As we have entered Exascale computing, the faults in high-performance systems are expected to increase considerably. To compensate for a higher failure rate, the standard checkpoint/restart technique would need to create checkpoints at a much higher frequency resulting in an excessive amount of overhead which would not be sustainable for many scientific applications. Replication allows for fast recovery from failures by simply dropping the failed processes and using their replicas to continue the regular operation of the application. In this paper, we have implemented PartRePer-MPI, a novel fault-tolerant MPI library that adopts partial replication of some of the launched MPI processes in order to provide resilience from failures. The novelty of our work is that it combines both fault tolerance, due to the use of the User Level Failure Mitigation (ULFM) framework in the Open MPI library, and high performance, due to the use of communication protocols in the native MPI library that is generally fine-tuned for specific HPC platforms. We have implemented efficient and parallel communication strategies with computational and replica processes, and our library can seamlessly provide fault tolerance support to an existing MPI application. Our experiments using seven NAS Parallel Benchmarks and two scientific applications show that the failure-free overheads in PartRePer-MPI when compared to the baseline MVAPICH2, are only up to 6.4% for the NAS parallel benchmarks and up to 9.7% for the scientific applications.
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Recently, the evaluation of Large Language Models has emerged as a popular area of research. The three crucial questions for LLM evaluation are ``what, where, and how to evaluate''. However, the existing research mainly focuses on the first two questions, which are basically what tasks to give the LLM during testing and what kind of knowledge it should deal with. As for the third question, which is about what standards to use, the types of evaluators, how to score, and how to rank, there hasn't been much discussion. In this paper, we analyze evaluation methods by comparing various criteria with both manual and automatic evaluation, utilizing onsite, crowd-sourcing, public annotators and GPT-4, with different scoring methods and ranking systems. We propose a new dataset, LLMEval and conduct evaluations on 20 LLMs. A total of 2,186 individuals participated, leading to the generation of 243,337 manual annotations and 57,511 automatic evaluation results. We perform comparisons and analyses of different settings and conduct 10 conclusions that can provide some insights for evaluating LLM in the future. The dataset and the results are publicly available at //github.com/llmeval .
As optimization challenges continue to evolve, so too must our tools and understanding. To effectively assess, validate, and compare optimization algorithms, it is crucial to use a benchmark test suite that encompasses a diverse range of problem instances with various characteristics. Traditional benchmark suites often consist of numerous fixed test functions, making it challenging to align these with specific research objectives, such as the systematic evaluation of algorithms under controllable conditions. This paper introduces the Generalized Numerical Benchmark Generator (GNBG) for single-objective, box-constrained, continuous numerical optimization. Unlike existing approaches that rely on multiple baseline functions and transformations, GNBG utilizes a single, parametric, and configurable baseline function. This design allows for control over various problem characteristics. Researchers using GNBG can generate instances that cover a broad array of morphological features, from unimodal to highly multimodal functions, various local optima patterns, and symmetric to highly asymmetric structures. The generated problems can also vary in separability, variable interaction structures, dimensionality, conditioning, and basin shapes. These customizable features enable the systematic evaluation and comparison of optimization algorithms, allowing researchers to probe their strengths and weaknesses under diverse and controllable conditions.
Researchers produce thousands of scholarly documents containing valuable technical knowledge. The community faces the laborious task of reading these documents to identify, extract, and synthesize information. To automate information gathering, document-level question answering (QA) offers a flexible framework where human-posed questions can be adapted to extract diverse knowledge. Finetuning QA systems requires access to labeled data (tuples of context, question and answer). However, data curation for document QA is uniquely challenging because the context (i.e. answer evidence passage) needs to be retrieved from potentially long, ill-formatted documents. Existing QA datasets sidestep this challenge by providing short, well-defined contexts that are unrealistic in real-world applications. We present a three-stage document QA approach: (1) text extraction from PDF; (2) evidence retrieval from extracted texts to form well-posed contexts; (3) QA to extract knowledge from contexts to return high-quality answers -- extractive, abstractive, or Boolean. Using QASPER for evaluation, our detect-retrieve-comprehend (DRC) system achieves a +7.19 improvement in Answer-F1 over existing baselines while delivering superior context selection. Our results demonstrate that DRC holds tremendous promise as a flexible framework for practical scientific document QA.
