Continuum models for ion transport through polyamide nanopores require solving partial differential equations (PDEs) through complex pore geometries. Resolving spatiotemporal features at this length and time-scale can make solving these equations computationally intractable. In addition, mechanistic models frequently require functional relationships between ion interaction parameters under nano-confinement, which are often too challenging to measure experimentally or know a priori. In this work, we develop the first physics-informed deep learning model to learn ion transport behaviour across polyamide nanopores. The proposed architecture leverages neural differential equations in conjunction with classical closure models as inductive biases directly encoded into the neural framework. The neural differential equations are pre-trained on simulated data from continuum models and fine-tuned on independent experimental data to learn ion rejection behaviour. Gaussian noise augmentations from experimental uncertainty estimates are also introduced into the measured data to improve model generalization. Our approach is compared to other physics-informed deep learning models and shows strong agreement with experimental measurements across all studied datasets.
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A stochastic-gradient-based interior-point algorithm for minimizing a continuously differentiable objective function (that may be nonconvex) subject to bound constraints is presented, analyzed, and demonstrated through experimental results. The algorithm is unique from other interior-point methods for solving smooth (nonconvex) optimization problems since the search directions are computed using stochastic gradient estimates. It is also unique in its use of inner neighborhoods of the feasible region -- defined by a positive and vanishing neighborhood-parameter sequence -- in which the iterates are forced to remain. It is shown that with a careful balance between the barrier, step-size, and neighborhood sequences, the proposed algorithm satisfies convergence guarantees in both deterministic and stochastic settings. The results of numerical experiments show that in both settings the algorithm can outperform a projected-(stochastic)-gradient method.
Data-driven learning of partial differential equations' solution operators has recently emerged as a promising paradigm for approximating the underlying solutions. The solution operators are usually parameterized by deep learning models that are built upon problem-specific inductive biases. An example is a convolutional or a graph neural network that exploits the local grid structure where functions' values are sampled. The attention mechanism, on the other hand, provides a flexible way to implicitly exploit the patterns within inputs, and furthermore, relationship between arbitrary query locations and inputs. In this work, we present an attention-based framework for data-driven operator learning, which we term Operator Transformer (OFormer). Our framework is built upon self-attention, cross-attention, and a set of point-wise multilayer perceptrons (MLPs), and thus it makes few assumptions on the sampling pattern of the input function or query locations. We show that the proposed framework is competitive on standard benchmark problems and can flexibly be adapted to randomly sampled input.
Inverse reinforcement learning (IRL) methods assume that the expert data is generated by an agent optimizing some reward function. However, in many settings, the agent may optimize a reward function subject to some constraints, where the constraints induce behaviors that may be otherwise difficult to express with just a reward function. We consider the setting where the reward function is given, and the constraints are unknown, and propose a method that is able to recover these constraints satisfactorily from the expert data. While previous work has focused on recovering hard constraints, our method can recover cumulative soft constraints that the agent satisfies on average per episode. In IRL fashion, our method solves this problem by adjusting the constraint function iteratively through a constrained optimization procedure, until the agent behavior matches the expert behavior. We demonstrate our approach on synthetic environments, robotics environments and real world highway driving scenarios.
Pseudo-Hamiltonian neural networks (PHNN) were recently introduced for learning dynamical systems that can be modelled by ordinary differential equations. In this paper, we extend the method to partial differential equations. The resulting model is comprised of up to three neural networks, modelling terms representing conservation, dissipation and external forces, and discrete convolution operators that can either be learned or be prior knowledge. We demonstrate numerically the superior performance of PHNN compared to a baseline model that models the full dynamics by a single neural network. Moreover, since the PHNN model consists of three parts with different physical interpretations, these can be studied separately to gain insight into the system, and the learned model is applicable also if external forces are removed or changed.
Experimental data is often comprised of variables measured independently, at different sampling rates (non-uniform ${\Delta}$t between successive measurements); and at a specific time point only a subset of all variables may be sampled. Approaches to identifying dynamical systems from such data typically use interpolation, imputation or subsampling to reorganize or modify the training data $\textit{prior}$ to learning. Partial physical knowledge may also be available $\textit{a priori}$ (accurately or approximately), and data-driven techniques can complement this knowledge. Here we exploit neural network architectures based on numerical integration methods and $\textit{a priori}$ physical knowledge to identify the right-hand side of the underlying governing differential equations. Iterates of such neural-network models allow for learning from data sampled at arbitrary time points $\textit{without}$ data modification. Importantly, we integrate the network with available partial physical knowledge in "physics informed gray-boxes"; this enables learning unknown kinetic rates or microbial growth functions while simultaneously estimating experimental parameters.
