miniature local-level spatial features alongside the global-level features of brain tumor. SEDNet with the integration of the proposed preprocessing algorithm and optimization function on the BraTS2020 set reserved for testing achieves impressive dice and Hausdorff scores of 0.9308, 0.9451, 0.9026, and 0.7040, 1.2866, 0.7762 for non-enhancing tumor core (NTC), peritumoral edema (ED), and enhancing tumor (ET), respectively. Furthermore, through transfer learning with initialized SEDNet pre-trained weights, termed SEDNetX, a performance increase is observed. The dice and Hausdorff scores recorded are 0.9336, 0.9478, 0.9061, 0.6983, 1.2691, and 0.7711 for NTC, ED, and ET, respectively. With about 1.3 million parameters and impressive performance in comparison to the state-of-the-art, SEDNet(X) is shown to be computationally efficient for real-time clinical diagnosis.
Due to the ability of modeling relationships between two different types of entities, bipartite graphs are naturally employed in many real-world applications. Community Search in bipartite graphs is a fundamental problem and has gained much attention. However, existing studies focus on measuring the structural cohesiveness between two sets of vertices, while either completely ignoring the edge attributes or only considering one-dimensional importance in forming communities. In this paper, we introduce a novel community model, named edge-attributed skyline community (ESC), which not only preserves the structural cohesiveness but unravels the inherent dominance brought about by multi-dimensional attributes on the edges of bipartite graphs. To search the ESCs, we develop an elegant peeling algorithm by iteratively deleting edges with the minimum attribute in each dimension. In addition, we also devise a more efficient expanding algorithm to further reduce the search space and speed up the filtering of unpromising vertices, where a upper bound is proposed and proven. Extensive experiments on real-world large-scale datasets demonstrate the efficiency, effectiveness, and scalability of the proposed ESC search algorithms. A case study was conducted to compare with existing community models, substantiating that our approach facilitates the precision and diversity of results.
Data similarity (or distance) computation is a fundamental research topic which fosters a variety of similarity-based machine learning and data mining applications. In big data analytics, it is impractical to compute the exact similarity of data instances due to high computational cost. To this end, the Locality Sensitive Hashing (LSH) technique has been proposed to provide accurate estimators for various similarity measures between sets or vectors in an efficient manner without the learning process. Structured data (e.g., sequences, trees and graphs), which are composed of elements and relations between the elements, are commonly seen in the real world, but the traditional LSH algorithms cannot preserve the structure information represented as relations between elements. In order to conquer the issue, researchers have been devoted to the family of the hierarchical LSH algorithms. In this paper, we explore the present progress of the research into hierarchical LSH from the following perspectives: 1) Data structures, where we review various hierarchical LSH algorithms for three typical data structures and uncover their inherent connections; 2) Applications, where we review the hierarchical LSH algorithms in multiple application scenarios; 3) Challenges, where we discuss some potential challenges as future directions.
Image registration has traditionally been done using two distinct approaches: learning based methods, relying on robust deep neural networks, and optimization-based methods, applying complex mathematical transformations to warp images accordingly. Of course, both paradigms offer advantages and disadvantages, and, in this work, we seek to combine their respective strengths into a single streamlined framework, using the outputs of the learning based method as initial parameters for optimization while prioritizing computational power for the image pairs that offer the greatest loss. Our investigations showed improvements of up to 1.6% in test data, while maintaining the same inference time, and a substantial 1.0% points performance gain in deformation field smoothness.
The incredible development of federated learning (FL) has benefited various tasks in the domains of computer vision and natural language processing, and the existing frameworks such as TFF and FATE has made the deployment easy in real-world applications. However, federated graph learning (FGL), even though graph data are prevalent, has not been well supported due to its unique characteristics and requirements. The lack of FGL-related framework increases the efforts for accomplishing reproducible research and deploying in real-world applications. Motivated by such strong demand, in this paper, we first discuss the challenges in creating an easy-to-use FGL package and accordingly present our implemented package FederatedScope-GNN (FS-G), which provides (1) a unified view for modularizing and expressing FGL algorithms; (2) comprehensive DataZoo and ModelZoo for out-of-the-box FGL capability; (3) an efficient model auto-tuning component; and (4) off-the-shelf privacy attack and defense abilities. We validate the effectiveness of FS-G by conducting extensive experiments, which simultaneously gains many valuable insights about FGL for the community. Moreover, we employ FS-G to serve the FGL application in real-world E-commerce scenarios, where the attained improvements indicate great potential business benefits. We publicly release FS-G, as submodules of FederatedScope, at //github.com/alibaba/FederatedScope to promote FGL's research and enable broad applications that would otherwise be infeasible due to the lack of a dedicated package.
