The scarcity of well-annotated medical datasets requires leveraging transfer learning from broader datasets like ImageNet or pre-trained models like CLIP. Model soups averages multiple fine-tuned models aiming to improve performance on In-Domain (ID) tasks and enhance robustness against Out-of-Distribution (OOD) datasets. However, applying these methods to the medical imaging domain faces challenges and results in suboptimal performance. This is primarily due to differences in error surface characteristics that stem from data complexities such as heterogeneity, domain shift, class imbalance, and distributional shifts between training and testing phases. To address this issue, we propose a hierarchical merging approach that involves local and global aggregation of models at various levels based on models' hyperparameter configurations. Furthermore, to alleviate the need for training a large number of models in the hyperparameter search, we introduce a computationally efficient method using a cyclical learning rate scheduler to produce multiple models for aggregation in the weight space. Our method demonstrates significant improvements over the model souping approach across multiple datasets (around 6% gain in HAM10000 and CheXpert datasets) while maintaining low computational costs for model generation and selection. Moreover, we achieve better results on OOD datasets than model soups. The code is available at //github.com/BioMedIA-MBZUAI/FissionFusion.
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ACM/IEEE第23屆模型驅動工程語言和系統國際會議，是模型驅動軟件和系統工程的首要會議系列，由ACM-SIGSOFT和IEEE-TCSE支持組織。自1998年以來，模型涵蓋了建模的各個方面，從語言和方法到工具和應用程序。模特的參加者來自不同的背景，包括研究人員、學者、工程師和工業專業人士。MODELS 2019是一個論壇，參與者可以圍繞建模和模型驅動的軟件和系統交流前沿研究成果和創新實踐經驗。今年的版本將為建模社區提供進一步推進建模基礎的機會，并在網絡物理系統、嵌入式系統、社會技術系統、云計算、大數據、機器學習、安全、開源等新興領域提出建模的創新應用以及可持續性。
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Performer
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Recent works in dataset distillation seek to minimize training expenses by generating a condensed synthetic dataset that encapsulates the information present in a larger real dataset. These approaches ultimately aim to attain test accuracy levels akin to those achieved by models trained on the entirety of the original dataset. Previous studies in feature and distribution matching have achieved significant results without incurring the costs of bi-level optimization in the distillation process. Despite their convincing efficiency, many of these methods suffer from marginal downstream performance improvements, limited distillation of contextual information, and subpar cross-architecture generalization. To address these challenges in dataset distillation, we propose the ATtentiOn Mixer (ATOM) module to efficiently distill large datasets using a mixture of channel and spatial-wise attention in the feature matching process. Spatial-wise attention helps guide the learning process based on consistent localization of classes in their respective images, allowing for distillation from a broader receptive field. Meanwhile, channel-wise attention captures the contextual information associated with the class itself, thus making the synthetic image more informative for training. By integrating both types of attention, our ATOM module demonstrates superior performance across various computer vision datasets, including CIFAR10/100 and TinyImagenet. Notably, our method significantly improves performance in scenarios with a low number of images per class, thereby enhancing its potential. Furthermore, we maintain the improvement in cross-architectures and applications such as neural architecture search.
Continual learning (CL) in deep neural networks (DNNs) involves incrementally accumulating knowledge in a DNN from a growing data stream. A major challenge in CL is that non-stationary data streams cause catastrophic forgetting of previously learned abilities. A popular solution is rehearsal: storing past observations in a buffer and then sampling the buffer to update the DNN. Uniform sampling in a class-balanced manner is highly effective, and better sample selection policies have been elusive. Here, we propose a new sample selection policy called GRASP that selects the most prototypical (easy) samples first and then gradually selects less prototypical (harder) examples. GRASP has little additional compute or memory overhead compared to uniform selection, enabling it to scale to large datasets. Compared to 17 other rehearsal policies, GRASP achieves higher accuracy in CL experiments on ImageNet. Compared to uniform balanced sampling, GRASP achieves the same performance with 40% fewer updates. We also show that GRASP is effective for CL on five text classification datasets.
Semi-supervised learning for medical image segmentation presents a unique challenge of efficiently using limited labeled data while leveraging abundant unlabeled data. Despite advancements, existing methods often do not fully exploit the potential of the unlabeled data for enhancing model robustness and accuracy. In this paper, we introduce CrossMatch, a novel framework that integrates knowledge distillation with dual perturbation strategies-image-level and feature-level-to improve the model's learning from both labeled and unlabeled data. CrossMatch employs multiple encoders and decoders to generate diverse data streams, which undergo self-knowledge distillation to enhance consistency and reliability of predictions across varied perturbations. Our method significantly surpasses other state-of-the-art techniques in standard benchmarks by effectively minimizing the gap between training on labeled and unlabeled data and improving edge accuracy and generalization in medical image segmentation. The efficacy of CrossMatch is demonstrated through extensive experimental validations, showing remarkable performance improvements without increasing computational costs. Code for this implementation is made available at //github.com/AiEson/CrossMatch.git.
This paper provides insights into deep reinforcement learning (DRL) for process control from the perspective of transfer learning. We analyze the challenges of applying DRL in the field of process industries and the necessity of introducing transfer learning. Furthermore, recommendations and prospects are provided for future research directions on how transfer learning can be integrated with DRL to empower process control.
