Understanding the neural basis of behavior is a fundamental goal in neuroscience. Current research in large-scale neuro-behavioral data analysis often relies on decoding models, which quantify behavioral information in neural data but lack details on behavior encoding. This raises an intriguing scientific question: ``how can we enable in-depth exploration of neural representations in behavioral tasks, revealing interpretable neural dynamics associated with behaviors''. However, addressing this issue is challenging due to the varied behavioral encoding across different brain regions and mixed selectivity at the population level. To tackle this limitation, our approach, named ``BeNeDiff'', first identifies a fine-grained and disentangled neural subspace using a behavior-informed latent variable model. It then employs state-of-the-art generative diffusion models to synthesize behavior videos that interpret the neural dynamics of each latent factor. We validate the method on multi-session datasets containing widefield calcium imaging recordings across the dorsal cortex. Through guiding the diffusion model to activate individual latent factors, we verify that the neural dynamics of latent factors in the disentangled neural subspace provide interpretable quantifications of the behaviors of interest. At the same time, the neural subspace in BeNeDiff demonstrates high disentanglement and neural reconstruction quality.
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ACM/IEEE第23屆模型驅動工程語言和系統國際會議，是模型驅動軟件和系統工程的首要會議系列，由ACM-SIGSOFT和IEEE-TCSE支持組織。自1998年以來，模型涵蓋了建模的各個方面，從語言和方法到工具和應用程序。模特的參加者來自不同的背景，包括研究人員、學者、工程師和工業專業人士。MODELS 2019是一個論壇，參與者可以圍繞建模和模型驅動的軟件和系統交流前沿研究成果和創新實踐經驗。今年的版本將為建模社區提供進一步推進建模基礎的機會，并在網絡物理系統、嵌入式系統、社會技術系統、云計算、大數據、機器學習、安全、開源等新興領域提出建模的創新應用以及可持續性。
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Computed tomography from a low radiation dose (LDCT) is challenging due to high noise in the projection data. Popular approaches for LDCT image reconstruction are two-stage methods, typically consisting of the filtered backprojection (FBP) algorithm followed by a neural network for LDCT image enhancement. Two-stage methods are attractive for their simplicity and potential for computational efficiency, typically requiring only a single FBP and a neural network forward pass for inference. However, the best reconstruction quality is currently achieved by unrolled iterative methods (Learned Primal-Dual and ItNet), which are more complex and thus have a higher computational cost for training and inference. We propose a method combining the simplicity and efficiency of two-stage methods with state-of-the-art reconstruction quality. Our strategy utilizes a neural network pretrained for Gaussian noise removal from natural grayscale images, fine-tuned for LDCT image enhancement. We call this method FBP-DTSGD (Domain and Task Shifted Gaussian Denoisers) as the fine-tuning is a task shift from Gaussian denoising to enhancing LDCT images and a domain shift from natural grayscale to LDCT images. An ablation study with three different pretrained Gaussian denoisers indicates that the performance of FBP-DTSGD does not depend on a specific denoising architecture, suggesting future advancements in Gaussian denoising could benefit the method. The study also shows that pretraining on natural images enhances LDCT reconstruction quality, especially with limited training data. Notably, pretraining involves no additional cost, as existing pretrained models are used. The proposed method currently holds the top mean position in the LoDoPaB-CT challenge.
A multichannel extension to the RVQGAN neural coding method is proposed, and realized for data-driven compression of third-order Ambisonics audio. The input- and output layers of the generator and discriminator models are modified to accept multiple (16) channels without increasing the model bitrate. We also propose a loss function for accounting for spatial perception in immersive reproduction, and transfer learning from single-channel models. Listening test results with 7.1.4 immersive playback show that the proposed extension is suitable for coding scene-based, 16-channel Ambisonics content with good quality at 16 kbps when trained and tested on the EigenScape database. The model has potential applications for learning other types of content and multichannel formats.
We consider the computational efficiency of Monte Carlo (MC) and Multilevel Monte Carlo (MLMC) methods applied to partial differential equations with random coefficients. These arise, for example, in groundwater flow modelling, where a commonly used model for the unknown parameter is a random field. We make use of the circulant embedding procedure for sampling from the aforementioned coefficient. To improve the computational complexity of the MLMC estimator in the case of highly oscillatory random fields, we devise and implement a smoothing technique integrated into the circulant embedding method. This allows to choose the coarsest mesh on the first level of MLMC independently of the correlation length of the covariance function of the random field, leading to considerable savings in computational cost. We illustrate this with numerical experiments, where we see a saving of factor 5-10 in computational cost for accuracies of practical interest.
We introduce a novel, data-driven approach for reconstructing temporally coherent 3D motion from unstructured and potentially partial observations of non-rigidly deforming shapes. Our goal is to achieve high-fidelity motion reconstructions for shapes that undergo near-isometric deformations, such as humans wearing loose clothing. The key novelty of our work lies in its ability to combine implicit shape representations with explicit mesh-based deformation models, enabling detailed and temporally coherent motion reconstructions without relying on parametric shape models or decoupling shape and motion. Each frame is represented as a neural field decoded from a feature space where observations over time are fused, hence preserving geometric details present in the input data. Temporal coherence is enforced with a near-isometric deformation constraint between adjacent frames that applies to the underlying surface in the neural field. Our method outperforms state-of-the-art approaches, as demonstrated by its application to human and animal motion sequences reconstructed from monocular depth videos.