This paper considers the hyperparameter optimization problem of mathematical techniques that arise in the numerical solution of differential and integral equations. The well-known approaches grid and random search, in a parallel algorithm manner, are developed to find the optimal set of hyperparameters. Employing rational Jacobi functions, we ran these algorithms on two nonlinear benchmark differential equations on the semi-infinite domain. The configurations contain different rational mappings along with their length scale parameter and the Jacobi functions parameters. These trials are configured on the collocation Least-Squares Support Vector Regression (CLS-SVR), a novel numerical simulation approach based on spectral methods. In addition, we have addressed the sensitivity of these hyperparameters on the numerical stability and convergence of the CLS-SVR model. The experiments show that this technique can effectively improve state-of-the-art results.
Recently, graph neural networks have been gaining a lot of attention to simulate dynamical systems due to their inductive nature leading to zero-shot generalizability. Similarly, physics-informed inductive biases in deep-learning frameworks have been shown to give superior performance in learning the dynamics of physical systems. There is a growing volume of literature that attempts to combine these two approaches. Here, we evaluate the performance of thirteen different graph neural networks, namely, Hamiltonian and Lagrangian graph neural networks, graph neural ODE, and their variants with explicit constraints and different architectures. We briefly explain the theoretical formulation highlighting the similarities and differences in the inductive biases and graph architecture of these systems. We evaluate these models on spring, pendulum, gravitational, and 3D deformable solid systems to compare the performance in terms of rollout error, conserved quantities such as energy and momentum, and generalizability to unseen system sizes. Our study demonstrates that GNNs with additional inductive biases, such as explicit constraints and decoupling of kinetic and potential energies, exhibit significantly enhanced performance. Further, all the physics-informed GNNs exhibit zero-shot generalizability to system sizes an order of magnitude larger than the training system, thus providing a promising route to simulate large-scale realistic systems.
The conjoining of dynamical systems and deep learning has become a topic of great interest. In particular, neural differential equations (NDEs) demonstrate that neural networks and differential equation are two sides of the same coin. Traditional parameterised differential equations are a special case. Many popular neural network architectures, such as residual networks and recurrent networks, are discretisations. NDEs are suitable for tackling generative problems, dynamical systems, and time series (particularly in physics, finance, ...) and are thus of interest to both modern machine learning and traditional mathematical modelling. NDEs offer high-capacity function approximation, strong priors on model space, the ability to handle irregular data, memory efficiency, and a wealth of available theory on both sides. This doctoral thesis provides an in-depth survey of the field. Topics include: neural ordinary differential equations (e.g. for hybrid neural/mechanistic modelling of physical systems); neural controlled differential equations (e.g. for learning functions of irregular time series); and neural stochastic differential equations (e.g. to produce generative models capable of representing complex stochastic dynamics, or sampling from complex high-dimensional distributions). Further topics include: numerical methods for NDEs (e.g. reversible differential equations solvers, backpropagation through differential equations, Brownian reconstruction); symbolic regression for dynamical systems (e.g. via regularised evolution); and deep implicit models (e.g. deep equilibrium models, differentiable optimisation). We anticipate this thesis will be of interest to anyone interested in the marriage of deep learning with dynamical systems, and hope it will provide a useful reference for the current state of the art.
Graph Neural Networks (GNNs) have recently become increasingly popular due to their ability to learn complex systems of relations or interactions arising in a broad spectrum of problems ranging from biology and particle physics to social networks and recommendation systems. Despite the plethora of different models for deep learning on graphs, few approaches have been proposed thus far for dealing with graphs that present some sort of dynamic nature (e.g. evolving features or connectivity over time). In this paper, we present Temporal Graph Networks (TGNs), a generic, efficient framework for deep learning on dynamic graphs represented as sequences of timed events. Thanks to a novel combination of memory modules and graph-based operators, TGNs are able to significantly outperform previous approaches being at the same time more computationally efficient. We furthermore show that several previous models for learning on dynamic graphs can be cast as specific instances of our framework. We perform a detailed ablation study of different components of our framework and devise the best configuration that achieves state-of-the-art performance on several transductive and inductive prediction tasks for dynamic graphs.
This paper addresses the difficulty of forecasting multiple financial time series (TS) conjointly using deep neural networks (DNN). We investigate whether DNN-based models could forecast these TS more efficiently by learning their representation directly. To this end, we make use of the dynamic factor graph (DFG) from that we enhance by proposing a novel variable-length attention-based mechanism to render it memory-augmented. Using this mechanism, we propose an unsupervised DNN architecture for multivariate TS forecasting that allows to learn and take advantage of the relationships between these TS. We test our model on two datasets covering 19 years of investment funds activities. Our experimental results show that our proposed approach outperforms significantly typical DNN-based and statistical models at forecasting their 21-day price trajectory.
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