Optimal page replacement is an important problem in efficient buffer management. The range of replacement strategies known in the literature varies from simple but efficient FIFO-based algorithms to more accurate but potentially costly methods tailored to specific data access patterns. The principal issue in adopting a pattern-specific replacement logic in a DB buffer manager is to guarantee non-degradation in general high-load regimes. In this paper, we propose a new family of page replacement algorithms for DB buffer manager which demonstrate a superior performance wrt competitors on custom data access patterns and imply a low computational overhead on TPC-C. We provide theoretical foundations and an extensive experimental study on the proposed algorithms which covers synthetic benchmarks and an implementation in an open-source DB kernel evaluated on TPC-C.
With the expansion of the scale of robotics applications, the multi-goal multi-agent pathfinding (MG-MAPF) problem began to gain widespread attention. This problem requires each agent to visit pre-assigned multiple goal points at least once without conflict. Some previous methods have been proposed to solve the MG-MAPF problem based on Decoupling the goal Vertex visiting order search and the Single-agent pathfinding (DVS). However, this paper demonstrates that the methods based on DVS cannot always obtain the optimal solution. To obtain the optimal result, we propose the Multi-Goal Conflict-Based Search (MGCBS), which is based on Decoupling the goal Safe interval visiting order search and the Single-agent pathfinding (DSS). Additionally, we present the Time-Interval-Space Forest (TIS Forest) to enhance the efficiency of MGCBS by maintaining the shortest paths from any start point at any start time step to each safe interval at the goal points. The experiment demonstrates that our method can consistently obtain optimal results and execute up to 7 times faster than the state-of-the-art method in our evaluation.
The idea of using deep-learning-based molecular generation to accelerate discovery of drug candidates has attracted extraordinary attention, and many deep generative models have been developed for automated drug design, termed molecular generation. In general, molecular generation encompasses two main strategies: de novo design, which generates novel molecular structures from scratch, and lead optimization, which refines existing molecules into drug candidates. Among them, lead optimization plays an important role in real-world drug design. For example, it can enable the development of me-better drugs that are chemically distinct yet more effective than the original drugs. It can also facilitate fragment-based drug design, transforming virtual-screened small ligands with low affinity into first-in-class medicines. Despite its importance, automated lead optimization remains underexplored compared to the well-established de novo generative models, due to its reliance on complex biological and chemical knowledge. To bridge this gap, we conduct a systematic review of traditional computational methods for lead optimization, organizing these strategies into four principal sub-tasks with defined inputs and outputs. This review delves into the basic concepts, goals, conventional CADD techniques, and recent advancements in AIDD. Additionally, we introduce a unified perspective based on constrained subgraph generation to harmonize the methodologies of de novo design and lead optimization. Through this lens, de novo design can incorporate strategies from lead optimization to address the challenge of generating hard-to-synthesize molecules; inversely, lead optimization can benefit from the innovations in de novo design by approaching it as a task of generating molecules conditioned on certain substructures.
This paper explores the application of Swarm-Structured Multi-Agent Systems (MAS) to establish medical necessity, a process that involves a systematic review of patient-specific medical structured and unstructured data against clinical guidelines. We addressed this complex task by decomposing it into smaller, more manageable sub-tasks. Each sub-task is handled by a specialized AI agent. We conduct a systematic study of the impact of various prompting strategies on these agents and benchmark different Large Language Models (LLMs) to determine their accuracy in completing these tasks. Additionally, we investigate how these agents can provide explainability, thereby enhancing trust and transparency within the system.
Graph representation learning resurges as a trending research subject owing to the widespread use of deep learning for Euclidean data, which inspire various creative designs of neural networks in the non-Euclidean domain, particularly graphs. With the success of these graph neural networks (GNN) in the static setting, we approach further practical scenarios where the graph dynamically evolves. Existing approaches typically resort to node embeddings and use a recurrent neural network (RNN, broadly speaking) to regulate the embeddings and learn the temporal dynamics. These methods require the knowledge of a node in the full time span (including both training and testing) and are less applicable to the frequent change of the node set. In some extreme scenarios, the node sets at different time steps may completely differ. To resolve this challenge, we propose EvolveGCN, which adapts the graph convolutional network (GCN) model along the temporal dimension without resorting to node embeddings. The proposed approach captures the dynamism of the graph sequence through using an RNN to evolve the GCN parameters. Two architectures are considered for the parameter evolution. We evaluate the proposed approach on tasks including link prediction, edge classification, and node classification. The experimental results indicate a generally higher performance of EvolveGCN compared with related approaches. The code is available at \url{//github.com/IBM/EvolveGCN}.
We propose a novel attention gate (AG) model for medical imaging that automatically learns to focus on target structures of varying shapes and sizes. Models trained with AGs implicitly learn to suppress irrelevant regions in an input image while highlighting salient features useful for a specific task. This enables us to eliminate the necessity of using explicit external tissue/organ localisation modules of cascaded convolutional neural networks (CNNs). AGs can be easily integrated into standard CNN architectures such as the U-Net model with minimal computational overhead while increasing the model sensitivity and prediction accuracy. The proposed Attention U-Net architecture is evaluated on two large CT abdominal datasets for multi-class image segmentation. Experimental results show that AGs consistently improve the prediction performance of U-Net across different datasets and training sizes while preserving computational efficiency. The code for the proposed architecture is publicly available.
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