In some medical imaging tasks and other settings where only small parts of the image are informative for the classification task, traditional CNNs can sometimes struggle to generalise. Manually annotated Regions of Interest (ROI) are sometimes used to isolate the most informative parts of the image. However, these are expensive to collect and may vary significantly across annotators. To overcome these issues, we propose a framework that employs saliency maps to obtain soft spatial attention masks that modulate the image features at different scales. We refer to our method as Adversarial Counterfactual Attention (ACAT). ACAT increases the baseline classification accuracy of lesions in brain CT scans from 71.39% to 72.55% and of COVID-19 related findings in lung CT scans from 67.71% to 70.84% and exceeds the performance of competing methods. We investigate the best way to generate the saliency maps employed in our architecture and propose a way to obtain them from adversarially generated counterfactual images. They are able to isolate the area of interest in brain and lung CT scans without using any manual annotations. In the task of localising the lesion location out of 6 possible regions, they obtain a score of 65.05% on brain CT scans, improving the score of 61.29% obtained with the best competing method.
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This paper explores the use of text data augmentation techniques to enhance conflict and duplicate detection in software engineering tasks through sentence pair classification. The study adapts generic augmentation techniques such as shuffling, back translation, and paraphrasing and proposes new data augmentation techniques such as Noun-Verb Substitution, target-lemma replacement and Actor-Action Substitution for software requirement texts. A comprehensive empirical analysis is conducted on six software text datasets to identify conflicts and duplicates among sentence pairs. The results demonstrate that data augmentation techniques have a significant impact on the performance of all software pair text datasets. On the other hand, in cases where the datasets are relatively balanced, the use of augmentation techniques may result in a negative effect on the classification performance.
Multi-object rearrangement is a crucial skill for service robots, and commonsense reasoning is frequently needed in this process. However, achieving commonsense arrangements requires knowledge about objects, which is hard to transfer to robots. Large language models (LLMs) are one potential source of this knowledge, but they do not naively capture information about plausible physical arrangements of the world. We propose LLM-GROP, which uses prompting to extract commonsense knowledge about semantically valid object configurations from an LLM and instantiates them with a task and motion planner in order to generalize to varying scene geometry. LLM-GROP allows us to go from natural-language commands to human-aligned object rearrangement in varied environments. Based on human evaluations, our approach achieves the highest rating while outperforming competitive baselines in terms of success rate while maintaining comparable cumulative action costs. Finally, we demonstrate a practical implementation of LLM-GROP on a mobile manipulator in real-world scenarios. Supplementary materials are available at: //sites.google.com/view/llm-grop
While natural language processing tools have been developed extensively for some of the world's languages, a significant portion of the world's over 7000 languages are still neglected. One reason for this is that evaluation datasets do not yet cover a wide range of languages, including low-resource and endangered ones. We aim to address this issue by creating a text classification dataset encompassing a large number of languages, many of which currently have little to no annotated data available. We leverage parallel translations of the Bible to construct such a dataset by first developing applicable topics and employing a crowdsourcing tool to collect annotated data. By annotating the English side of the data and projecting the labels onto other languages through aligned verses, we generate text classification datasets for more than 1500 languages. We extensively benchmark several existing multilingual language models using our dataset. To facilitate the advancement of research in this area, we will release our dataset and code.
With deep learning deployed in many security-sensitive areas, machine learning security is becoming progressively important. Recent studies demonstrate attackers can exploit system-level techniques exploiting the RowHammer vulnerability of DRAM to deterministically and precisely flip bits in Deep Neural Networks (DNN) model weights to affect inference accuracy. The existing defense mechanisms are software-based, such as weight reconstruction requiring expensive training overhead or performance degradation. On the other hand, generic hardware-based victim-/aggressor-focused mechanisms impose expensive hardware overheads and preserve the spatial connection between victim and aggressor rows. In this paper, we present the first DRAM-based victim-focused defense mechanism tailored for quantized DNNs, named DNN-Defender that leverages the potential of in-DRAM swapping to withstand the targeted bit-flip attacks. Our results indicate that DNN-Defender can deliver a high level of protection downgrading the performance of targeted RowHammer attacks to a random attack level. In addition, the proposed defense has no accuracy drop on CIFAR-10 and ImageNet datasets without requiring any software training or incurring additional hardware overhead.
Neural network-based techniques for automated program repair are becoming increasingly effective. Despite their success, little is known about why they succeed or fail, and how their way of reasoning about the code to repair compares to human developers. This paper presents the first in-depth study comparing human and neural program repair. In particular, we investigate what parts of the buggy code humans and two state of the art neural repair models focus on. This comparison is enabled by a novel attention-tracking interface for human code editing, based on which we gather a dataset of 98 bug fixing sessions, and on the attention layers of neural repair models. Our results show that the attention of the humans and both neural models often overlaps (0.35 to 0.44 correlation). At the same time, the agreement between humans and models still leaves room for improvement, as evidenced by the higher human-human correlation of 0.56. While the two models either focus mostly on the buggy line or on the surrounding context, the developers adopt a hybrid approach that evolves over time, where 36.8% of the attention is given to the buggy line and the rest to the context. Overall, we find the humans to still be clearly more effective at finding a correct fix, with 67.3% vs. less than 3% correctly predicted patches. The results and data of this study are a first step into a deeper understanding of the internal process of neural program repair, and offer insights inspired by the behavior of human developers on how to further improve neural repair models.
