We address the challenging problem of whole slide image (WSI) classification. WSIs have very high resolutions and usually lack localized annotations. WSI classification can be cast as a multiple instance learning (MIL) problem when only slide-level labels are available. We propose a MIL-based method for WSI classification and tumor detection that does not require localized annotations. Our method has three major components. First, we introduce a novel MIL aggregator that models the relations of the instances in a dual-stream architecture with trainable distance measurement. Second, since WSIs can produce large or unbalanced bags that hinder the training of MIL models, we propose to use self-supervised contrastive learning to extract good representations for MIL and alleviate the issue of prohibitive memory cost for large bags. Third, we adopt a pyramidal fusion mechanism for multiscale WSI features, and further improve the accuracy of classification and localization. Our model is evaluated on two representative WSI datasets. The classification accuracy of our model compares favorably to fully-supervised methods, with less than 2% accuracy gap across datasets. Our results also outperform all previous MIL-based methods. Additional benchmark results on standard MIL datasets further demonstrate the superior performance of our MIL aggregator on general MIL problems. GitHub repository: //github.com/binli123/dsmil-wsi
Deep learning has demonstrated significant improvements in medical image segmentation using a sufficiently large amount of training data with manual labels. Acquiring well-representative labels requires expert knowledge and exhaustive labors. In this paper, we aim to boost the performance of semi-supervised learning for medical image segmentation with limited labels using a self-ensembling contrastive learning technique. To this end, we propose to train an encoder-decoder network at image-level with small amounts of labeled images, and more importantly, we learn latent representations directly at feature-level by imposing contrastive loss on unlabeled images. This method strengthens intra-class compactness and inter-class separability, so as to get a better pixel classifier. Moreover, we devise a student encoder for online learning and an exponential moving average version of it, called teacher encoder, to improve the performance iteratively in a self-ensembling manner. To construct contrastive samples with unlabeled images, two sampling strategies that exploit structure similarity across medical images and utilize pseudo-labels for construction, termed region-aware and anatomical-aware contrastive sampling, are investigated. We conduct extensive experiments on an MRI and a CT segmentation dataset and demonstrate that in a limited label setting, the proposed method achieves state-of-the-art performance. Moreover, the anatomical-aware strategy that prepares contrastive samples on-the-fly using pseudo-labels realizes better contrastive regularization on feature representations.
To date, most existing self-supervised learning methods are designed and optimized for image classification. These pre-trained models can be sub-optimal for dense prediction tasks due to the discrepancy between image-level prediction and pixel-level prediction. To fill this gap, we aim to design an effective, dense self-supervised learning method that directly works at the level of pixels (or local features) by taking into account the correspondence between local features. We present dense contrastive learning, which implements self-supervised learning by optimizing a pairwise contrastive (dis)similarity loss at the pixel level between two views of input images. Compared to the baseline method MoCo-v2, our method introduces negligible computation overhead (only <1% slower), but demonstrates consistently superior performance when transferring to downstream dense prediction tasks including object detection, semantic segmentation and instance segmentation; and outperforms the state-of-the-art methods by a large margin. Specifically, over the strong MoCo-v2 baseline, our method achieves significant improvements of 2.0% AP on PASCAL VOC object detection, 1.1% AP on COCO object detection, 0.9% AP on COCO instance segmentation, 3.0% mIoU on PASCAL VOC semantic segmentation and 1.8% mIoU on Cityscapes semantic segmentation. Code is available at: //git.io/AdelaiDet
Learning discriminative image representations plays a vital role in long-tailed image classification because it can ease the classifier learning in imbalanced cases. Given the promising performance contrastive learning has shown recently in representation learning, in this work, we explore effective supervised contrastive learning strategies and tailor them to learn better image representations from imbalanced data in order to boost the classification accuracy thereon. Specifically, we propose a novel hybrid network structure being composed of a supervised contrastive loss to learn image representations and a cross-entropy loss to learn classifiers, where the learning is progressively transited from feature learning to the classifier learning to embody the idea that better features make better classifiers. We explore two variants of contrastive loss for feature learning, which vary in the forms but share a common idea of pulling the samples from the same class together in the normalized embedding space and pushing the samples from different classes apart. One of them is the recently proposed supervised contrastive (SC) loss, which is designed on top of the state-of-the-art unsupervised contrastive loss by incorporating positive samples from the same class. The other is a prototypical supervised contrastive (PSC) learning strategy which addresses the intensive memory consumption in standard SC loss and thus shows more promise under limited memory budget. Extensive experiments on three long-tailed classification datasets demonstrate the advantage of the proposed contrastive learning based hybrid networks in long-tailed classification.
