Data sharing is crucial for open science and reproducible research, but the legal sharing of clinical data requires the removal of protected health information from electronic health records. This process, known as de-identification, is often achieved through the use of machine learning algorithms by many commercial and open-source systems. While these systems have shown compelling results on average, the variation in their performance across different demographic groups has not been thoroughly examined. In this work, we investigate the bias of de-identification systems on names in clinical notes via a large-scale empirical analysis. To achieve this, we create 16 name sets that vary along four demographic dimensions: gender, race, name popularity, and the decade of popularity. We insert these names into 100 manually curated clinical templates and evaluate the performance of nine public and private de-identification methods. Our findings reveal that there are statistically significant performance gaps along a majority of the demographic dimensions in most methods. We further illustrate that de-identification quality is affected by polysemy in names, gender context, and clinical note characteristics. To mitigate the identified gaps, we propose a simple and method-agnostic solution by fine-tuning de-identification methods with clinical context and diverse names. Overall, it is imperative to address the bias in existing methods immediately so that downstream stakeholders can build high-quality systems to serve all demographic parties fairly.
相關內容
Generative Adversarial Networks (GANs) have demonstrated their ability to generate synthetic samples that match a target distribution. However, from a privacy perspective, using GANs as a proxy for data sharing is not a safe solution, as they tend to embed near-duplicates of real samples in the latent space. Recent works, inspired by k-anonymity principles, address this issue through sample aggregation in the latent space, with the drawback of reducing the dataset by a factor of k. Our work aims to mitigate this problem by proposing a latent space navigation strategy able to generate diverse synthetic samples that may support effective training of deep models, while addressing privacy concerns in a principled way. Our approach leverages an auxiliary identity classifier as a guide to non-linearly walk between points in the latent space, minimizing the risk of collision with near-duplicates of real samples. We empirically demonstrate that, given any random pair of points in the latent space, our walking strategy is safer than linear interpolation. We then test our path-finding strategy combined to k-same methods and demonstrate, on two benchmarks for tuberculosis and diabetic retinopathy classification, that training a model using samples generated by our approach mitigate drops in performance, while keeping privacy preservation.
We investigate performance disparities in deep classifiers. We find that the ability of classifiers to separate individuals into subgroups varies substantially across medical imaging modalities and protected characteristics; crucially, we show that this property is predictive of algorithmic bias. Through theoretical analysis and extensive empirical evaluation, we find a relationship between subgroup separability, subgroup disparities, and performance degradation when models are trained on data with systematic bias such as underdiagnosis. Our findings shed new light on the question of how models become biased, providing important insights for the development of fair medical imaging AI.
Entity matching (EM) is a challenging problem studied by different communities for over half a century. Algorithmic fairness has also become a timely topic to address machine bias and its societal impacts. Despite extensive research on these two topics, little attention has been paid to the fairness of entity matching. Towards addressing this gap, we perform an extensive experimental evaluation of a variety of EM techniques in this paper. We generated two social datasets from publicly available datasets for the purpose of auditing EM through the lens of fairness. Our findings underscore potential unfairness under two common conditions in real-world societies: (i) when some demographic groups are overrepresented, and (ii) when names are more similar in some groups compared to others. Among our many findings, it is noteworthy to mention that while various fairness definitions are valuable for different settings, due to EM's class imbalance nature, measures such as positive predictive value parity and true positive rate parity are, in general, more capable of revealing EM unfairness.
Deep learning has received increasing interests in face recognition recently. Large quantities of deep learning methods have been proposed to handle various problems appeared in face recognition. Quite a lot deep methods claimed that they have gained or even surpassed human-level face verification performance in certain databases. As we know, face image quality poses a great challenge to traditional face recognition methods, e.g. model-driven methods with hand-crafted features. However, a little research focus on the impact of face image quality on deep learning methods, and even human performance. Therefore, we raise a question: Is face image quality still one of the challenges for deep learning based face recognition, especially in unconstrained condition. Based on this, we further investigate this problem on human level. In this paper, we partition face images into three different quality sets to evaluate the performance of deep learning methods on cross-quality face images in the wild, and then design a human face verification experiment on these cross-quality data. The result indicates that quality issue still needs to be studied thoroughly in deep learning, human own better capability in building the relations between different face images with large quality gaps, and saying deep learning method surpasses human-level is too optimistic.
Recent breakthroughs in synthetic data generation approaches made it possible to produce highly photorealistic images which are hardly distinguishable from real ones. Furthermore, synthetic generation pipelines have the potential to generate an unlimited number of images. The combination of high photorealism and scale turn synthetic data into a promising candidate for improving various machine learning (ML) pipelines. Thus far, a large body of research in this field has focused on using synthetic images for training, by augmenting and enlarging training data. In contrast to using synthetic data for training, in this work we explore whether synthetic data can be beneficial for model selection. Considering the task of image classification, we demonstrate that when data is scarce, synthetic data can be used to replace the held out validation set, thus allowing to train on a larger dataset. We also introduce a novel method to calibrate the synthetic error estimation to fit that of the real domain. We show that such calibration significantly improves the usefulness of synthetic data for model selection.