Fine-grained visual classification (FGVC) is a challenging computer vision problem, where the task is to automatically recognise objects from subordinate categories. One of its main difficulties is capturing the most discriminative inter-class variances among visually similar classes. Recently, methods with Vision Transformer (ViT) have demonstrated noticeable achievements in FGVC, generally by employing the self-attention mechanism with additional resource-consuming techniques to distinguish potentially discriminative regions while disregarding the rest. However, such approaches may struggle to effectively focus on truly discriminative regions due to only relying on the inherent self-attention mechanism, resulting in the classification token likely aggregating global information from less-important background patches. Moreover, due to the immense lack of the datapoints, classifiers may fail to find the most helpful inter-class distinguishing features, since other unrelated but distinctive background regions may be falsely recognised as being valuable. To this end, we introduce a simple yet effective Salient Mask-Guided Vision Transformer (SM-ViT), where the discriminability of the standard ViT`s attention maps is boosted through salient masking of potentially discriminative foreground regions. Extensive experiments demonstrate that with the standard training procedure our SM-ViT achieves state-of-the-art performance on popular FGVC benchmarks among existing ViT-based approaches while requiring fewer resources and lower input image resolution.
Transformers have dominated the field of natural language processing, and recently impacted the computer vision area. In the field of medical image analysis, Transformers have also been successfully applied to full-stack clinical applications, including image synthesis/reconstruction, registration, segmentation, detection, and diagnosis. Our paper presents both a position paper and a primer, promoting awareness and application of Transformers in the field of medical image analysis. Specifically, we first overview the core concepts of the attention mechanism built into Transformers and other basic components. Second, we give a new taxonomy of various Transformer architectures tailored for medical image applications and discuss their limitations. Within this review, we investigate key challenges revolving around the use of Transformers in different learning paradigms, improving the model efficiency, and their coupling with other techniques. We hope this review can give a comprehensive picture of Transformers to the readers in the field of medical image analysis.
Following unprecedented success on the natural language tasks, Transformers have been successfully applied to several computer vision problems, achieving state-of-the-art results and prompting researchers to reconsider the supremacy of convolutional neural networks (CNNs) as {de facto} operators. Capitalizing on these advances in computer vision, the medical imaging field has also witnessed growing interest for Transformers that can capture global context compared to CNNs with local receptive fields. Inspired from this transition, in this survey, we attempt to provide a comprehensive review of the applications of Transformers in medical imaging covering various aspects, ranging from recently proposed architectural designs to unsolved issues. Specifically, we survey the use of Transformers in medical image segmentation, detection, classification, reconstruction, synthesis, registration, clinical report generation, and other tasks. In particular, for each of these applications, we develop taxonomy, identify application-specific challenges as well as provide insights to solve them, and highlight recent trends. Further, we provide a critical discussion of the field's current state as a whole, including the identification of key challenges, open problems, and outlining promising future directions. We hope this survey will ignite further interest in the community and provide researchers with an up-to-date reference regarding applications of Transformer models in medical imaging. Finally, to cope with the rapid development in this field, we intend to regularly update the relevant latest papers and their open-source implementations at \url{//github.com/fahadshamshad/awesome-transformers-in-medical-imaging}.
Object detection with transformers (DETR) reaches competitive performance with Faster R-CNN via a transformer encoder-decoder architecture. Inspired by the great success of pre-training transformers in natural language processing, we propose a pretext task named random query patch detection to unsupervisedly pre-train DETR (UP-DETR) for object detection. Specifically, we randomly crop patches from the given image and then feed them as queries to the decoder. The model is pre-trained to detect these query patches from the original image. During the pre-training, we address two critical issues: multi-task learning and multi-query localization. (1) To trade-off multi-task learning of classification and localization in the pretext task, we freeze the CNN backbone and propose a patch feature reconstruction branch which is jointly optimized with patch detection. (2) To perform multi-query localization, we introduce UP-DETR from single-query patch and extend it to multi-query patches with object query shuffle and attention mask. In our experiments, UP-DETR significantly boosts the performance of DETR with faster convergence and higher precision on PASCAL VOC and COCO datasets. The code will be available soon.
High spectral dimensionality and the shortage of annotations make hyperspectral image (HSI) classification a challenging problem. Recent studies suggest that convolutional neural networks can learn discriminative spatial features, which play a paramount role in HSI interpretation. However, most of these methods ignore the distinctive spectral-spatial characteristic of hyperspectral data. In addition, a large amount of unlabeled data remains an unexploited gold mine for efficient data use. Therefore, we proposed an integration of generative adversarial networks (GANs) and probabilistic graphical models for HSI classification. Specifically, we used a spectral-spatial generator and a discriminator to identify land cover categories of hyperspectral cubes. Moreover, to take advantage of a large amount of unlabeled data, we adopted a conditional random field to refine the preliminary classification results generated by GANs. Experimental results obtained using two commonly studied datasets demonstrate that the proposed framework achieved encouraging classification accuracy using a small number of data for training.
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