Biomedical triple extraction systems aim to automatically extract biomedical entities and relations between entities. While current unified information extraction models showcase state-of-the-art performance, they face challenges in understanding relationships between entities within intricate biomedical sentences. Furthermore, the absence of a high-quality biomedical triple extraction dataset impedes the progress in developing robust triple extraction systems. To tackle these challenges, we propose a novel retrieval-based framework for biomedical triple extraction, namely PeTailor, which explicitly retrieves the relevant document from our pre-built diverse chunk database using a novel tailored chunk scorer and integrates the retrieved information into the input of a Large Language Model (LLM) to generate the corresponding triple (head entity, relation, tail entity) for the input sentence. Additionally, we present GM-CIHT, an expert-annotated biomedical triple extraction dataset that covers a wider range of relation types. Experimental results show that our proposed PeTailor method achieves state-of-the-art performance on GM-CIHT and two standard biomedical triple extraction datasets
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Sequential learning problems are common in several fields of research and practical applications. Examples include dynamic pricing and assortment, design of auctions and incentives and permeate a large number of sequential treatment experiments. In this paper, we extend one of the most popular learning solutions, the $\epsilon_t$-greedy heuristics, to high-dimensional contexts considering a conservative directive. We do this by allocating part of the time the original rule uses to adopt completely new actions to a more focused search in a restrictive set of promising actions. The resulting rule might be useful for practical applications that still values surprises, although at a decreasing rate, while also has restrictions on the adoption of unusual actions. With high probability, we find reasonable bounds for the cumulative regret of a conservative high-dimensional decaying $\epsilon_t$-greedy rule. Also, we provide a lower bound for the cardinality of the set of viable actions that implies in an improved regret bound for the conservative version when compared to its non-conservative counterpart. Additionally, we show that end-users have sufficient flexibility when establishing how much safety they want, since it can be tuned without impacting theoretical properties. We illustrate our proposal both in a simulation exercise and using a real dataset.
ZKP systems have surged attention and held a fundamental role in contemporary cryptography. Zk-SNARK protocols dominate the ZKP usage, often implemented through arithmetic circuit programming paradigm. However, underconstrained or overconstrained circuits may lead to bugs. Underconstrained circuits refer to circuits that lack the necessary constraints, resulting in unexpected solutions in the circuit and causing the verifier to accept a bogus witness. Overconstrained circuits refer to circuits that are constrained excessively, resulting in the circuit lacking necessary solutions and causing the verifier to accept no witness, rendering the circuit meaningless. This paper introduces a novel approach for pinpointing two distinct types of bugs in ZKP circuits. The method involves encoding the arithmetic circuit constraints to polynomial equation systems and solving polynomial equation systems over a finite field by algebraic computation. The classification of verification results is refined, greatly enhancing the expressive power of the system. We proposed a tool, AC4, to represent the implementation of this method. Experiments demonstrate that AC4 represents a substantial 29% increase in the checked ratio compared to prior work. Within a solvable range, the checking time of AC4 has also exhibited noticeable improvement, demonstrating a magnitude increase compared to previous efforts.
Autism Spectrum Disorder (ASD) is a neurodevelopmental condition characterized by varied social cognitive challenges and repetitive behavioral patterns. Identifying reliable brain imaging-based biomarkers for ASD has been a persistent challenge due to the spectrum's diverse symptomatology. Existing baselines in the field have made significant strides in this direction, yet there remains room for improvement in both performance and interpretability. We propose \emph{HyperGALE}, which builds upon the hypergraph by incorporating learned hyperedges and gated attention mechanisms. This approach has led to substantial improvements in the model's ability to interpret complex brain graph data, offering deeper insights into ASD biomarker characterization. Evaluated on the extensive ABIDE II dataset, \emph{HyperGALE} not only improves interpretability but also demonstrates statistically significant enhancements in key performance metrics compared to both previous baselines and the foundational hypergraph model. The advancement \emph{HyperGALE} brings to ASD research highlights the potential of sophisticated graph-based techniques in neurodevelopmental studies. The source code and implementation instructions are available at GitHub://github.com/mehular0ra/HyperGALE.
In federated learning, data heterogeneity significantly impacts performance. A typical solution involves segregating these parameters into shared and personalized components, a concept also relevant in multi-task learning. Addressing this, we propose "Loop Improvement" (LI), a novel method enhancing this separation and feature extraction without necessitating a central server or data interchange among participants. Our experiments reveal LI's superiority in several aspects: In personalized federated learning environments, LI consistently outperforms the advanced FedALA algorithm in accuracy across diverse scenarios. Additionally, LI's feature extractor closely matches the performance achieved when aggregating data from all clients. In global model contexts, employing LI with stacked personalized layers and an additional network also yields comparable results to combined client data scenarios. Furthermore, LI's adaptability extends to multi-task learning, streamlining the extraction of common features across tasks and obviating the need for simultaneous training. This approach not only enhances individual task performance but also achieves accuracy levels on par with classic multi-task learning methods where all tasks are trained simultaneously. LI integrates a loop topology with layer-wise and end-to-end training, compatible with various neural network models. This paper also delves into the theoretical underpinnings of LI's effectiveness, offering insights into its potential applications. The code is on //github.com/axedge1983/LI
Deep learning methods are achieving ever-increasing performance on many artificial intelligence tasks. A major limitation of deep models is that they are not amenable to interpretability. This limitation can be circumvented by developing post hoc techniques to explain the predictions, giving rise to the area of explainability. Recently, explainability of deep models on images and texts has achieved significant progress. In the area of graph data, graph neural networks (GNNs) and their explainability are experiencing rapid developments. However, there is neither a unified treatment of GNN explainability methods, nor a standard benchmark and testbed for evaluations. In this survey, we provide a unified and taxonomic view of current GNN explainability methods. Our unified and taxonomic treatments of this subject shed lights on the commonalities and differences of existing methods and set the stage for further methodological developments. To facilitate evaluations, we generate a set of benchmark graph datasets specifically for GNN explainability. We summarize current datasets and metrics for evaluating GNN explainability. Altogether, this work provides a unified methodological treatment of GNN explainability and a standardized testbed for evaluations.
