In the relentless efforts in enhancing medical diagnostics, the integration of state-of-the-art machine learning methodologies has emerged as a promising research area. In molecular biology, there has been an explosion of data generated from multi-omics sequencing. The advent sequencing equipment can provide large number of complicated measurements per one experiment. Therefore, traditional statistical methods face challenging tasks when dealing with such high dimensional data. However, most of the information contained in these datasets is redundant or unrelated and can be effectively reduced to significantly fewer variables without losing much information. Dimensionality reduction techniques are mathematical procedures that allow for this reduction; they have largely been developed through statistics and machine learning disciplines. The other challenge in medical datasets is having an imbalanced number of samples in the classes, which leads to biased results in machine learning models. This study, focused on tackling these challenges in a neural network that incorporates autoencoder to extract latent space of the features, and Generative Adversarial Networks (GAN) to generate synthetic samples. Latent space is the reduced dimensional space that captures the meaningful features of the original data. Our model starts with feature selection to select the discriminative features before feeding them to the neural network. Then, the model predicts the outcome of cancer for different datasets. The proposed model outperformed other existing models by scoring accuracy of 95.09% for bladder cancer dataset and 88.82% for the breast cancer dataset.
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Networking：IFIP International Conferences on Networking。
Explanation：國際網絡會議。
Publisher：IFIP。
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Leveraging the computing and sensing capabilities of vehicles, vehicular federated learning (VFL) has been applied to edge training for connected vehicles. The dynamic and interconnected nature of vehicular networks presents unique opportunities to harness direct vehicle-to-vehicle (V2V) communications, enhancing VFL training efficiency. In this paper, we formulate a stochastic optimization problem to optimize the VFL training performance, considering the energy constraints and mobility of vehicles, and propose a V2V-enhanced dynamic scheduling (VEDS) algorithm to solve it. The model aggregation requirements of VFL and the limited transmission time due to mobility result in a stepwise objective function, which presents challenges in solving the problem. We thus propose a derivative-based drift-plus-penalty method to convert the long-term stochastic optimization problem to an online mixed integer nonlinear programming (MINLP) problem, and provide a theoretical analysis to bound the performance gap between the online solution and the offline optimal solution. Further analysis of the scheduling priority reduces the original problem into a set of convex optimization problems, which are efficiently solved using the interior-point method. Experimental results demonstrate that compared with the state-of-the-art benchmarks, the proposed algorithm enhances the image classification accuracy on the CIFAR-10 dataset by 3.18% and reduces the average displacement errors on the Argoverse trajectory prediction dataset by 10.21%.
Uncertainty in medical image segmentation tasks, especially inter-rater variability, arising from differences in interpretations and annotations by various experts, presents a significant challenge in achieving consistent and reliable image segmentation. This variability not only reflects the inherent complexity and subjective nature of medical image interpretation but also directly impacts the development and evaluation of automated segmentation algorithms. Accurately modeling and quantifying this variability is essential for enhancing the robustness and clinical applicability of these algorithms. We report the set-up and summarize the benchmark results of the Quantification of Uncertainties in Biomedical Image Quantification Challenge (QUBIQ), which was organized in conjunction with International Conferences on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2020 and 2021. The challenge focuses on the uncertainty quantification of medical image segmentation which considers the omnipresence of inter-rater variability in imaging datasets. The large collection of images with multi-rater annotations features various modalities such as MRI and CT; various organs such as the brain, prostate, kidney, and pancreas; and different image dimensions 2D-vs-3D. A total of 24 teams submitted different solutions to the problem, combining various baseline models, Bayesian neural networks, and ensemble model techniques. The obtained results indicate the importance of the ensemble models, as well as the need for further research to develop efficient 3D methods for uncertainty quantification methods in 3D segmentation tasks.
Quantum machine learning has demonstrated significant potential in solving practical problems, particularly in statistics-focused areas such as data science and finance. However, challenges remain in preparing and learning statistical models on a quantum processor due to issues with trainability and interpretability. In this letter, we utilize the maximum entropy principle to design a statistics-informed parameterized quantum circuit (SI-PQC) for efficiently preparing and training of quantum computational statistical models, including arbitrary distributions and their weighted mixtures. The SI-PQC features a static structure with trainable parameters, enabling in-depth optimized circuit compilation, exponential reductions in resource and time consumption, and improved trainability and interpretability for learning quantum states and classical model parameters simultaneously. As an efficient subroutine for preparing and learning in various quantum algorithms, the SI-PQC addresses the input bottleneck and facilitates the injection of prior knowledge.
This paper introduces DiffMix, a new self-supervised learning (SSL) pre-training framework that combines real and synthetic images. Unlike traditional SSL methods that predominantly use real images, DiffMix uses a variant of Stable Diffusion to replace an augmented instance of a real image, facilitating the learning of cross real-synthetic image representations. The key insight is that while SSL methods trained solely on synthetic images underperform compared to those trained on real images, a blended training approach using both real and synthetic images leads to more robust and adaptable representations. Experiments demonstrate that DiffMix enhances the SSL methods SimCLR, BarlowTwins, and DINO, across various robustness datasets and domain transfer tasks. DiffMix boosts SimCLR's accuracy on ImageNet-1K by 4.56\%. These results challenge the notion that high-quality real images are crucial for SSL pre-training by showing that lower quality synthetic images can also produce strong representations. DiffMix also reduces the need for image augmentations in SSL, offering new optimization strategies.
