Image augmentations are quintessential for effective visual representation learning across self-supervised learning techniques. While augmentation strategies for natural imaging have been studied extensively, medical images are vastly different from their natural counterparts. Thus, it is unknown whether common augmentation strategies employed in Siamese representation learning generalize to medical images and to what extent. To address this challenge, in this study, we systematically assess the effect of various augmentations on the quality and robustness of the learned representations. We train and evaluate Siamese Networks for abnormality detection on chest X-Rays across three large datasets (MIMIC-CXR, CheXpert and VinDR-CXR). We investigate the efficacy of the learned representations through experiments involving linear probing, fine-tuning, zero-shot transfer, and data efficiency. Finally, we identify a set of augmentations that yield robust representations that generalize well to both out-of-distribution data and diseases, while outperforming supervised baselines using just zero-shot transfer and linear probes by up to 20%. Our code is available at //github.com/StanfordMIMI/siaug.
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Whole-program analysis is an essential technique that enables advanced compiler optimizations. An important example of such a method is points-to analysis used by ahead-of-time (AOT) compilers to discover program elements (classes, methods, fields) used on at least one program path. GraalVM Native Image uses a points-to analysis to optimize Java applications, which is a time-consuming step of the build. We explore how much the analysis time can be improved by replacing the points-to analysis with a rapid type analysis (RTA), which computes reachable elements faster by allowing more imprecision. We propose several extensions of previous approaches to RTA: making it parallel, incremental, and supporting heap snapshotting. We present an extensive experimental evaluation of the effects of using RTA instead of points-to analysis, in which RTA allowed us to reduce the analysis time for Spring Petclinic, a popular demo application of the Spring framework, by 64% and the overall build time by 35% at the cost of increasing the image size due to the imprecision by 15%.
Vision-language models (VLMs) have shown powerful capabilities in visual question answering and reasoning tasks by combining visual representations with the abstract skill set large language models (LLMs) learn during pretraining. Vision, while the most popular modality to augment LLMs with, is only one representation of a scene. In human-robot interaction scenarios, robot perception requires accurate scene understanding by the robot. In this paper, we define and demonstrate a method of aligning the embedding spaces of different modalities (in this case, inertial measurement unit (IMU) data) to the vision embedding space through a combination of supervised and contrastive training, enabling the VLM to understand and reason about these additional modalities without retraining. We opt to give the model IMU embeddings directly over using a separate human activity recognition model that feeds directly into the prompt to allow for any nonlinear interactions between the query, image, and IMU signal that would be lost by mapping the IMU data to a discrete activity label. Further, we demonstrate our methodology's efficacy through experiments involving human activity recognition using IMU data and visual inputs. Our results show that using multiple modalities as input improves the VLM's scene understanding and enhances its overall performance in various tasks, thus paving the way for more versatile and capable language models in multi-modal contexts.
The development of learning-based methods has greatly improved the detection of synapses from electron microscopy (EM) images. However, training a model for each dataset is time-consuming and requires extensive annotations. Additionally, it is difficult to apply a learned model to data from different brain regions due to variations in data distributions. In this paper, we present AdaSyn, a two-stage segmentation-based framework for domain adaptive synapse detection with weak point annotations. In the first stage, we address the detection problem by utilizing a segmentation-based pipeline to obtain synaptic instance masks. In the second stage, we improve model generalizability on target data by regenerating square masks to get high-quality pseudo labels. Benefiting from our high-accuracy detection results, we introduce the distance nearest principle to match paired pre-synapses and post-synapses. In the WASPSYN challenge at ISBI 2023, our method ranks the 1st place.
Quality-sensitive applications of machine learning (ML) require quality assurance (QA) by humans before the predictions of an ML model can be deployed. QA for ML (QA4ML) interfaces require users to view a large amount of data and perform many interactions to correct errors made by the ML model. An optimized user interface (UI) can significantly reduce interaction costs. While UI optimization can be informed by user studies evaluating design options, this approach is not scalable because there are typically numerous small variations that can affect the efficiency of a QA4ML interface. Hence, we propose using simulation to evaluate and aid the optimization of QA4ML interfaces. In particular, we focus on simulating the combined effects of human intelligence in initiating appropriate interaction commands and machine intelligence in providing algorithmic assistance for accelerating QA4ML processes. As QA4ML is usually labor-intensive, we use the simulated task completion time as the metric for UI optimization under different interface and algorithm setups. We demonstrate the usage of this UI design method in several QA4ML applications.
Extremely large-scale multiple-input multiple-output (XL-MIMO) is a promising technique to enable versatile applications for future wireless communications.To realize the huge potential performance gain, accurate channel state information is a fundamental technical prerequisite. In conventional massive MIMO, the channel is often modeled by the far-field planar-wavefront with rich sparsity in the angular domain that facilitates the design of low-complexity channel estimation. However, this sparsity is not conspicuous in XL-MIMO systems due to the non-negligible near-field spherical-wavefront. To address the inherent performance loss of the angular-domain channel estimation schemes, we first propose the polar-domain multiple residual dense network (P-MRDN) for XL-MIMO systems based on the polar-domain sparsity of the near-field channel by improving the existing MRDN scheme. Furthermore, a polar-domain multi-scale residual dense network (P-MSRDN) is designed to improve the channel estimation accuracy. Finally, simulation results reveal the superior performance of the proposed schemes compared with existing benchmark schemes and the minimal influence of the channel sparsity on the proposed schemes.
