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The rising popularity of deep learning (DL) methods and techniques has invigorated interest in the topic of SE4DL, the application of software engineering (SE) practices on deep learning software. Despite the novel engineering challenges brought on by the data-driven and non-deterministic paradigm of DL software, little work has been invested into developing AI-targeted SE tools. On the other hand, tools tackling more general engineering issues in DL are actively used and referred to under the umbrella term of ``MLOps tools''. Furthermore, the available literature supports the utility of conventional SE tooling in DL software development. Building upon previous MSR research on tool usage in open-source software works, we identify conventional and MLOps tools adopted in popular applied DL projects that use Python as the main programming language. About 70% of the GitHub repositories mined contained at least one conventional SE tool. Software configuration management tools are the most adopted, while the opposite applies to maintenance tools. Substantially fewer MLOps tools were in use, with only 9 tools out of a sample of 80 used in at least one repository. The majority of them were open-source rather than proprietary. One of these tools, TensorBoard, was found to be adopted in about half of the repositories in our study. Consequently, the use of conventional SE tooling demonstrates its relevance to DL software. Further research is recommended on the adoption of MLOps tooling by open-source projects, focusing on the relevance of particular tool types, the development of required tools, as well as ways to promote the use of already available tools.

For multi-scale problems, the conventional physics-informed neural networks (PINNs) face some challenges in obtaining available predictions. In this paper, based on PINNs, we propose a practical deep learning framework for multi-scale problems by reconstructing the loss function and associating it with special neural network architectures. New PINN methods derived from the improved PINN framework differ from the conventional PINN method mainly in two aspects. First, the new methods use a novel loss function by modifying the standard loss function through a (grouping) regularization strategy. The regularization strategy implements a different power operation on each loss term so that all loss terms composing the loss function are of approximately the same order of magnitude, which makes all loss terms be optimized synchronously during the optimization process. Second, for the multi-frequency or high-frequency problems, in addition to using the modified loss function, new methods upgrade the neural network architecture from the common fully-connected neural network to special network architectures such as the Fourier feature architecture, and the integrated architecture developed by us. The combination of the above two techniques leads to a significant improvement in the computational accuracy of multi-scale problems. Several challenging numerical examples demonstrate the effectiveness of the proposed methods. The proposed methods not only significantly outperform the conventional PINN method in terms of computational efficiency and computational accuracy, but also compare favorably with the state-of-the-art methods in the recent literature. The improved PINN framework facilitates better application of PINNs to multi-scale problems.

Semi-supervised learning (SSL) has been a fundamental challenge in machine learning for decades. The primary family of SSL algorithms, known as pseudo-labeling, involves assigning pseudo-labels to confident unlabeled instances and incorporating them into the training set. Therefore, the selection criteria of confident instances are crucial to the success of SSL. Recently, there has been growing interest in the development of SSL methods that use dynamic or adaptive thresholds. Yet, these methods typically apply the same threshold to all samples, or use class-dependent thresholds for instances belonging to a certain class, while neglecting instance-level information. In this paper, we propose the study of instance-dependent thresholds, which has the highest degree of freedom compared with existing methods. Specifically, we devise a novel instance-dependent threshold function for all unlabeled instances by utilizing their instance-level ambiguity and the instance-dependent error rates of pseudo-labels, so instances that are more likely to have incorrect pseudo-labels will have higher thresholds. Furthermore, we demonstrate that our instance-dependent threshold function provides a bounded probabilistic guarantee for the correctness of the pseudo-labels it assigns.

Non-contrastive SSL methods like BYOL and SimSiam rely on asymmetric predictor networks to avoid representational collapse without negative samples. Yet, how predictor networks facilitate stable learning is not fully understood. While previous theoretical analyses assumed Euclidean losses, most practical implementations rely on cosine similarity. To gain further theoretical insight into non-contrastive SSL, we analytically study learning dynamics in conjunction with Euclidean and cosine similarity in the eigenspace of closed-form linear predictor networks. We show that both avoid collapse through implicit variance regularization albeit through different dynamical mechanisms. Moreover, we find that the eigenvalues act as effective learning rate multipliers and propose a family of isotropic loss functions (IsoLoss) that equalize convergence rates across eigenmodes. Empirically, IsoLoss speeds up the initial learning dynamics and increases robustness, thereby allowing us to dispense with the EMA target network typically used with non-contrastive methods. Our analysis sheds light on the variance regularization mechanisms of non-contrastive SSL and lays the theoretical grounds for crafting novel loss functions that shape the learning dynamics of the predictor's spectrum.

