1. Joint species distribution models (JSDMs) have gained considerable traction among ecologists over the past decade, due to their capacity to answer a wide range of questions at both the species- and the community-level. The family of generalized linear latent variable models in particular has proven popular for building JSDMs, being able to handle many response types including presence-absence data, biomass, overdispersed and/or zero-inflated counts. 2. We extend latent variable models to handle percent cover data, with vegetation, sessile invertebrate, and macroalgal cover data representing the prime examples of such data arising in community ecology. 3. Sparsity is a commonly encountered challenge with percent cover data. Responses are typically recorded as percentages covered per plot, though some species may be completely absent or present, i.e., have 0% or 100% cover respectively, rendering the use of beta distribution inadequate. 4. We propose two JSDMs suitable for percent cover data, namely a hurdle beta model and an ordered beta model. We compare the two proposed approaches to a beta distribution for shifted responses, transformed presence-absence data, and an ordinal model for percent cover classes. Results demonstrate the hurdle beta JSDM was generally the most accurate at retrieving the latent variables and predicting ecological percent cover data.
We study the problem of model selection in causal inference, specifically for conditional average treatment effect (CATE) estimation. Unlike machine learning, there is no perfect analogue of cross-validation for model selection as we do not observe the counterfactual potential outcomes. Towards this, a variety of surrogate metrics have been proposed for CATE model selection that use only observed data. However, we do not have a good understanding regarding their effectiveness due to limited comparisons in prior studies. We conduct an extensive empirical analysis to benchmark the surrogate model selection metrics introduced in the literature, as well as the novel ones introduced in this work. We ensure a fair comparison by tuning the hyperparameters associated with these metrics via AutoML, and provide more detailed trends by incorporating realistic datasets via generative modeling. Our analysis suggests novel model selection strategies based on careful hyperparameter selection of CATE estimators and causal ensembling.
Speech emotion recognition (SER) is constantly gaining attention in recent years due to its potential applications in diverse fields and thanks to the possibility offered by deep learning technologies. However, recent studies have shown that deep learning models can be vulnerable to adversarial attacks. In this paper, we systematically assess this problem by examining the impact of various adversarial white-box and black-box attacks on different languages and genders within the context of SER. We first propose a suitable methodology for audio data processing, feature extraction, and CNN-LSTM architecture. The observed outcomes highlighted the significant vulnerability of CNN-LSTM models to adversarial examples (AEs). In fact, all the considered adversarial attacks are able to significantly reduce the performance of the constructed models. Furthermore, when assessing the efficacy of the attacks, minor differences were noted between the languages analyzed as well as between male and female speech. In summary, this work contributes to the understanding of the robustness of CNN-LSTM models, particularly in SER scenarios, and the impact of AEs. Interestingly, our findings serve as a baseline for a) developing more robust algorithms for SER, b) designing more effective attacks, c) investigating possible defenses, d) improved understanding of the vocal differences between different languages and genders, and e) overall, enhancing our comprehension of the SER task.
Simultaneous localization and mapping (SLAM), i.e., the reconstruction of the environment represented by a (3D) map and the concurrent pose estimation, has made astonishing progress. Meanwhile, large scale applications aiming at the data collection in complex environments like factory halls or construction sites are becoming feasible. However, in contrast to small scale scenarios with building interiors separated to single rooms, shop floors or construction areas require measures at larger distances in potentially texture less areas under difficult illumination. Pose estimation is further aggravated since no GNSS measures are available as it is usual for such indoor applications. In our work, we realize data collection in a large factory hall by a robot system equipped with four stereo cameras as well as a 3D laser scanner. We apply our state-of-the-art LiDAR and visual SLAM approaches and discuss the respective pros and cons of the different sensor types for trajectory estimation and dense map generation in such an environment. Additionally, dense and accurate depth maps are generated by 3D Gaussian splatting, which we plan to use in the context of our project aiming on the automatic construction and site monitoring.
Test smells can pose difficulties during testing activities, such as poor maintainability, non-deterministic behavior, and incomplete verification. Existing research has extensively addressed test smells in automated software tests but little attention has been given to smells in natural language tests. While some research has identified and catalogued such smells, there is a lack of systematic approaches for their removal. Consequently, there is also a lack of tools to automatically identify and remove natural language test smells. This paper introduces a catalog of transformations designed to remove seven natural language test smells and a companion tool implemented using Natural Language Processing (NLP) techniques. Our work aims to enhance the quality and reliability of natural language tests during software development. The research employs a two-fold empirical strategy to evaluate its contributions. First, a survey involving 15 software testing professionals assesses the acceptance and usefulness of the catalog's transformations. Second, an empirical study evaluates our tool to remove natural language test smells by analyzing a sample of real-practice tests from the Ubuntu OS. The results indicate that software testing professionals find the transformations valuable. Additionally, the automated tool demonstrates a good level of precision, as evidenced by a F-Measure rate of 83.70%
Recent studies indicate that the noise characteristics of phasor measurement units (PMUs) can be more accurately described by non-Gaussian distributions. Consequently, estimation techniques based on Gaussian noise assumptions may produce poor results with PMU data. This paper considers the PMU based line parameter estimation (LPE) problem, and investigates the performance of four state-of-the-art techniques in solving this problem in presence of non-Gaussian measurement noise. The rigorous comparative analysis highlights the merits and demerits of each technique w.r.t. the LPE problem, and identifies conditions under which they are expected to give good results.