We consider estimation and inference for a regression coefficient in panels with interactive fixed effects (i.e., with a factor structure). We demonstrate that existing estimators and confidence intervals (CIs) can be heavily biased and size-distorted when some of the factors are weak. We propose estimators with improved rates of convergence and bias-aware CIs that remain valid uniformly, regardless of factor strength. Our approach applies the theory of minimax linear estimation to form a debiased estimate, using a nuclear norm bound on the error of an initial estimate of the interactive fixed effects. Our resulting bias-aware CIs take into account the remaining bias caused by weak factors. Monte Carlo experiments show substantial improvements over conventional methods when factors are weak, with minimal costs to estimation accuracy when factors are strong.
Maximal clique enumeration (MCE) is crucial for tasks like community detection and biological network analysis. Existing algorithms typically adopt the branch-and-bound framework with the vertex-oriented Bron-Kerbosch (BK) branching strategy, which forms the sub-branches by expanding the partial clique with a vertex. In this paper, we present a novel approach called HBBMC, a hybrid framework combining vertex-oriented BK branching and edge-oriented BK branching, where the latter adopts a branch-and-bound framework which forms the sub-branches by expanding the partial clique with an edge. This hybrid strategy enables more effective pruning and helps achieve a worst-case time complexity better than the best known one under a condition that holds for the majority of real-world graphs. To further enhance efficiency, we introduce an early termination technique, which leverages the topological information of the graphs and constructs the maximal cliques directly without branching. Our early termination technique is applicable to all branch-and-bound frameworks. Extensive experiments demonstrate the superior performance of our techniques.
We initiate the focused study of constant-cost randomized communication, with emphasis on its connection to graph representations. We observe that constant-cost randomized communication problems are equivalent to hereditary (i.e. closed under taking induced subgraphs) graph classes which admit constant-size adjacency sketches and probabilistic universal graphs (PUGs), which are randomized versions of the well-studied adjacency labeling schemes and induced-universal graphs. This gives a new perspective on long-standing questions about the existence of these objects, including new methods of constructing adjacency labeling schemes. We ask three main questions about constant-cost communication, or equivalently, constant-size PUGs: (1) Are there any natural, non-trivial problems aside from Equality and k-Hamming Distance which have constant-cost communication? We provide a number of new examples, including deciding whether two vertices have path-distance at most k in a planar graph, and showing that constant-size PUGs are preserved by the Cartesian product operation. (2) What structures of a problem explain the existence or non-existence of a constant-cost protocol? We show that in many cases a Greater-Than subproblem is such a structure. (3) Is the Equality problem complete for constant-cost randomized communication? We show that it is not: there are constant-cost problems which do not reduce to Equality.
Graph Neural Networks (GNNs) have received considerable attention on graph-structured data learning for a wide variety of tasks. The well-designed propagation mechanism which has been demonstrated effective is the most fundamental part of GNNs. Although most of GNNs basically follow a message passing manner, litter effort has been made to discover and analyze their essential relations. In this paper, we establish a surprising connection between different propagation mechanisms with a unified optimization problem, showing that despite the proliferation of various GNNs, in fact, their proposed propagation mechanisms are the optimal solution optimizing a feature fitting function over a wide class of graph kernels with a graph regularization term. Our proposed unified optimization framework, summarizing the commonalities between several of the most representative GNNs, not only provides a macroscopic view on surveying the relations between different GNNs, but also further opens up new opportunities for flexibly designing new GNNs. With the proposed framework, we discover that existing works usually utilize naive graph convolutional kernels for feature fitting function, and we further develop two novel objective functions considering adjustable graph kernels showing low-pass or high-pass filtering capabilities respectively. Moreover, we provide the convergence proofs and expressive power comparisons for the proposed models. Extensive experiments on benchmark datasets clearly show that the proposed GNNs not only outperform the state-of-the-art methods but also have good ability to alleviate over-smoothing, and further verify the feasibility for designing GNNs with our unified optimization framework.
Pre-trained deep neural network language models such as ELMo, GPT, BERT and XLNet have recently achieved state-of-the-art performance on a variety of language understanding tasks. However, their size makes them impractical for a number of scenarios, especially on mobile and edge devices. In particular, the input word embedding matrix accounts for a significant proportion of the model's memory footprint, due to the large input vocabulary and embedding dimensions. Knowledge distillation techniques have had success at compressing large neural network models, but they are ineffective at yielding student models with vocabularies different from the original teacher models. We introduce a novel knowledge distillation technique for training a student model with a significantly smaller vocabulary as well as lower embedding and hidden state dimensions. Specifically, we employ a dual-training mechanism that trains the teacher and student models simultaneously to obtain optimal word embeddings for the student vocabulary. We combine this approach with learning shared projection matrices that transfer layer-wise knowledge from the teacher model to the student model. Our method is able to compress the BERT_BASE model by more than 60x, with only a minor drop in downstream task metrics, resulting in a language model with a footprint of under 7MB. Experimental results also demonstrate higher compression efficiency and accuracy when compared with other state-of-the-art compression techniques.
Multi-relation Question Answering is a challenging task, due to the requirement of elaborated analysis on questions and reasoning over multiple fact triples in knowledge base. In this paper, we present a novel model called Interpretable Reasoning Network that employs an interpretable, hop-by-hop reasoning process for question answering. The model dynamically decides which part of an input question should be analyzed at each hop; predicts a relation that corresponds to the current parsed results; utilizes the predicted relation to update the question representation and the state of the reasoning process; and then drives the next-hop reasoning. Experiments show that our model yields state-of-the-art results on two datasets. More interestingly, the model can offer traceable and observable intermediate predictions for reasoning analysis and failure diagnosis, thereby allowing manual manipulation in predicting the final answer.
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