The processing and analysis of computed tomography (CT) imaging is important for both basic scientific development and clinical applications. In AutoCT, we provide a comprehensive pipeline that integrates an end-to-end automatic preprocessing, registration, segmentation, and quantitative analysis of 3D CT scans. The engineered pipeline enables atlas-based CT segmentation and quantification leveraging diffeomorphic transformations through efficient forward and inverse mappings. The extracted localized features from the deformation field allow for downstream statistical learning that may facilitate medical diagnostics. On a lightweight and portable software platform, AutoCT provides a new toolkit for the CT imaging community to underpin the deployment of artificial intelligence-driven applications.

Instruction-based language modeling has received significant attention in pretrained language models. However, the efficiency of instruction engineering remains low and hinders the development of instruction studies. Recent studies have focused on automating instruction generation, but they primarily aim to improve performance without considering other crucial objectives that impact instruction quality, such as instruction length and perplexity. Therefore, we propose a novel approach (i.e., InstOptima) that treats instruction generation as an evolutionary multi-objective optimization problem. In contrast to text edition-based methods, our approach utilizes a large language model (LLM) to simulate instruction operators, including mutation and crossover. Furthermore, we introduce an objective-guided mechanism for these operators, allowing the LLM to comprehend the objectives and enhance the quality of the generated instructions. Experimental results demonstrate improved fine-tuning performance and the generation of a diverse set of high-quality instructions.

We address speech enhancement based on variational autoencoders, which involves learning a speech prior distribution in the time-frequency (TF) domain. A zero-mean complex-valued Gaussian distribution is usually assumed for the generative model, where the speech information is encoded in the variance as a function of a latent variable. In contrast to this commonly used approach, we propose a weighted variance generative model, where the contribution of each spectrogram time-frame in parameter learning is weighted. We impose a Gamma prior distribution on the weights, which would effectively lead to a Student's t-distribution instead of Gaussian for speech generative modeling. We develop efficient training and speech enhancement algorithms based on the proposed generative model. Our experimental results on spectrogram auto-encoding and speech enhancement demonstrate the effectiveness and robustness of the proposed approach compared to the standard unweighted variance model.

Offline reinforcement learning (RL) aims to optimize policy using collected data without online interactions. Model-based approaches are particularly appealing for addressing offline RL challenges due to their capability to mitigate the limitations of offline data through data generation using models. Prior research has demonstrated that introducing conservatism into the model or Q-function during policy optimization can effectively alleviate the prevalent distribution drift problem in offline RL. However, the investigation into the impacts of conservatism in reward estimation is still lacking. This paper proposes a novel model-based offline RL algorithm, Conservative Reward for model-based Offline Policy optimization (CROP), which conservatively estimates the reward in model training. To achieve a conservative reward estimation, CROP simultaneously minimizes the estimation error and the reward of random actions. Theoretical analysis shows that this conservative reward mechanism leads to a conservative policy evaluation and helps mitigate distribution drift. Experiments on D4RL benchmarks showcase that the performance of CROP is comparable to the state-of-the-art baselines. Notably, CROP establishes an innovative connection between offline and online RL, highlighting that offline RL problems can be tackled by adopting online RL techniques to the empirical Markov decision process trained with a conservative reward. The source code is available with //github.com/G0K0URURI/CROP.git.

Pre-trained Language Models (PLMs) which are trained on large text corpus via self-supervised learning method, have yielded promising performance on various tasks in Natural Language Processing (NLP). However, though PLMs with huge parameters can effectively possess rich knowledge learned from massive training text and benefit downstream tasks at the fine-tuning stage, they still have some limitations such as poor reasoning ability due to the lack of external knowledge. Research has been dedicated to incorporating knowledge into PLMs to tackle these issues. In this paper, we present a comprehensive review of Knowledge-Enhanced Pre-trained Language Models (KE-PLMs) to provide a clear insight into this thriving field. We introduce appropriate taxonomies respectively for Natural Language Understanding (NLU) and Natural Language Generation (NLG) to highlight these two main tasks of NLP. For NLU, we divide the types of knowledge into four categories: linguistic knowledge, text knowledge, knowledge graph (KG), and rule knowledge. The KE-PLMs for NLG are categorized into KG-based and retrieval-based methods. Finally, we point out some promising future directions of KE-PLMs.

Recently, ensemble has been applied to deep metric learning to yield state-of-the-art results. Deep metric learning aims to learn deep neural networks for feature embeddings, distances of which satisfy given constraint. In deep metric learning, ensemble takes average of distances learned by multiple learners. As one important aspect of ensemble, the learners should be diverse in their feature embeddings. To this end, we propose an attention-based ensemble, which uses multiple attention masks, so that each learner can attend to different parts of the object. We also propose a divergence loss, which encourages diversity among the learners. The proposed method is applied to the standard benchmarks of deep metric learning and experimental results show that it outperforms the state-of-the-art methods by a significant margin on image retrieval tasks.