Unsupervised aspect detection (UAD) aims at automatically extracting interpretable aspects and identifying aspect-specific segments (such as sentences) from online reviews. However, recent deep learning-based topic models, specifically aspect-based autoencoder, suffer from several problems, such as extracting noisy aspects and poorly mapping aspects discovered by models to the aspects of interest. To tackle these challenges, in this paper, we first propose a self-supervised contrastive learning framework and an attention-based model equipped with a novel smooth self-attention (SSA) module for the UAD task in order to learn better representations for aspects and review segments. Secondly, we introduce a high-resolution selective mapping (HRSMap) method to efficiently assign aspects discovered by the model to aspects of interest. We also propose using a knowledge distilling technique to further improve the aspect detection performance. Our methods outperform several recent unsupervised and weakly supervised approaches on publicly available benchmark user review datasets. Aspect interpretation results show that extracted aspects are meaningful, have good coverage, and can be easily mapped to aspects of interest. Ablation studies and attention weight visualization also demonstrate the effectiveness of SSA and the knowledge distilling method.
Video Question Answering (Video QA) requires fine-grained understanding of both video and language modalities to answer the given questions. In this paper, we propose novel training schemes for multiple-choice video question answering with a self-supervised pre-training stage and a supervised contrastive learning in the main stage as an auxiliary learning. In the self-supervised pre-training stage, we transform the original problem format of predicting the correct answer into the one that predicts the relevant question to provide a model with broader contextual inputs without any further dataset or annotation. For contrastive learning in the main stage, we add a masking noise to the input corresponding to the ground-truth answer, and consider the original input of the ground-truth answer as a positive sample, while treating the rest as negative samples. By mapping the positive sample closer to the masked input, we show that the model performance is improved. We further employ locally aligned attention to focus more effectively on the video frames that are particularly relevant to the given corresponding subtitle sentences. We evaluate our proposed model on highly competitive benchmark datasets related to multiple-choice video QA: TVQA, TVQA+, and DramaQA. Experimental results show that our model achieves state-of-the-art performance on all datasets. We also validate our approaches through further analyses.
We consider the question: how can you sample good negative examples for contrastive learning? We argue that, as with metric learning, learning contrastive representations benefits from hard negative samples (i.e., points that are difficult to distinguish from an anchor point). The key challenge toward using hard negatives is that contrastive methods must remain unsupervised, making it infeasible to adopt existing negative sampling strategies that use label information. In response, we develop a new class of unsupervised methods for selecting hard negative samples where the user can control the amount of hardness. A limiting case of this sampling results in a representation that tightly clusters each class, and pushes different classes as far apart as possible. The proposed method improves downstream performance across multiple modalities, requires only few additional lines of code to implement, and introduces no computational overhead.
