Medical image segmentation, which is essential for many clinical applications, has achieved almost human-level performance via data-driven deep learning technologies. Nevertheless, its performance is predicated upon the costly process of manually annotating a vast amount of medical images. To this end, we propose a novel framework for robust semi-supervised medical image segmentation using diagonal hierarchical consistency learning (DiHC-Net). First, it is composed of multiple sub-models with identical multi-scale architecture but with distinct sub-layers, such as up-sampling and normalisation layers. Second, with mutual consistency, a novel consistency regularisation is enforced between one model's intermediate and final prediction and soft pseudo labels from other models in a diagonal hierarchical fashion. A series of experiments verifies the efficacy of our simple framework, outperforming all previous approaches on public benchmark dataset on organ and tumour.
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Uncertainty quantification, once a singular task, has evolved into a spectrum of tasks, including abstained prediction, out-of-distribution detection, and aleatoric uncertainty quantification. The latest goal is disentanglement: the construction of multiple estimators that are each tailored to one and only one task. Hence, there is a plethora of recent advances with different intentions - that often entirely deviate from practical behavior. This paper conducts a comprehensive evaluation of numerous uncertainty estimators across diverse tasks on ImageNet. We find that, despite promising theoretical endeavors, disentanglement is not yet achieved in practice. Additionally, we reveal which uncertainty estimators excel at which specific tasks, providing insights for practitioners and guiding future research toward task-centric and disentangled uncertainty estimation methods. Our code is available at //github.com/bmucsanyi/bud.
This paper aims to address a common challenge in deep learning-based image transformation methods, such as image enhancement and super-resolution, which heavily rely on precisely aligned paired datasets with pixel-level alignments. However, creating precisely aligned paired images presents significant challenges and hinders the advancement of methods trained on such data. To overcome this challenge, this paper introduces a novel and simple Frequency Distribution Loss (FDL) for computing distribution distance within the frequency domain. Specifically, we transform image features into the frequency domain using Discrete Fourier Transformation (DFT). Subsequently, frequency components (amplitude and phase) are processed separately to form the FDL loss function. Our method is empirically proven effective as a training constraint due to the thoughtful utilization of global information in the frequency domain. Extensive experimental evaluations, focusing on image enhancement and super-resolution tasks, demonstrate that FDL outperforms existing misalignment-robust loss functions. Furthermore, we explore the potential of our FDL for image style transfer that relies solely on completely misaligned data. Our code is available at: //github.com/eezkni/FDL
Medical report generation (MRG) is essential for computer-aided diagnosis and medication guidance, which can relieve the heavy burden of radiologists by automatically generating the corresponding medical reports according to the given radiology image. However, due to the spurious correlations within image-text data induced by visual and linguistic biases, it is challenging to generate accurate reports reliably describing lesion areas. Moreover, the cross-modal confounders are usually unobservable and challenging to be eliminated explicitly. In this paper, we aim to mitigate the cross-modal data bias for MRG from a new perspective, i.e., cross-modal causal intervention, and propose a novel Visual-Linguistic Causal Intervention (VLCI) framework for MRG, which consists of a visual deconfounding module (VDM) and a linguistic deconfounding module (LDM), to implicitly mitigate the visual-linguistic confounders by causal front-door intervention. Specifically, due to the absence of a generalized semantic extractor, the VDM explores and disentangles the visual confounders from the patch-based local and global features without expensive fine-grained annotations. Simultaneously, due to the lack of knowledge encompassing the entire field of medicine, the LDM eliminates the linguistic confounders caused by salient visual features and high-frequency context without constructing a terminology database. Extensive experiments on IU-Xray and MIMIC-CXR datasets show that our VLCI significantly outperforms the state-of-the-art MRG methods. The code and models are available at //github.com/WissingChen/VLCI.
The heterogeneous information network (HIN), which contains rich semantics depicted by meta-paths, has emerged as a potent tool for mitigating data sparsity in recommender systems. Existing HIN-based recommender systems operate under the assumption of centralized storage and model training. However, real-world data is often distributed due to privacy concerns, leading to the semantic broken issue within HINs and consequent failures in centralized HIN-based recommendations. In this paper, we suggest the HIN is partitioned into private HINs stored on the client side and shared HINs on the server. Following this setting, we propose a federated heterogeneous graph neural network (FedHGNN) based framework, which facilitates collaborative training of a recommendation model using distributed HINs while protecting user privacy. Specifically, we first formalize the privacy definition for HIN-based federated recommendation (FedRec) in the light of differential privacy, with the goal of protecting user-item interactions within private HIN as well as users' high-order patterns from shared HINs. To recover the broken meta-path based semantics and ensure proposed privacy measures, we elaborately design a semantic-preserving user interactions publishing method, which locally perturbs user's high-order patterns and related user-item interactions for publishing. Subsequently, we introduce an HGNN model for recommendation, which conducts node- and semantic-level aggregations to capture recovered semantics. Extensive experiments on four datasets demonstrate that our model outperforms existing methods by a substantial margin (up to 34% in HR@10 and 42% in NDCG@10) under a reasonable privacy budget.
