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Many irregular domains such as social networks, financial transactions, neuron connections, and natural language structures are represented as graphs. In recent years, a variety of graph neural networks (GNNs) have been successfully applied for representation learning and prediction on such graphs. However, in many of the applications, the underlying graph changes over time and existing GNNs are inadequate for handling such dynamic graphs. In this paper we propose a novel technique for learning embeddings of dynamic graphs based on a tensor algebra framework. Our method extends the popular graph convolutional network (GCN) for learning representations of dynamic graphs using the recently proposed tensor M-product technique. Theoretical results that establish the connection between the proposed tensor approach and spectral convolution of tensors are developed. Numerical experiments on real datasets demonstrate the usefulness of the proposed method for an edge classification task on dynamic graphs.

Graph or network data is ubiquitous in the real world, including social networks, information networks, traffic networks, biological networks and various technical networks. The non-Euclidean nature of graph data poses the challenge for modeling and analyzing graph data. Recently, Graph Neural Network (GNNs) are proposed as a general and powerful framework to handle tasks on graph data, e.g., node embedding, link prediction and node classification. As a representative implementation of GNNs, Graph Attention Networks (GATs) are successfully applied in a variety of tasks on real datasets. However, GAT is designed to networks with only positive links and fails to handle signed networks which contain both positive and negative links. In this paper, we propose Signed Graph Attention Networks (SiGATs), generalizing GAT to signed networks. SiGAT incorporates graph motifs into GAT to capture two well-known theories in signed network research, i.e., balance theory and status theory. In SiGAT, motifs offer us the flexible structural pattern to aggregate and propagate messages on the signed network to generate node embeddings. We evaluate the proposed SiGAT method by applying it to the signed link prediction task. Experimental results on three real datasets demonstrate that SiGAT outperforms feature-based method, network embedding method and state-of-the-art GNN-based methods like signed graph convolutional network (SGCN).

Modeling generative process of growing graphs has wide applications in social networks and recommendation systems, where cold start problem leads to new nodes isolated from existing graph. Despite the emerging literature in learning graph representation and graph generation, most of them can not handle isolated new nodes without nontrivial modifications. The challenge arises due to the fact that learning to generate representations for nodes in observed graph relies heavily on topological features, whereas for new nodes only node attributes are available. Here we propose a unified generative graph convolutional network that learns node representations for all nodes adaptively in a generative model framework, by sampling graph generation sequences constructed from observed graph data. We optimize over a variational lower bound that consists of a graph reconstruction term and an adaptive Kullback-Leibler divergence regularization term. We demonstrate the superior performance of our approach on several benchmark citation network datasets.

Lots of learning tasks require dealing with graph data which contains rich relation information among elements. Modeling physics system, learning molecular fingerprints, predicting protein interface, and classifying diseases require that a model to learn from graph inputs. In other domains such as learning from non-structural data like texts and images, reasoning on extracted structures, like the dependency tree of sentences and the scene graph of images, is an important research topic which also needs graph reasoning models. Graph neural networks (GNNs) are connectionist models that capture the dependence of graphs via message passing between the nodes of graphs. Unlike standard neural networks, graph neural networks retain a state that can represent information from its neighborhood with an arbitrary depth. Although the primitive graph neural networks have been found difficult to train for a fixed point, recent advances in network architectures, optimization techniques, and parallel computation have enabled successful learning with them. In recent years, systems based on graph convolutional network (GCN) and gated graph neural network (GGNN) have demonstrated ground-breaking performance on many tasks mentioned above. In this survey, we provide a detailed review over existing graph neural network models, systematically categorize the applications, and propose four open problems for future research.

Network representation learning in low dimensional vector space has attracted considerable attention in both academic and industrial domains. Most real-world networks are dynamic with addition/deletion of nodes and edges. The existing graph embedding methods are designed for static networks and they cannot capture evolving patterns in a large dynamic network. In this paper, we propose a dynamic embedding method, dynnode2vec, based on the well-known graph embedding method node2vec. Node2vec is a random walk based embedding method for static networks. Applying static network embedding in dynamic settings has two crucial problems: 1) Generating random walks for every time step is time consuming 2) Embedding vector spaces in each timestamp are different. In order to tackle these challenges, dynnode2vec uses evolving random walks and initializes the current graph embedding with previous embedding vectors. We demonstrate the advantages of the proposed dynamic network embedding by conducting empirical evaluations on several large dynamic network datasets.