Generative Large Language Models (LLMs), such as ChatGPT, offer interactive APIs that can answer common questions at a human-expert level. However, these models often give inaccurate or incorrect responses when faced with questions requiring domain-specific or professional-specific knowledge not covered in their training corpus. Furthermore, many state-of-the-art LLMs are not open-source, making it challenging to inject knowledge with model APIs only. In this work, we introduce KnowGPT, a black-box knowledge injection framework for LLMs in question answering. KnowGPT leverages deep reinforcement learning (RL) to extract relevant knowledge from Knowledge Graphs (KGs) and use Multi-Armed Bandit (MAB) to construct the most suitable prompt for each question. Our extensive experiments on three benchmark datasets showcase that KnowGPT significantly enhances the existing methods. Notably, KnowGPT achieves an average improvement of 23.7% over ChatGPT and an average improvement of 2.9% over GPT-4. Additionally, KnowGPT attains a 91.6% accuracy on the OpenbookQA official leaderboard, which is comparable to human-level performance.
Operational Technology (OT) networks of industrial control systems (ICS) are increasingly connected to the public Internet, which has prompted ICSes to implement strong security measures (e.g., authentication and encryption) to protect end-to-end control communication. Despite the security measures, we show that an Internet adversary in the path of an ICS's communication can cause damage to the ICS without infiltrating it. We present ICS-Sniper, a targeted blackhole attack that analyzes the packet metadata (sizes, timing) to identify the packets carrying critical ICS commands or data, and drops the critical packets to disrupt the ICS's operations. We demonstrate two attacks on an emulation of a Secure Water Treatment (SWaT) plant that can potentially violate the operational safety of the ICS while evading state-of-the-art detection systems.
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.
Deep Learning has implemented a wide range of applications and has become increasingly popular in recent years. The goal of multimodal deep learning is to create models that can process and link information using various modalities. Despite the extensive development made for unimodal learning, it still cannot cover all the aspects of human learning. Multimodal learning helps to understand and analyze better when various senses are engaged in the processing of information. This paper focuses on multiple types of modalities, i.e., image, video, text, audio, body gestures, facial expressions, and physiological signals. Detailed analysis of past and current baseline approaches and an in-depth study of recent advancements in multimodal deep learning applications has been provided. A fine-grained taxonomy of various multimodal deep learning applications is proposed, elaborating on different applications in more depth. Architectures and datasets used in these applications are also discussed, along with their evaluation metrics. Last, main issues are highlighted separately for each domain along with their possible future research directions.
Knowledge graphs are important resources for many artificial intelligence tasks but often suffer from incompleteness. In this work, we propose to use pre-trained language models for knowledge graph completion. We treat triples in knowledge graphs as textual sequences and propose a novel framework named Knowledge Graph Bidirectional Encoder Representations from Transformer (KG-BERT) to model these triples. Our method takes entity and relation descriptions of a triple as input and computes scoring function of the triple with the KG-BERT language model. Experimental results on multiple benchmark knowledge graphs show that our method can achieve state-of-the-art performance in triple classification, link prediction and relation prediction tasks.
Most existing works in visual question answering (VQA) are dedicated to improving the accuracy of predicted answers, while disregarding the explanations. We argue that the explanation for an answer is of the same or even more importance compared with the answer itself, since it makes the question and answering process more understandable and traceable. To this end, we propose a new task of VQA-E (VQA with Explanation), where the computational models are required to generate an explanation with the predicted answer. We first construct a new dataset, and then frame the VQA-E problem in a multi-task learning architecture. Our VQA-E dataset is automatically derived from the VQA v2 dataset by intelligently exploiting the available captions. We have conducted a user study to validate the quality of explanations synthesized by our method. We quantitatively show that the additional supervision from explanations can not only produce insightful textual sentences to justify the answers, but also improve the performance of answer prediction. Our model outperforms the state-of-the-art methods by a clear margin on the VQA v2 dataset.
Many natural language processing tasks solely rely on sparse dependencies between a few tokens in a sentence. Soft attention mechanisms show promising performance in modeling local/global dependencies by soft probabilities between every two tokens, but they are not effective and efficient when applied to long sentences. By contrast, hard attention mechanisms directly select a subset of tokens but are difficult and inefficient to train due to their combinatorial nature. In this paper, we integrate both soft and hard attention into one context fusion model, "reinforced self-attention (ReSA)", for the mutual benefit of each other. In ReSA, a hard attention trims a sequence for a soft self-attention to process, while the soft attention feeds reward signals back to facilitate the training of the hard one. For this purpose, we develop a novel hard attention called "reinforced sequence sampling (RSS)", selecting tokens in parallel and trained via policy gradient. Using two RSS modules, ReSA efficiently extracts the sparse dependencies between each pair of selected tokens. We finally propose an RNN/CNN-free sentence-encoding model, "reinforced self-attention network (ReSAN)", solely based on ReSA. It achieves state-of-the-art performance on both Stanford Natural Language Inference (SNLI) and Sentences Involving Compositional Knowledge (SICK) datasets.
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