In this paper, a robust weighted score for unbalanced data (ROWSU) is proposed for selecting the most discriminative feature for high dimensional gene expression binary classification with class-imbalance problem. The method addresses one of the most challenging problems of highly skewed class distributions in gene expression datasets that adversely affect the performance of classification algorithms. First, the training dataset is balanced by synthetically generating data points from minority class observations. Second, a minimum subset of genes is selected using a greedy search approach. Third, a novel weighted robust score, where the weights are computed by support vectors, is introduced to obtain a refined set of genes. The highest-scoring genes based on this approach are combined with the minimum subset of genes selected by the greedy search approach to form the final set of genes. The novel method ensures the selection of the most discriminative genes, even in the presence of skewed class distribution, thus improving the performance of the classifiers. The performance of the proposed ROWSU method is evaluated on $6$ gene expression datasets. Classification accuracy and sensitivity are used as performance metrics to compare the proposed ROWSU algorithm with several other state-of-the-art methods. Boxplots and stability plots are also constructed for a better understanding of the results. The results show that the proposed method outperforms the existing feature selection procedures based on classification performance from k nearest neighbours (kNN) and random forest (RF) classifiers.
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Event Causality Identification (ECI) refers to detect causal relations between events in texts. However, most existing studies focus on sentence-level ECI with high-resource language, leaving more challenging document-level ECI (DECI) with low-resource languages under-explored. In this paper, we propose a Heterogeneous Graph Interaction Model with Multi-granularity Contrastive Transfer Learning (GIMC) for zero-shot cross-lingual document-level ECI. Specifically, we introduce a heterogeneous graph interaction network to model the long-distance dependencies between events that are scattered over document. Then, to improve cross-lingual transferability of causal knowledge learned from source language, we propose a multi-granularity contrastive transfer learning module to align the causal representations across languages. Extensive experiments show our framework outperforms previous state-of-the-art model by 9.4% and 8.2% of average F1 score on monolingual and multilingual scenarios respectively. Notably, in multilingual scenario, our zero-shot framework even exceeds GPT-3.5 with few-shot learning by 24.3% in overall performance.
Neural Radiance Fields (NeRF) have garnered remarkable success in novel view synthesis. Nonetheless, the task of generating high-quality images for novel views persists as a critical challenge. While the existing efforts have exhibited commendable progress, capturing intricate details, enhancing textures, and achieving superior Peak Signal-to-Noise Ratio (PSNR) metrics warrant further focused attention and advancement. In this work, we propose NeRF-VPT, an innovative method for novel view synthesis to address these challenges. Our proposed NeRF-VPT employs a cascading view prompt tuning paradigm, wherein RGB information gained from preceding rendering outcomes serves as instructive visual prompts for subsequent rendering stages, with the aspiration that the prior knowledge embedded in the prompts can facilitate the gradual enhancement of rendered image quality. NeRF-VPT only requires sampling RGB data from previous stage renderings as priors at each training stage, without relying on extra guidance or complex techniques. Thus, our NeRF-VPT is plug-and-play and can be readily integrated into existing methods. By conducting comparative analyses of our NeRF-VPT against several NeRF-based approaches on demanding real-scene benchmarks, such as Realistic Synthetic 360, Real Forward-Facing, Replica dataset, and a user-captured dataset, we substantiate that our NeRF-VPT significantly elevates baseline performance and proficiently generates more high-quality novel view images than all the compared state-of-the-art methods. Furthermore, the cascading learning of NeRF-VPT introduces adaptability to scenarios with sparse inputs, resulting in a significant enhancement of accuracy for sparse-view novel view synthesis. The source code and dataset are available at \url{//github.com/Freedomcls/NeRF-VPT}.
Latent variable models are increasingly used in economics for high-dimensional categorical data like text and surveys. We demonstrate the effectiveness of Hamiltonian Monte Carlo (HMC) with parallelized automatic differentiation for analyzing such data in a computationally efficient and methodologically sound manner. Our new model, Supervised Topic Model with Covariates, shows that carefully modeling this type of data can have significant implications on conclusions compared to a simpler, frequently used, yet methodologically problematic, two-step approach. A simulation study and revisiting Bandiera et al. (2020)'s study of executive time use demonstrate these results. The approach accommodates thousands of parameters and doesn't require custom algorithms specific to each model, making it accessible for applied researchers
Recently, graph neural networks (GNNs) have been widely used for document classification. However, most existing methods are based on static word co-occurrence graphs without sentence-level information, which poses three challenges:(1) word ambiguity, (2) word synonymity, and (3) dynamic contextual dependency. To address these challenges, we propose a novel GNN-based sparse structure learning model for inductive document classification. Specifically, a document-level graph is initially generated by a disjoint union of sentence-level word co-occurrence graphs. Our model collects a set of trainable edges connecting disjoint words between sentences and employs structure learning to sparsely select edges with dynamic contextual dependencies. Graphs with sparse structures can jointly exploit local and global contextual information in documents through GNNs. For inductive learning, the refined document graph is further fed into a general readout function for graph-level classification and optimization in an end-to-end manner. Extensive experiments on several real-world datasets demonstrate that the proposed model outperforms most state-of-the-art results, and reveal the necessity to learn sparse structures for each document.