The existence of representative datasets is a prerequisite of many successful artificial intelligence and machine learning models. However, the subsequent application of these models often involves scenarios that are inadequately represented in the data used for training. The reasons for this are manifold and range from time and cost constraints to ethical considerations. As a consequence, the reliable use of these models, especially in safety-critical applications, is a huge challenge. Leveraging additional, already existing sources of knowledge is key to overcome the limitations of purely data-driven approaches, and eventually to increase the generalization capability of these models. Furthermore, predictions that conform with knowledge are crucial for making trustworthy and safe decisions even in underrepresented scenarios. This work provides an overview of existing techniques and methods in the literature that combine data-based models with existing knowledge. The identified approaches are structured according to the categories integration, extraction and conformity. Special attention is given to applications in the field of autonomous driving.
Generative commonsense reasoning which aims to empower machines to generate sentences with the capacity of reasoning over a set of concepts is a critical bottleneck for text generation. Even the state-of-the-art pre-trained language generation models struggle at this task and often produce implausible and anomalous sentences. One reason is that they rarely consider incorporating the knowledge graph which can provide rich relational information among the commonsense concepts. To promote the ability of commonsense reasoning for text generation, we propose a novel knowledge graph augmented pre-trained language generation model KG-BART, which encompasses the complex relations of concepts through the knowledge graph and produces more logical and natural sentences as output. Moreover, KG-BART can leverage the graph attention to aggregate the rich concept semantics that enhances the model generalization on unseen concept sets. Experiments on benchmark CommonGen dataset verify the effectiveness of our proposed approach by comparing with several strong pre-trained language generation models, particularly KG-BART outperforms BART by 5.80, 4.60, in terms of BLEU-3, 4. Moreover, we also show that the generated context by our model can work as background scenarios to benefit downstream commonsense QA tasks.
Conventionally, spatiotemporal modeling network and its complexity are the two most concentrated research topics in video action recognition. Existing state-of-the-art methods have achieved excellent accuracy regardless of the complexity meanwhile efficient spatiotemporal modeling solutions are slightly inferior in performance. In this paper, we attempt to acquire both efficiency and effectiveness simultaneously. First of all, besides traditionally treating H x W x T video frames as space-time signal (viewing from the Height-Width spatial plane), we propose to also model video from the other two Height-Time and Width-Time planes, to capture the dynamics of video thoroughly. Secondly, our model is designed based on 2D CNN backbones and model complexity is well kept in mind by design. Specifically, we introduce a novel multi-view fusion (MVF) module to exploit video dynamics using separable convolution for efficiency. It is a plug-and-play module and can be inserted into off-the-shelf 2D CNNs to form a simple yet effective model called MVFNet. Moreover, MVFNet can be thought of as a generalized video modeling framework and it can specialize to be existing methods such as C2D, SlowOnly, and TSM under different settings. Extensive experiments are conducted on popular benchmarks (i.e., Something-Something V1 & V2, Kinetics, UCF-101, and HMDB-51) to show its superiority. The proposed MVFNet can achieve state-of-the-art performance with 2D CNN's complexity.
The cross-domain recommendation technique is an effective way of alleviating the data sparsity in recommender systems by leveraging the knowledge from relevant domains. Transfer learning is a class of algorithms underlying these techniques. In this paper, we propose a novel transfer learning approach for cross-domain recommendation by using neural networks as the base model. We assume that hidden layers in two base networks are connected by cross mappings, leading to the collaborative cross networks (CoNet). CoNet enables dual knowledge transfer across domains by introducing cross connections from one base network to another and vice versa. CoNet is achieved in multi-layer feedforward networks by adding dual connections and joint loss functions, which can be trained efficiently by back-propagation. The proposed model is evaluated on two real-world datasets and it outperforms baseline models by relative improvements of 3.56\% in MRR and 8.94\% in NDCG, respectively.
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