Graph-based Semi-Supervised Learning (SSL) aims to transfer the labels of a handful of labeled data to the remaining massive unlabeled data via a graph. As one of the most popular graph-based SSL approaches, the recently proposed Graph Convolutional Networks (GCNs) have gained remarkable progress by combining the sound expressiveness of neural networks with graph structure. Nevertheless, the existing graph-based methods do not directly address the core problem of SSL, i.e., the shortage of supervision, and thus their performances are still very limited. To accommodate this issue, a novel GCN-based SSL algorithm is presented in this paper to enrich the supervision signals by utilizing both data similarities and graph structure. Firstly, by designing a semi-supervised contrastive loss, improved node representations can be generated via maximizing the agreement between different views of the same data or the data from the same class. Therefore, the rich unlabeled data and the scarce yet valuable labeled data can jointly provide abundant supervision information for learning discriminative node representations, which helps improve the subsequent classification result. Secondly, the underlying determinative relationship between the data features and input graph topology is extracted as supplementary supervision signals for SSL via using a graph generative loss related to the input features. Intensive experimental results on a variety of real-world datasets firmly verify the effectiveness of our algorithm compared with other state-of-the-art methods.
Few-shot image classification aims to classify unseen classes with limited labeled samples. Recent works benefit from the meta-learning process with episodic tasks and can fast adapt to class from training to testing. Due to the limited number of samples for each task, the initial embedding network for meta learning becomes an essential component and can largely affects the performance in practice. To this end, many pre-trained methods have been proposed, and most of them are trained in supervised way with limited transfer ability for unseen classes. In this paper, we proposed to train a more generalized embedding network with self-supervised learning (SSL) which can provide slow and robust representation for downstream tasks by learning from the data itself. We evaluate our work by extensive comparisons with previous baseline methods on two few-shot classification datasets ({\em i.e.,} MiniImageNet and CUB). Based on the evaluation results, the proposed method achieves significantly better performance, i.e., improve 1-shot and 5-shot tasks by nearly \textbf{3\%} and \textbf{4\%} on MiniImageNet, by nearly \textbf{9\%} and \textbf{3\%} on CUB. Moreover, the proposed method can gain the improvement of (\textbf{15\%}, \textbf{13\%}) on MiniImageNet and (\textbf{15\%}, \textbf{8\%}) on CUB by pretraining using more unlabeled data. Our code will be available at \hyperref[//github.com/phecy/SSL-FEW-SHOT.]{//github.com/phecy/ssl-few-shot.}
Most existing approaches to disfluency detection heavily rely on human-annotated data, which is expensive to obtain in practice. To tackle the training data bottleneck, we investigate methods for combining multiple self-supervised tasks-i.e., supervised tasks where data can be collected without manual labeling. First, we construct large-scale pseudo training data by randomly adding or deleting words from unlabeled news data, and propose two self-supervised pre-training tasks: (i) tagging task to detect the added noisy words. (ii) sentence classification to distinguish original sentences from grammatically-incorrect sentences. We then combine these two tasks to jointly train a network. The pre-trained network is then fine-tuned using human-annotated disfluency detection training data. Experimental results on the commonly used English Switchboard test set show that our approach can achieve competitive performance compared to the previous systems (trained using the full dataset) by using less than 1% (1000 sentences) of the training data. Our method trained on the full dataset significantly outperforms previous methods, reducing the error by 21% on English Switchboard.
Recently popularized graph neural networks achieve the state-of-the-art accuracy on a number of standard benchmark datasets for graph-based semi-supervised learning, improving significantly over existing approaches. These architectures alternate between a propagation layer that aggregates the hidden states of the local neighborhood and a fully-connected layer. Perhaps surprisingly, we show that a linear model, that removes all the intermediate fully-connected layers, is still able to achieve a performance comparable to the state-of-the-art models. This significantly reduces the number of parameters, which is critical for semi-supervised learning where number of labeled examples are small. This in turn allows a room for designing more innovative propagation layers. Based on this insight, we propose a novel graph neural network that removes all the intermediate fully-connected layers, and replaces the propagation layers with attention mechanisms that respect the structure of the graph. The attention mechanism allows us to learn a dynamic and adaptive local summary of the neighborhood to achieve more accurate predictions. In a number of experiments on benchmark citation networks datasets, we demonstrate that our approach outperforms competing methods. By examining the attention weights among neighbors, we show that our model provides some interesting insights on how neighbors influence each other.