Network embedding has attracted considerable research attention recently. However, the existing methods are incapable of handling billion-scale networks, because they are computationally expensive and, at the same time, difficult to be accelerated by distributed computing schemes. To address these problems, we propose RandNE, a novel and simple billion-scale network embedding method. Specifically, we propose a Gaussian random projection approach to map the network into a low-dimensional embedding space while preserving the high-order proximities between nodes. To reduce the time complexity, we design an iterative projection procedure to avoid the explicit calculation of the high-order proximities. Theoretical analysis shows that our method is extremely efficient, and friendly to distributed computing schemes without any communication cost in the calculation. We demonstrate the efficacy of RandNE over state-of-the-art methods in network reconstruction and link prediction tasks on multiple datasets with different scales, ranging from thousands to billions of nodes and edges.

Adding attributes for nodes to network embedding helps to improve the ability of the learned joint representation to depict features from topology and attributes simultaneously. Recent research on the joint embedding has exhibited a promising performance on a variety of tasks by jointly embedding the two spaces. However, due to the indispensable requirement of globality based information, present approaches contain a flaw of in-scalability. Here we propose \emph{SANE}, a scalable attribute-aware network embedding algorithm with locality, to learn the joint representation from topology and attributes. By enforcing the alignment of a local linear relationship between each node and its K-nearest neighbors in topology and attribute space, the joint embedding representations are more informative comparing with a single representation from topology or attributes alone. And we argue that the locality in \emph{SANE} is the key to learning the joint representation at scale. By using several real-world networks from diverse domains, We demonstrate the efficacy of \emph{SANE} in performance and scalability aspect. Overall, for performance on label classification, SANE successfully reaches up to the highest F1-score on most datasets, and even closer to the baseline method that needs label information as extra inputs, compared with other state-of-the-art joint representation algorithms. What's more, \emph{SANE} has an up to 71.4\% performance gain compared with the single topology-based algorithm. For scalability, we have demonstrated the linearly time complexity of \emph{SANE}. In addition, we intuitively observe that when the network size scales to 100,000 nodes, the "learning joint embedding" step of \emph{SANE} only takes $\approx10$ seconds.

Methods that learn representations of nodes in a graph play a critical role in network analysis since they enable many downstream learning tasks. We propose Graph2Gauss - an approach that can efficiently learn versatile node embeddings on large scale (attributed) graphs that show strong performance on tasks such as link prediction and node classification. Unlike most approaches that represent nodes as point vectors in a low-dimensional continuous space, we embed each node as a Gaussian distribution, allowing us to capture uncertainty about the representation. Furthermore, we propose an unsupervised method that handles inductive learning scenarios and is applicable to different types of graphs: plain/attributed, directed/undirected. By leveraging both the network structure and the associated node attributes, we are able to generalize to unseen nodes without additional training. To learn the embeddings we adopt a personalized ranking formulation w.r.t. the node distances that exploits the natural ordering of the nodes imposed by the network structure. Experiments on real world networks demonstrate the high performance of our approach, outperforming state-of-the-art network embedding methods on several different tasks. Additionally, we demonstrate the benefits of modeling uncertainty - by analyzing it we can estimate neighborhood diversity and detect the intrinsic latent dimensionality of a graph.

Traditional methods for link prediction can be categorized into three main types: graph structure feature-based, latent feature-based, and explicit feature-based. Graph structure feature methods leverage some handcrafted node proximity scores, e.g., common neighbors, to estimate the likelihood of links. Latent feature methods rely on factorizing networks' matrix representations to learn an embedding for each node. Explicit feature methods train a machine learning model on two nodes' explicit attributes. Each of the three types of methods has its unique merits. In this paper, we propose SEAL (learning from Subgraphs, Embeddings, and Attributes for Link prediction), a new framework for link prediction which combines the power of all the three types into a single graph neural network (GNN). GNN is a new type of neural network which directly accepts graphs as input and outputs their labels. In SEAL, the input to the GNN is a local subgraph around each target link. We prove theoretically that our local subgraphs also reserve a great deal of high-order graph structure features related to link existence. Another key feature is that our GNN can naturally incorporate latent features and explicit features. It is achieved by concatenating node embeddings (latent features) and node attributes (explicit features) in the node information matrix for each subgraph, thus combining the three types of features to enhance GNN learning. Through extensive experiments, SEAL shows unprecedentedly strong performance against a wide range of baseline methods, including various link prediction heuristics and network embedding methods.