Graph neural networks (GNNs) have been demonstrated to be a powerful algorithmic model in broad application fields for their effectiveness in learning over graphs. To scale GNN training up for large-scale and ever-growing graphs, the most promising solution is distributed training which distributes the workload of training across multiple computing nodes. However, the workflows, computational patterns, communication patterns, and optimization techniques of distributed GNN training remain preliminarily understood. In this paper, we provide a comprehensive survey of distributed GNN training by investigating various optimization techniques used in distributed GNN training. First, distributed GNN training is classified into several categories according to their workflows. In addition, their computational patterns and communication patterns, as well as the optimization techniques proposed by recent work are introduced. Second, the software frameworks and hardware platforms of distributed GNN training are also introduced for a deeper understanding. Third, distributed GNN training is compared with distributed training of deep neural networks, emphasizing the uniqueness of distributed GNN training. Finally, interesting issues and opportunities in this field are discussed.
In pace with developments in the research field of artificial intelligence, knowledge graphs (KGs) have attracted a surge of interest from both academia and industry. As a representation of semantic relations between entities, KGs have proven to be particularly relevant for natural language processing (NLP), experiencing a rapid spread and wide adoption within recent years. Given the increasing amount of research work in this area, several KG-related approaches have been surveyed in the NLP research community. However, a comprehensive study that categorizes established topics and reviews the maturity of individual research streams remains absent to this day. Contributing to closing this gap, we systematically analyzed 507 papers from the literature on KGs in NLP. Our survey encompasses a multifaceted review of tasks, research types, and contributions. As a result, we present a structured overview of the research landscape, provide a taxonomy of tasks, summarize our findings, and highlight directions for future work.
We consider the problem of explaining the predictions of graph neural networks (GNNs), which otherwise are considered as black boxes. Existing methods invariably focus on explaining the importance of graph nodes or edges but ignore the substructures of graphs, which are more intuitive and human-intelligible. In this work, we propose a novel method, known as SubgraphX, to explain GNNs by identifying important subgraphs. Given a trained GNN model and an input graph, our SubgraphX explains its predictions by efficiently exploring different subgraphs with Monte Carlo tree search. To make the tree search more effective, we propose to use Shapley values as a measure of subgraph importance, which can also capture the interactions among different subgraphs. To expedite computations, we propose efficient approximation schemes to compute Shapley values for graph data. Our work represents the first attempt to explain GNNs via identifying subgraphs explicitly and directly. Experimental results show that our SubgraphX achieves significantly improved explanations, while keeping computations at a reasonable level.
Graph Neural Networks (GNNs) have recently become increasingly popular due to their ability to learn complex systems of relations or interactions arising in a broad spectrum of problems ranging from biology and particle physics to social networks and recommendation systems. Despite the plethora of different models for deep learning on graphs, few approaches have been proposed thus far for dealing with graphs that present some sort of dynamic nature (e.g. evolving features or connectivity over time). In this paper, we present Temporal Graph Networks (TGNs), a generic, efficient framework for deep learning on dynamic graphs represented as sequences of timed events. Thanks to a novel combination of memory modules and graph-based operators, TGNs are able to significantly outperform previous approaches being at the same time more computationally efficient. We furthermore show that several previous models for learning on dynamic graphs can be cast as specific instances of our framework. We perform a detailed ablation study of different components of our framework and devise the best configuration that achieves state-of-the-art performance on several transductive and inductive prediction tasks for dynamic graphs.
Detecting carried objects is one of the requirements for developing systems to reason about activities involving people and objects. We present an approach to detect carried objects from a single video frame with a novel method that incorporates features from multiple scales. Initially, a foreground mask in a video frame is segmented into multi-scale superpixels. Then the human-like regions in the segmented area are identified by matching a set of extracted features from superpixels against learned features in a codebook. A carried object probability map is generated using the complement of the matching probabilities of superpixels to human-like regions and background information. A group of superpixels with high carried object probability and strong edge support is then merged to obtain the shape of the carried object. We applied our method to two challenging datasets, and results show that our method is competitive with or better than the state-of-the-art.