The existence of representative datasets is a prerequisite of many successful artificial intelligence and machine learning models. However, the subsequent application of these models often involves scenarios that are inadequately represented in the data used for training. The reasons for this are manifold and range from time and cost constraints to ethical considerations. As a consequence, the reliable use of these models, especially in safety-critical applications, is a huge challenge. Leveraging additional, already existing sources of knowledge is key to overcome the limitations of purely data-driven approaches, and eventually to increase the generalization capability of these models. Furthermore, predictions that conform with knowledge are crucial for making trustworthy and safe decisions even in underrepresented scenarios. This work provides an overview of existing techniques and methods in the literature that combine data-based models with existing knowledge. The identified approaches are structured according to the categories integration, extraction and conformity. Special attention is given to applications in the field of autonomous driving.
Data augmentation, the artificial creation of training data for machine learning by transformations, is a widely studied research field across machine learning disciplines. While it is useful for increasing the generalization capabilities of a model, it can also address many other challenges and problems, from overcoming a limited amount of training data over regularizing the objective to limiting the amount data used to protect privacy. Based on a precise description of the goals and applications of data augmentation (C1) and a taxonomy for existing works (C2), this survey is concerned with data augmentation methods for textual classification and aims to achieve a concise and comprehensive overview for researchers and practitioners (C3). Derived from the taxonomy, we divided more than 100 methods into 12 different groupings and provide state-of-the-art references expounding which methods are highly promising (C4). Finally, research perspectives that may constitute a building block for future work are given (C5).
Meta-learning extracts the common knowledge acquired from learning different tasks and uses it for unseen tasks. It demonstrates a clear advantage on tasks that have insufficient training data, e.g., few-shot learning. In most meta-learning methods, tasks are implicitly related via the shared model or optimizer. In this paper, we show that a meta-learner that explicitly relates tasks on a graph describing the relations of their output dimensions (e.g., classes) can significantly improve the performance of few-shot learning. This type of graph is usually free or cheap to obtain but has rarely been explored in previous works. We study the prototype based few-shot classification, in which a prototype is generated for each class, such that the nearest neighbor search between the prototypes produces an accurate classification. We introduce "Gated Propagation Network (GPN)", which learns to propagate messages between prototypes of different classes on the graph, so that learning the prototype of each class benefits from the data of other related classes. In GPN, an attention mechanism is used for the aggregation of messages from neighboring classes, and a gate is deployed to choose between the aggregated messages and the message from the class itself. GPN is trained on a sequence of tasks from many-shot to few-shot generated by subgraph sampling. During training, it is able to reuse and update previously achieved prototypes from the memory in a life-long learning cycle. In experiments, we change the training-test discrepancy and test task generation settings for thorough evaluations. GPN outperforms recent meta-learning methods on two benchmark datasets in all studied cases.
Deep learning (DL) based semantic segmentation methods have been providing state-of-the-art performance in the last few years. More specifically, these techniques have been successfully applied to medical image classification, segmentation, and detection tasks. One deep learning technique, U-Net, has become one of the most popular for these applications. In this paper, we propose a Recurrent Convolutional Neural Network (RCNN) based on U-Net as well as a Recurrent Residual Convolutional Neural Network (RRCNN) based on U-Net models, which are named RU-Net and R2U-Net respectively. The proposed models utilize the power of U-Net, Residual Network, as well as RCNN. There are several advantages of these proposed architectures for segmentation tasks. First, a residual unit helps when training deep architecture. Second, feature accumulation with recurrent residual convolutional layers ensures better feature representation for segmentation tasks. Third, it allows us to design better U-Net architecture with same number of network parameters with better performance for medical image segmentation. The proposed models are tested on three benchmark datasets such as blood vessel segmentation in retina images, skin cancer segmentation, and lung lesion segmentation. The experimental results show superior performance on segmentation tasks compared to equivalent models including U-Net and residual U-Net (ResU-Net).
Recently, deep learning has achieved very promising results in visual object tracking. Deep neural networks in existing tracking methods require a lot of training data to learn a large number of parameters. However, training data is not sufficient for visual object tracking as annotations of a target object are only available in the first frame of a test sequence. In this paper, we propose to learn hierarchical features for visual object tracking by using tree structure based Recursive Neural Networks (RNN), which have fewer parameters than other deep neural networks, e.g. Convolutional Neural Networks (CNN). First, we learn RNN parameters to discriminate between the target object and background in the first frame of a test sequence. Tree structure over local patches of an exemplar region is randomly generated by using a bottom-up greedy search strategy. Given the learned RNN parameters, we create two dictionaries regarding target regions and corresponding local patches based on the learned hierarchical features from both top and leaf nodes of multiple random trees. In each of the subsequent frames, we conduct sparse dictionary coding on all candidates to select the best candidate as the new target location. In addition, we online update two dictionaries to handle appearance changes of target objects. Experimental results demonstrate that our feature learning algorithm can significantly improve tracking performance on benchmark datasets.
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