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Molecular discovery, when formulated as an optimization problem, presents significant computational challenges because optimization objectives can be non-differentiable. Evolutionary Algorithms (EAs), often used to optimize black-box objectives in molecular discovery, traverse chemical space by performing random mutations and crossovers, leading to a large number of expensive objective evaluations. In this work, we ameliorate this shortcoming by incorporating chemistry-aware Large Language Models (LLMs) into EAs. Namely, we redesign crossover and mutation operations in EAs using LLMs trained on large corpora of chemical information. We perform extensive empirical studies on both commercial and open-source models on multiple tasks involving property optimization, molecular rediscovery, and structure-based drug design, demonstrating that the joint usage of LLMs with EAs yields superior performance over all baseline models across single- and multi-objective settings. We demonstrate that our algorithm improves both the quality of the final solution and convergence speed, thereby reducing the number of required objective evaluations. Our code is available at //github.com/zoom-wang112358/MOLLEO

Current approaches in paraphrase generation and detection heavily rely on a single general similarity score, ignoring the intricate linguistic properties of language. This paper introduces two new tasks to address this shortcoming by considering paraphrase types - specific linguistic perturbations at particular text positions. We name these tasks Paraphrase Type Generation and Paraphrase Type Detection. Our results suggest that while current techniques perform well in a binary classification scenario, i.e., paraphrased or not, the inclusion of fine-grained paraphrase types poses a significant challenge. While most approaches are good at generating and detecting general semantic similar content, they fail to understand the intrinsic linguistic variables they manipulate. Models trained in generating and identifying paraphrase types also show improvements in tasks without them. In addition, scaling these models further improves their ability to understand paraphrase types. We believe paraphrase types can unlock a new paradigm for developing paraphrase models and solving tasks in the future.

An inference procedure is proposed to provide consistent estimators of parameters in a modal regression model with a covariate prone to measurement error. A score-based diagnostic tool exploiting parametric bootstrap is developed to assess adequacy of parametric assumptions imposed on the regression model. The proposed estimation method and diagnostic tool are applied to synthetic data generated from simulation experiments and data from real-world applications to demonstrate their implementation and performance. These empirical examples illustrate the importance of adequately accounting for measurement error in the error-prone covariate when inferring the association between a response and covariates based on a modal regression model that is especially suitable for skewed and heavy-tailed response data.

The burgeoning field of on-device AI communication, where devices exchange information directly through embedded foundation models, such as language models (LMs), requires robust, efficient, and generalizable communication frameworks. However, integrating these frameworks with existing wireless systems and effectively managing noise and bit errors pose significant challenges. In this work, we introduce a practical ondevice AI communication framework, integrated with physical layer (PHY) communication functions, demonstrated through its performance on a link-level simulator. Our framework incorporates end-to-end training with channel noise to enhance resilience, incorporates vector quantized variational autoencoders (VQ-VAE) for efficient and robust communication, and utilizes pre-trained encoder-decoder transformers for improved generalization capabilities. Simulations, across various communication scenarios, reveal that our framework achieves a 50% reduction in transmission size while demonstrating substantial generalization ability and noise robustness under standardized 3GPP channel models.

We propose a novel approach to mitigate biases in computer vision models by utilizing counterfactual generation and fine-tuning. While counterfactuals have been used to analyze and address biases in DNN models, the counterfactuals themselves are often generated from biased generative models, which can introduce additional biases or spurious correlations. To address this issue, we propose using adversarial images, that is images that deceive a deep neural network but not humans, as counterfactuals for fair model training. Our approach leverages a curriculum learning framework combined with a fine-grained adversarial loss to fine-tune the model using adversarial examples. By incorporating adversarial images into the training data, we aim to prevent biases from propagating through the pipeline. We validate our approach through both qualitative and quantitative assessments, demonstrating improved bias mitigation and accuracy compared to existing methods. Qualitatively, our results indicate that post-training, the decisions made by the model are less dependent on the sensitive attribute and our model better disentangles the relationship between sensitive attributes and classification variables.