In multi-turn dialog, utterances do not always take the full form of sentences \cite{Carbonell1983DiscoursePA}, which naturally makes understanding the dialog context more difficult. However, it is essential to fully grasp the dialog context to generate a reasonable response. Hence, in this paper, we propose to improve the response generation performance by examining the model's ability to answer a reading comprehension question, where the question is focused on the omitted information in the dialog. Enlightened by the multi-task learning scheme, we propose a joint framework that unifies these two tasks, sharing the same encoder to extract the common and task-invariant features with different decoders to learn task-specific features. To better fusing information from the question and the dialog history in the encoding part, we propose to augment the Transformer architecture with a memory updater, which is designed to selectively store and update the history dialog information so as to support downstream tasks. For the experiment, we employ human annotators to write and examine a large-scale dialog reading comprehension dataset. Extensive experiments are conducted on this dataset, and the results show that the proposed model brings substantial improvements over several strong baselines on both tasks. In this way, we demonstrate that reasoning can indeed help better response generation and vice versa. We release our large-scale dataset for further research.
The problem of Multiple Object Tracking (MOT) consists in following the trajectory of different objects in a sequence, usually a video. In recent years, with the rise of Deep Learning, the algorithms that provide a solution to this problem have benefited from the representational power of deep models. This paper provides a comprehensive survey on works that employ Deep Learning models to solve the task of MOT on single-camera videos. Four main steps in MOT algorithms are identified, and an in-depth review of how Deep Learning was employed in each one of these stages is presented. A complete experimental comparison of the presented works on the three MOTChallenge datasets is also provided, identifying a number of similarities among the top-performing methods and presenting some possible future research directions.
We study the problem of learning representations of entities and relations in knowledge graphs for predicting missing links. The success of such a task heavily relies on the ability of modeling and inferring the patterns of (or between) the relations. In this paper, we present a new approach for knowledge graph embedding called RotatE, which is able to model and infer various relation patterns including: symmetry/antisymmetry, inversion, and composition. Specifically, the RotatE model defines each relation as a rotation from the source entity to the target entity in the complex vector space. In addition, we propose a novel self-adversarial negative sampling technique for efficiently and effectively training the RotatE model. Experimental results on multiple benchmark knowledge graphs show that the proposed RotatE model is not only scalable, but also able to infer and model various relation patterns and significantly outperform existing state-of-the-art models for link prediction.
Distant supervision can effectively label data for relation extraction, but suffers from the noise labeling problem. Recent works mainly perform soft bag-level noise reduction strategies to find the relatively better samples in a sentence bag, which is suboptimal compared with making a hard decision of false positive samples in sentence level. In this paper, we introduce an adversarial learning framework, which we named DSGAN, to learn a sentence-level true-positive generator. Inspired by Generative Adversarial Networks, we regard the positive samples generated by the generator as the negative samples to train the discriminator. The optimal generator is obtained until the discrimination ability of the discriminator has the greatest decline. We adopt the generator to filter distant supervision training dataset and redistribute the false positive instances into the negative set, in which way to provide a cleaned dataset for relation classification. The experimental results show that the proposed strategy significantly improves the performance of distant supervision relation extraction comparing to state-of-the-art systems.
Image segmentation is still an open problem especially when intensities of the interested objects are overlapped due to the presence of intensity inhomogeneity (also known as bias field). To segment images with intensity inhomogeneities, a bias correction embedded level set model is proposed where Inhomogeneities are Estimated by Orthogonal Primary Functions (IEOPF). In the proposed model, the smoothly varying bias is estimated by a linear combination of a given set of orthogonal primary functions. An inhomogeneous intensity clustering energy is then defined and membership functions of the clusters described by the level set function are introduced to rewrite the energy as a data term of the proposed model. Similar to popular level set methods, a regularization term and an arc length term are also included to regularize and smooth the level set function, respectively. The proposed model is then extended to multichannel and multiphase patterns to segment colourful images and images with multiple objects, respectively. It has been extensively tested on both synthetic and real images that are widely used in the literature and public BrainWeb and IBSR datasets. Experimental results and comparison with state-of-the-art methods demonstrate that advantages of the proposed model in terms of bias correction and segmentation accuracy.
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