The randomized Kaczmarz methods are a popular and effective family of iterative methods for solving large-scale linear systems of equations, which have also been applied to linear feasibility problems. In this work, we propose a new block variant of the randomized Kaczmarz method, B-MRK, for solving linear feasibility problems defined by matrices. We show that B-MRK converges linearly in expectation to the feasible region.Furthermore, we extend the method to solve tensor linear feasibility problems defined under the tensor t-product. A tensor randomized Kaczmarz (TRK) method, TRK-L, is proposed for solving linear feasibility problems that involve mixed equality and inequality constraints. Additionally, we introduce another TRK method, TRK-LB, specifically tailored for cases where the feasible region is defined by linear equality constraints coupled with bound constraints on the variables. We show that both of the TRK methods converge linearly in expectation to the feasible region. Moreover, the effectiveness of our methods is demonstrated through numerical experiments on various Gaussian random data and applications in image deblurring.
We study interacting particle systems driven by noise, modeling phenomena such as opinion dynamics. We are interested in systems that exhibit phase transitions i.e. non-uniqueness of stationary states for the corresponding McKean-Vlasov PDE, in the mean field limit. We develop an efficient numerical scheme for identifying all steady states (both stable and unstable) of the mean field McKean-Vlasov PDE, based on a spectral Galerkin approximation combined with a deflated Newton's method to handle the multiplicity of solutions. Having found all possible equilibra, we formulate an optimal control strategy for steering the dynamics towards a chosen unstable steady state. The control is computed using iterated open-loop solvers in a receding horizon fashion. We demonstrate the effectiveness of the proposed steady state computation and stabilization methodology on several examples, including the noisy Hegselmann-Krause model for opinion dynamics and the Haken-Kelso-Bunz model from biophysics. The numerical experiments validate the ability of the approach to capture the rich self-organization landscape of these systems and to stabilize unstable configurations of interest. The proposed computational framework opens up new possibilities for understanding and controlling the collective behavior of noise-driven interacting particle systems, with potential applications in various fields such as social dynamics, biological synchronization, and collective behavior in physical and social systems.
Leveraging the development of structural causal model (SCM), researchers can establish graphical models for exploring the causal mechanisms behind machine learning techniques. As the complexity of machine learning applications rises, single-world interventionism causal analysis encounters theoretical adaptation limitations. Accordingly, cross-world counterfactual approach extends our understanding of causality beyond observed data, enabling hypothetical reasoning about alternative scenarios. However, the joint involvement of cross-world variables, encompassing counterfactual variables and real-world variables, challenges the construction of the graphical model. Twin network is a subtle attempt, establishing a symbiotic relationship, to bridge the gap between graphical modeling and the introduction of counterfactuals albeit with room for improvement in generalization. In this regard, we demonstrate the theoretical breakdowns of twin networks in certain cross-world counterfactual scenarios. To this end, we propose a novel teleporter theory to establish a general and simple graphical representation of counterfactuals, which provides criteria for determining teleporter variables to connect multiple worlds. In theoretical application, we determine that introducing the proposed teleporter theory can directly obtain the conditional independence between counterfactual variables and real-world variables from the cross-world SCM without requiring complex algebraic derivations. Accordingly, we can further identify counterfactual causal effects through cross-world symbolic derivation. We demonstrate the generality of the teleporter theory to the practical application. Adhering to the proposed theory, we build a plug-and-play module, and the effectiveness of which are substantiated by experiments on benchmarks.
The rapid development of deep learning has made a great progress in segmentation, one of the fundamental tasks of computer vision. However, the current segmentation algorithms mostly rely on the availability of pixel-level annotations, which are often expensive, tedious, and laborious. To alleviate this burden, the past years have witnessed an increasing attention in building label-efficient, deep-learning-based segmentation algorithms. This paper offers a comprehensive review on label-efficient segmentation methods. To this end, we first develop a taxonomy to organize these methods according to the supervision provided by different types of weak labels (including no supervision, coarse supervision, incomplete supervision and noisy supervision) and supplemented by the types of segmentation problems (including semantic segmentation, instance segmentation and panoptic segmentation). Next, we summarize the existing label-efficient segmentation methods from a unified perspective that discusses an important question: how to bridge the gap between weak supervision and dense prediction -- the current methods are mostly based on heuristic priors, such as cross-pixel similarity, cross-label constraint, cross-view consistency, cross-image relation, etc. Finally, we share our opinions about the future research directions for label-efficient deep segmentation.
Molecular design and synthesis planning are two critical steps in the process of molecular discovery that we propose to formulate as a single shared task of conditional synthetic pathway generation. We report an amortized approach to generate synthetic pathways as a Markov decision process conditioned on a target molecular embedding. This approach allows us to conduct synthesis planning in a bottom-up manner and design synthesizable molecules by decoding from optimized conditional codes, demonstrating the potential to solve both problems of design and synthesis simultaneously. The approach leverages neural networks to probabilistically model the synthetic trees, one reaction step at a time, according to reactivity rules encoded in a discrete action space of reaction templates. We train these networks on hundreds of thousands of artificial pathways generated from a pool of purchasable compounds and a list of expert-curated templates. We validate our method with (a) the recovery of molecules using conditional generation, (b) the identification of synthesizable structural analogs, and (c) the optimization of molecular structures given oracle functions relevant to drug discovery.
We introduce a multi-task setup of identifying and classifying entities, relations, and coreference clusters in scientific articles. We create SciERC, a dataset that includes annotations for all three tasks and develop a unified framework called Scientific Information Extractor (SciIE) for with shared span representations. The multi-task setup reduces cascading errors between tasks and leverages cross-sentence relations through coreference links. Experiments show that our multi-task model outperforms previous models in scientific information extraction without using any domain-specific features. We further show that the framework supports construction of a scientific knowledge graph, which we use to analyze information in scientific literature.
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