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Fully understanding a complex high-resolution satellite or aerial imagery scene often requires spatial reasoning over a broad relevant context. The human object recognition system is able to understand object in a scene over a long-range relevant context. For example, if a human observes an aerial scene that shows sections of road broken up by tree canopy, then they will be unlikely to conclude that the road has actually been broken up into disjoint pieces by trees and instead think that the canopy of nearby trees is occluding the road. However, there is limited research being conducted to understand long-range context understanding of modern machine learning models. In this work we propose a road segmentation benchmark dataset, Chesapeake Roads Spatial Context (RSC), for evaluating the spatial long-range context understanding of geospatial machine learning models and show how commonly used semantic segmentation models can fail at this task. For example, we show that a U-Net trained to segment roads from background in aerial imagery achieves an 84% recall on unoccluded roads, but just 63.5% recall on roads covered by tree canopy despite being trained to model both the same way. We further analyze how the performance of models changes as the relevant context for a decision (unoccluded roads in our case) varies in distance. We release the code to reproduce our experiments and dataset of imagery and masks to encourage future research in this direction -- //github.com/isaaccorley/ChesapeakeRSC.

Advances in survival analysis have facilitated unprecedented flexibility in data modeling, yet there remains a lack of tools for graphically illustrating the influence of continuous covariates on predicted survival outcomes. We propose the utilization of a colored contour plot to depict the predicted survival probabilities over time, and provide a Shiny app and R package as implementations of this tool. Our approach is capable of supporting conventional models, including the Cox and Fine-Gray models. However, its capability shines when coupled with cutting-edge machine learning models such as random survival forests and deep neural networks.

User interaction is one of the most effective ways to improve the ontology alignment quality. However, this approach faces the challenge of how users can participate effectively in the matching process. To solve this challenge. In this paper, an interactive ontology alignment approach using compact differential evolution algorithm with adaptive parameter control (IOACDE) is proposed. In this method, the ontology alignment process is modeled as an interactive optimization problem and users are allowed to intervene in matching in two ways. One is that the mapping suggestions generated by IOACDE as a complete candidate alignment is evaluated by user during optimization process. The other is that the user ameliorates the alignment results by evaluating single mapping after the automatic matching process. To demonstrate the effectiveness of the proposed algorithm, the neural embedding model and K nearest neighbor (KNN) is employed to simulate user for the ontologies of the real world. The experimental results show that the proposed interactive approach can improve the alignment quality compared to the non-interactive. Compared with the state-of-the-art methods from OAEI, the results show that the proposed algorithm has a better performance under the same error rate.

There is currently a focus on statistical methods which can use historical trial information to help accelerate the discovery, development and delivery of medicine. Bayesian methods can be constructed so that the borrowing is "dynamic" in the sense that the similarity of the data helps to determine how much information is used. In the time to event setting with one historical data set, a popular model for a range of baseline hazards is the piecewise exponential model where the time points are fixed and a borrowing structure is imposed on the model. Although convenient for implementation this approach effects the borrowing capability of the model. We propose a Bayesian model which allows the time points to vary and a dependency to be placed between the baseline hazards. This serves to smooth the posterior baseline hazard improving both model estimation and borrowing characteristics. We explore a variety of prior structures for the borrowing within our proposed model and assess their performance against established approaches. We demonstrate that this leads to improved type I error in the presence of prior data conflict and increased power. We have developed accompanying software which is freely available and enables easy implementation of the approach.

Physics-informed neural networks (PINNs) have shown remarkable prospects in the solving the forward and inverse problems involving partial differential equations (PDEs). The method embeds PDEs into the neural network by calculating PDE loss at a series of collocation points, providing advantages such as meshfree and more convenient adaptive sampling. However, when solving PDEs using nonuniform collocation points, PINNs still face challenge regarding inefficient convergence of PDE residuals or even failure. In this work, we first analyze the ill-conditioning of the PDE loss in PINNs under nonuniform collocation points. To address the issue, we define volume-weighted residual and propose volume-weighted physics-informed neural networks (VW-PINNs). Through weighting the PDE residuals by the volume that the collocation points occupy within the computational domain, we embed explicitly the spatial distribution characteristics of collocation points in the residual evaluation. The fast and sufficient convergence of the PDE residuals for the problems involving nonuniform collocation points is guaranteed. Considering the meshfree characteristics of VW-PINNs, we also develop a volume approximation algorithm based on kernel density estimation to calculate the volume of the collocation points. We verify the universality of VW-PINNs by solving the forward problems involving flow over a circular cylinder and flow over the NACA0012 airfoil under different inflow conditions, where conventional PINNs fail; By solving the Burgers' equation, we verify that VW-PINNs can enhance the efficiency of existing the adaptive sampling method in solving the forward problem by 3 times, and can reduce the relative error of conventional PINNs in solving the inverse problem by more than one order of magnitude.