Link prediction is a very fundamental task on graphs. Inspired by traditional path-based methods, in this paper we propose a general and flexible representation learning framework based on paths for link prediction. Specifically, we define the representation of a pair of nodes as the generalized sum of all path representations, with each path representation as the generalized product of the edge representations in the path. Motivated by the Bellman-Ford algorithm for solving the shortest path problem, we show that the proposed path formulation can be efficiently solved by the generalized Bellman-Ford algorithm. To further improve the capacity of the path formulation, we propose the Neural Bellman-Ford Network (NBFNet), a general graph neural network framework that solves the path formulation with learned operators in the generalized Bellman-Ford algorithm. The NBFNet parameterizes the generalized Bellman-Ford algorithm with 3 neural components, namely INDICATOR, MESSAGE and AGGREGATE functions, which corresponds to the boundary condition, multiplication operator, and summation operator respectively. The NBFNet is very general, covers many traditional path-based methods, and can be applied to both homogeneous graphs and multi-relational graphs (e.g., knowledge graphs) in both transductive and inductive settings. Experiments on both homogeneous graphs and knowledge graphs show that the proposed NBFNet outperforms existing methods by a large margin in both transductive and inductive settings, achieving new state-of-the-art results.
Translational distance-based knowledge graph embedding has shown progressive improvements on the link prediction task, from TransE to the latest state-of-the-art RotatE. However, N-1, 1-N and N-N predictions still remain challenging. In this work, we propose a novel translational distance-based approach for knowledge graph link prediction. The proposed method includes two-folds, first we extend the RotatE from 2D complex domain to high dimension space with orthogonal transforms to model relations for better modeling capacity. Second, the graph context is explicitly modeled via two directed context representations. These context representations are used as part of the distance scoring function to measure the plausibility of the triples during training and inference. The proposed approach effectively improves prediction accuracy on the difficult N-1, 1-N and N-N cases for knowledge graph link prediction task. The experimental results show that it achieves better performance on two benchmark data sets compared to the baseline RotatE, especially on data set (FB15k-237) with many high in-degree connection nodes.
Answering questions that require reading texts in an image is challenging for current models. One key difficulty of this task is that rare, polysemous, and ambiguous words frequently appear in images, e.g., names of places, products, and sports teams. To overcome this difficulty, only resorting to pre-trained word embedding models is far from enough. A desired model should utilize the rich information in multiple modalities of the image to help understand the meaning of scene texts, e.g., the prominent text on a bottle is most likely to be the brand. Following this idea, we propose a novel VQA approach, Multi-Modal Graph Neural Network (MM-GNN). It first represents an image as a graph consisting of three sub-graphs, depicting visual, semantic, and numeric modalities respectively. Then, we introduce three aggregators which guide the message passing from one graph to another to utilize the contexts in various modalities, so as to refine the features of nodes. The updated nodes have better features for the downstream question answering module. Experimental evaluations show that our MM-GNN represents the scene texts better and obviously facilitates the performances on two VQA tasks that require reading scene texts.
Named entity recognition (NER) is the task to identify text spans that mention named entities, and to classify them into predefined categories such as person, location, organization etc. NER serves as the basis for a variety of natural language applications such as question answering, text summarization, and machine translation. Although early NER systems are successful in producing decent recognition accuracy, they often require much human effort in carefully designing rules or features. In recent years, deep learning, empowered by continuous real-valued vector representations and semantic composition through nonlinear processing, has been employed in NER systems, yielding stat-of-the-art performance. In this paper, we provide a comprehensive review on existing deep learning techniques for NER. We first introduce NER resources, including tagged NER corpora and off-the-shelf NER tools. Then, we systematically categorize existing works based on a taxonomy along three axes: distributed representations for input, context encoder, and tag decoder. Next, we survey the most representative methods for recent applied techniques of deep learning in new NER problem settings and applications. Finally, we present readers with the challenges faced by NER systems and outline future directions in this area.
In this paper, we proposed to apply meta learning approach for low-resource automatic speech recognition (ASR). We formulated ASR for different languages as different tasks, and meta-learned the initialization parameters from many pretraining languages to achieve fast adaptation on unseen target language, via recently proposed model-agnostic meta learning algorithm (MAML). We evaluated the proposed approach using six languages as pretraining tasks and four languages as target tasks. Preliminary results showed that the proposed method, MetaASR, significantly outperforms the state-of-the-art multitask pretraining approach on all target languages with different combinations of pretraining languages. In addition, since MAML's model-agnostic property, this paper also opens new research direction of applying meta learning to more speech-related applications.
Incompleteness is a common problem for existing knowledge graphs (KGs), and the completion of KG which aims to predict links between entities is challenging. Most existing KG completion methods only consider the direct relation between nodes and ignore the relation paths which contain useful information for link prediction. Recently, a few methods take relation paths into consideration but pay less attention to the order of relations in paths which is important for reasoning. In addition, these path-based models always ignore nonlinear contributions of path features for link prediction. To solve these problems, we propose a novel KG completion method named OPTransE. Instead of embedding both entities of a relation into the same latent space as in previous methods, we project the head entity and the tail entity of each relation into different spaces to guarantee the order of relations in the path. Meanwhile, we adopt a pooling strategy to extract nonlinear and complex features of different paths to further improve the performance of link prediction. Experimental results on two benchmark datasets show that the proposed model OPTransE performs better than state-of-the-art methods.
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