Generative models can serve as surrogates for some real data sources by creating synthetic training datasets, but in doing so they may transfer biases to downstream tasks. We focus on protecting quality and diversity when generating synthetic training datasets. We propose quality-diversity generative sampling (QDGS), a framework for sampling data uniformly across a user-defined measure space, despite the data coming from a biased generator. QDGS is a model-agnostic framework that uses prompt guidance to optimize a quality objective across measures of diversity for synthetically generated data, without fine-tuning the generative model. Using balanced synthetic datasets generated by QDGS, we first debias classifiers trained on color-biased shape datasets as a proof-of-concept. By applying QDGS to facial data synthesis, we prompt for desired semantic concepts, such as skin tone and age, to create an intersectional dataset with a combined blend of visual features. Leveraging this balanced data for training classifiers improves fairness while maintaining accuracy on facial recognition benchmarks. Code available at: //github.com/Cylumn/qd-generative-sampling.
Medical image segmentation is a fundamental and critical step in many image-guided clinical approaches. Recent success of deep learning-based segmentation methods usually relies on a large amount of labeled data, which is particularly difficult and costly to obtain especially in the medical imaging domain where only experts can provide reliable and accurate annotations. Semi-supervised learning has emerged as an appealing strategy and been widely applied to medical image segmentation tasks to train deep models with limited annotations. In this paper, we present a comprehensive review of recently proposed semi-supervised learning methods for medical image segmentation and summarized both the technical novelties and empirical results. Furthermore, we analyze and discuss the limitations and several unsolved problems of existing approaches. We hope this review could inspire the research community to explore solutions for this challenge and further promote the developments in medical image segmentation field.
Link prediction on knowledge graphs (KGs) is a key research topic. Previous work mainly focused on binary relations, paying less attention to higher-arity relations although they are ubiquitous in real-world KGs. This paper considers link prediction upon n-ary relational facts and proposes a graph-based approach to this task. The key to our approach is to represent the n-ary structure of a fact as a small heterogeneous graph, and model this graph with edge-biased fully-connected attention. The fully-connected attention captures universal inter-vertex interactions, while with edge-aware attentive biases to particularly encode the graph structure and its heterogeneity. In this fashion, our approach fully models global and local dependencies in each n-ary fact, and hence can more effectively capture associations therein. Extensive evaluation verifies the effectiveness and superiority of our approach. It performs substantially and consistently better than current state-of-the-art across a variety of n-ary relational benchmarks. Our code is publicly available.
Knowledge graph embedding, which aims to represent entities and relations as low dimensional vectors (or matrices, tensors, etc.), has been shown to be a powerful technique for predicting missing links in knowledge graphs. Existing knowledge graph embedding models mainly focus on modeling relation patterns such as symmetry/antisymmetry, inversion, and composition. However, many existing approaches fail to model semantic hierarchies, which are common in real-world applications. To address this challenge, we propose a novel knowledge graph embedding model---namely, Hierarchy-Aware Knowledge Graph Embedding (HAKE)---which maps entities into the polar coordinate system. HAKE is inspired by the fact that concentric circles in the polar coordinate system can naturally reflect the hierarchy. Specifically, the radial coordinate aims to model entities at different levels of the hierarchy, and entities with smaller radii are expected to be at higher levels; the angular coordinate aims to distinguish entities at the same level of the hierarchy, and these entities are expected to have roughly the same radii but different angles. Experiments demonstrate that HAKE can effectively model the semantic hierarchies in knowledge graphs, and significantly outperforms existing state-of-the-art methods on benchmark datasets for the link prediction task.
Deep neural network architectures have traditionally been designed and explored with human expertise in a long-lasting trial-and-error process. This process requires huge amount of time, expertise, and resources. To address this tedious problem, we propose a novel algorithm to optimally find hyperparameters of a deep network architecture automatically. We specifically focus on designing neural architectures for medical image segmentation task. Our proposed method is based on a policy gradient reinforcement learning for which the reward function is assigned a segmentation evaluation utility (i.e., dice index). We show the efficacy of the proposed method with its low computational cost in comparison with the state-of-the-art medical image segmentation networks. We also present a new architecture design, a densely connected encoder-decoder CNN, as a strong baseline architecture to apply the proposed hyperparameter search algorithm. We apply the proposed algorithm to each layer of the baseline architectures. As an application, we train the proposed system on cine cardiac MR images from Automated Cardiac Diagnosis Challenge (ACDC) MICCAI 2017. Starting from a baseline segmentation architecture, the resulting network architecture obtains the state-of-the-art results in accuracy without performing any trial-and-error based architecture design approaches or close supervision of the hyperparameters changes.
Image segmentation is considered to be one of the critical tasks in hyperspectral remote sensing image processing. Recently, convolutional neural network (CNN) has established itself as a powerful model in segmentation and classification by demonstrating excellent performances. The use of a graphical model such as a conditional random field (CRF) contributes further in capturing contextual information and thus improving the segmentation performance. In this paper, we propose a method to segment hyperspectral images by considering both spectral and spatial information via a combined framework consisting of CNN and CRF. We use multiple spectral cubes to learn deep features using CNN, and then formulate deep CRF with CNN-based unary and pairwise potential functions to effectively extract the semantic correlations between patches consisting of three-dimensional data cubes. Effective piecewise training is applied in order to avoid the computationally expensive iterative CRF inference. Furthermore, we introduce a deep deconvolution network that improves the segmentation masks. We also introduce a new dataset and experimented our proposed method on it along with several widely adopted benchmark datasets to evaluate the effectiveness of our method. By comparing our results with those from several state-of-the-art models, we show the promising potential of our method.
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