Traditional Federated Learning (FL) follows a server-domincated cooperation paradigm which narrows the application scenarios of FL and decreases the enthusiasm of data holders to participate. To fully unleash the potential of FL, we advocate rethinking the design of current FL frameworks and extending it to a more generalized concept: Open Federated Learning Platforms. We propose two reciprocal cooperation frameworks for FL to achieve this: query-based FL and contract-based FL. In this survey, we conduct a comprehensive review of the feasibility of constructing an open FL platform from both technical and legal perspectives. We begin by reviewing the definition of FL and summarizing its inherent limitations, including server-client coupling, low model reusability, and non-public. In the query-based FL platform, which is an open model sharing and reusing platform empowered by the community for model mining, we explore a wide range of valuable topics, including the availability of up-to-date model repositories for model querying, legal compliance analysis between different model licenses, and copyright issues and intellectual property protection in model reusing. In particular, we introduce a novel taxonomy to streamline the analysis of model license compatibility in FL studies that involve batch model reusing methods, including combination, amalgamation, distillation, and generation. This taxonomy provides a systematic framework for identifying the corresponding clauses of licenses and facilitates the identification of potential legal implications and restrictions when reusing models. Through this survey, we uncover the the current dilemmas faced by FL and advocate for the development of sustainable open FL platforms. We aim to provide guidance for establishing such platforms in the future, while identifying potential problems and challenges that need to be addressed.
Imbalanced data poses a significant challenge in classification as model performance is affected by insufficient learning from minority classes. Balancing methods are often used to address this problem. However, such techniques can lead to problems such as overfitting or loss of information. This study addresses a more challenging aspect of balancing methods - their impact on model behavior. To capture these changes, Explainable Artificial Intelligence tools are used to compare models trained on datasets before and after balancing. In addition to the variable importance method, this study uses the partial dependence profile and accumulated local effects techniques. Real and simulated datasets are tested, and an open-source Python package edgaro is developed to facilitate this analysis. The results obtained show significant changes in model behavior due to balancing methods, which can lead to biased models toward a balanced distribution. These findings confirm that balancing analysis should go beyond model performance comparisons to achieve higher reliability of machine learning models. Therefore, we propose a new method performance gain plot for informed data balancing strategy to make an optimal selection of balancing method by analyzing the measure of change in model behavior versus performance gain.
The rapid advancements in machine learning, graphics processing technologies and availability of medical imaging data has led to a rapid increase in use of machine learning models in the medical domain. This was exacerbated by the rapid advancements in convolutional neural network (CNN) based architectures, which were adopted by the medical imaging community to assist clinicians in disease diagnosis. Since the grand success of AlexNet in 2012, CNNs have been increasingly used in medical image analysis to improve the efficiency of human clinicians. In recent years, three-dimensional (3D) CNNs have been employed for analysis of medical images. In this paper, we trace the history of how the 3D CNN was developed from its machine learning roots, brief mathematical description of 3D CNN and the preprocessing steps required for medical images before feeding them to 3D CNNs. We review the significant research in the field of 3D medical imaging analysis using 3D CNNs (and its variants) in different medical areas such as classification, segmentation, detection, and localization. We conclude by discussing the challenges associated with the use of 3D CNNs in the medical imaging domain (and the use of deep learning models, in general) and possible future trends in the field.
Causal inference is a critical research topic across many domains, such as statistics, computer science, education, public policy and economics, for decades. Nowadays, estimating causal effect from observational data has become an appealing research direction owing to the large amount of available data and low budget requirement, compared with randomized controlled trials. Embraced with the rapidly developed machine learning area, various causal effect estimation methods for observational data have sprung up. In this survey, we provide a comprehensive review of causal inference methods under the potential outcome framework, one of the well known causal inference framework. The methods are divided into two categories depending on whether they require all three assumptions of the potential outcome framework or not. For each category, both the traditional statistical methods and the recent machine learning enhanced methods are discussed and compared. The plausible applications of these methods are also presented, including the applications in advertising, recommendation, medicine and so on. Moreover, the commonly used benchmark datasets as well as the open-source codes are also summarized, which facilitate researchers and practitioners to explore, evaluate and apply the causal inference methods.
Clinical Named Entity Recognition (CNER) aims to identify and classify clinical terms such as diseases, symptoms, treatments, exams, and body parts in electronic health records, which is a fundamental and crucial task for clinical and translational research. In recent years, deep neural networks have achieved significant success in named entity recognition and many other Natural Language Processing (NLP) tasks. Most of these algorithms are trained end to end, and can automatically learn features from large scale labeled datasets. However, these data-driven methods typically lack the capability of processing rare or unseen entities. Previous statistical methods and feature engineering practice have demonstrated that human knowledge can provide valuable information for handling rare and unseen cases. In this paper, we address the problem by incorporating dictionaries into deep neural networks for the Chinese CNER task. Two different architectures that extend the Bi-directional Long Short-Term Memory (Bi-LSTM) neural network and five different feature representation schemes are proposed to handle the task. Computational results on the CCKS-2017 Task 2 benchmark dataset show that the proposed method achieves the highly competitive performance compared with the state-of-the-art deep learning methods.
注冊地址： 北京市海淀區羊坊店路18號2幢3層301-191