Retinal image registration is of utmost importance due to its wide applications in medical practice. In this context, we propose ConKeD, a novel deep learning approach to learn descriptors for retinal image registration. In contrast to current registration methods, our approach employs a novel multi-positive multi-negative contrastive learning strategy that enables the utilization of additional information from the available training samples. This makes it possible to learn high quality descriptors from limited training data. To train and evaluate ConKeD, we combine these descriptors with domain-specific keypoints, particularly blood vessel bifurcations and crossovers, that are detected using a deep neural network. Our experimental results demonstrate the benefits of the novel multi-positive multi-negative strategy, as it outperforms the widely used triplet loss technique (single-positive and single-negative) as well as the single-positive multi-negative alternative. Additionally, the combination of ConKeD with the domain-specific keypoints produces comparable results to the state-of-the-art methods for retinal image registration, while offering important advantages such as avoiding pre-processing, utilizing fewer training samples, and requiring fewer detected keypoints, among others. Therefore, ConKeD shows a promising potential towards facilitating the development and application of deep learning-based methods for retinal image registration.

As interest in deep neural networks (DNNs) for image reconstruction tasks grows, their reliability has been called into question (Antun et al., 2020; Gottschling et al., 2020). However, recent work has shown that, compared to total variation (TV) minimization, when appropriately regularized, DNNs show similar robustness to adversarial noise in terms of $\ell^2$-reconstruction error (Genzel et al., 2022). We consider a different notion of robustness, using the $\ell^\infty$-norm, and argue that localized reconstruction artifacts are a more relevant defect than the $\ell^2$-error. We create adversarial perturbations to undersampled magnetic resonance imaging measurements (in the frequency domain) which induce severe localized artifacts in the TV-regularized reconstruction. Notably, the same attack method is not as effective against DNN based reconstruction. Finally, we show that this phenomenon is inherent to reconstruction methods for which exact recovery can be guaranteed, as with compressed sensing reconstructions with $\ell^1$- or TV-minimization.

In this work, we study diversity-aware clustering problems where the data points are associated with multiple attributes resulting in intersecting groups. A clustering solution need to ensure that a minimum number of cluster centers are chosen from each group while simultaneously minimizing the clustering objective, which can be either $k$-median, $k$-means or $k$-supplier. We present parameterized approximation algorithms with approximation ratios $1+ \frac{2}{e}$, $1+\frac{8}{e}$ and $3$ for diversity-aware $k$-median, diversity-aware $k$-means and diversity-aware $k$-supplier, respectively. The approximation ratios are tight assuming Gap-ETH and FPT $\neq$ W[2]. For fair $k$-median and fair $k$-means with disjoint faicility groups, we present parameterized approximation algorithm with approximation ratios $1+\frac{2}{e}$ and $1+\frac{8}{e}$, respectively. For fair $k$-supplier with disjoint facility groups, we present a polynomial-time approximation algorithm with factor $3$, improving the previous best known approximation ratio of factor $5$.

Graph representation learning for hypergraphs can be used to extract patterns among higher-order interactions that are critically important in many real world problems. Current approaches designed for hypergraphs, however, are unable to handle different types of hypergraphs and are typically not generic for various learning tasks. Indeed, models that can predict variable-sized heterogeneous hyperedges have not been available. Here we develop a new self-attention based graph neural network called Hyper-SAGNN applicable to homogeneous and heterogeneous hypergraphs with variable hyperedge sizes. We perform extensive evaluations on multiple datasets, including four benchmark network datasets and two single-cell Hi-C datasets in genomics. We demonstrate that Hyper-SAGNN significantly outperforms the state-of-the-art methods on traditional tasks while also achieving great performance on a new task called outsider identification. Hyper-SAGNN will be useful for graph representation learning to uncover complex higher-order interactions in different applications.

Nowadays, the Convolutional Neural Networks (CNNs) have achieved impressive performance on many computer vision related tasks, such as object detection, image recognition, image retrieval, etc. These achievements benefit from the CNNs outstanding capability to learn the input features with deep layers of neuron structures and iterative training process. However, these learned features are hard to identify and interpret from a human vision perspective, causing a lack of understanding of the CNNs internal working mechanism. To improve the CNN interpretability, the CNN visualization is well utilized as a qualitative analysis method, which translates the internal features into visually perceptible patterns. And many CNN visualization works have been proposed in the literature to interpret the CNN in perspectives of network structure, operation, and semantic concept. In this paper, we expect to provide a comprehensive survey of several representative CNN visualization methods, including Activation Maximization, Network Inversion, Deconvolutional Neural Networks (DeconvNet), and Network Dissection based visualization. These methods are presented in terms of motivations, algorithms, and experiment results. Based on these visualization methods, we also discuss their practical applications to demonstrate the significance of the CNN interpretability in areas of network design, optimization, security enhancement, etc.