We discuss the advantages of a spline-based freeform shape optimization approach using the example of a multi-tapered coaxial balun connected to a spiral antenna. The underlying simulation model is given in terms of a recently proposed isogeometric integral equation formulation, which can be interpreted as a high-order generalization of the partial element equivalent circuit method. We demonstrate a significant improvement in the optimized design, i.e., a reduction in the magnitude of the scattering parameter over a wide frequency range.

Randomized subspace approximation with "matrix sketching" is an effective approach for constructing approximate partial singular value decompositions (SVDs) of large matrices. The performance of such techniques has been extensively analyzed, and very precise estimates on the distribution of the residual errors have been derived. However, our understanding of the accuracy of the computed singular vectors (measured in terms of the canonical angles between the spaces spanned by the exact and the computed singular vectors, respectively) remains relatively limited. In this work, we present practical bounds and estimates for canonical angles of randomized subspace approximation that can be computed efficiently either a priori or a posteriori, without assuming prior knowledge of the true singular subspaces. Under moderate oversampling in the randomized SVD, our prior probabilistic bounds are asymptotically tight and can be computed efficiently, while bringing a clear insight into the balance between oversampling and power iterations given a fixed budget on the number of matrix-vector multiplications. The numerical experiments demonstrate the empirical effectiveness of these canonical angle bounds and estimates on different matrices under various algorithmic choices for the randomized SVD.

Molecular design and synthesis planning are two critical steps in the process of molecular discovery that we propose to formulate as a single shared task of conditional synthetic pathway generation. We report an amortized approach to generate synthetic pathways as a Markov decision process conditioned on a target molecular embedding. This approach allows us to conduct synthesis planning in a bottom-up manner and design synthesizable molecules by decoding from optimized conditional codes, demonstrating the potential to solve both problems of design and synthesis simultaneously. The approach leverages neural networks to probabilistically model the synthetic trees, one reaction step at a time, according to reactivity rules encoded in a discrete action space of reaction templates. We train these networks on hundreds of thousands of artificial pathways generated from a pool of purchasable compounds and a list of expert-curated templates. We validate our method with (a) the recovery of molecules using conditional generation, (b) the identification of synthesizable structural analogs, and (c) the optimization of molecular structures given oracle functions relevant to drug discovery.

We advocate the use of implicit fields for learning generative models of shapes and introduce an implicit field decoder for shape generation, aimed at improving the visual quality of the generated shapes. An implicit field assigns a value to each point in 3D space, so that a shape can be extracted as an iso-surface. Our implicit field decoder is trained to perform this assignment by means of a binary classifier. Specifically, it takes a point coordinate, along with a feature vector encoding a shape, and outputs a value which indicates whether the point is outside the shape or not. By replacing conventional decoders by our decoder for representation learning and generative modeling of shapes, we demonstrate superior results for tasks such as shape autoencoding, generation, interpolation, and single-view 3D reconstruction, particularly in terms of visual quality.

We introduce a generic framework that reduces the computational cost of object detection while retaining accuracy for scenarios where objects with varied sizes appear in high resolution images. Detection progresses in a coarse-to-fine manner, first on a down-sampled version of the image and then on a sequence of higher resolution regions identified as likely to improve the detection accuracy. Built upon reinforcement learning, our approach consists of a model (R-net) that uses coarse detection results to predict the potential accuracy gain for analyzing a region at a higher resolution and another model (Q-net) that sequentially selects regions to zoom in. Experiments on the Caltech Pedestrians dataset show that our approach reduces the number of processed pixels by over 50% without a drop in detection accuracy. The merits of our approach become more significant on a high resolution test set collected from YFCC100M dataset, where our approach maintains high detection performance while reducing the number of processed pixels by about 70% and the detection time by over 50%.