This paper proposes a novel variant of GFlowNet, genetic-guided GFlowNet (Genetic GFN), which integrates an iterative genetic search into GFlowNet. Genetic search effectively guides the GFlowNet to high-rewarded regions, addressing global over-exploration that results in training inefficiency and exploring limited regions. In addition, training strategies, such as rank-based replay training and unsupervised maximum likelihood pre-training, are further introduced to improve the sample efficiency of Genetic GFN. The proposed method shows a state-of-the-art score of 16.213, significantly outperforming the reported best score in the benchmark of 15.185, in practical molecular optimization (PMO), which is an official benchmark for sample-efficient molecular optimization. Remarkably, ours exceeds all baselines, including reinforcement learning, Bayesian optimization, generative models, GFlowNets, and genetic algorithms, in 14 out of 23 tasks.
This paper introduces a novel annotation framework for the fine-grained modeling of Noun Phrases' (NPs) genericity in natural language. The framework is designed to be simple and intuitive, making it accessible to non-expert annotators and suitable for crowd-sourced tasks. Drawing from theoretical and cognitive literature on genericity, this framework is grounded in established linguistic theory. Through a pilot study, we created a small but crucial annotated dataset of 324 sentences, serving as a foundation for future research. To validate our approach, we conducted an evaluation comparing our continuous annotations with existing binary annotations on the same dataset, demonstrating the framework's effectiveness in capturing nuanced aspects of genericity. Our work offers a practical resource for linguists, providing a first annotated dataset and an annotation scheme designed to build real-language datasets that can be used in studies on the semantics of genericity, and NLP practitioners, contributing to the development of commonsense knowledge repositories valuable in enhancing various NLP applications.
The year 2023 marked a significant surge in the exploration of applying large language model (LLM) chatbots, notably ChatGPT, across various disciplines. We surveyed the applications of ChatGPT in various sectors of bioinformatics and biomedical informatics throughout the year, covering omics, genetics, biomedical text mining, drug discovery, biomedical image understanding, bioinformatics programming, and bioinformatics education. Our survey delineates the current strengths and limitations of this chatbot in bioinformatics and offers insights into potential avenues for future development.
Retrieval-Augmented Large Language Models (LLMs), which incorporate the non-parametric knowledge from external knowledge bases into LLMs, have emerged as a promising approach to enhancing response accuracy in several tasks, such as Question-Answering (QA). However, even though there are various approaches dealing with queries of different complexities, they either handle simple queries with unnecessary computational overhead or fail to adequately address complex multi-step queries; yet, not all user requests fall into only one of the simple or complex categories. In this work, we propose a novel adaptive QA framework, that can dynamically select the most suitable strategy for (retrieval-augmented) LLMs from the simplest to the most sophisticated ones based on the query complexity. Also, this selection process is operationalized with a classifier, which is a smaller LM trained to predict the complexity level of incoming queries with automatically collected labels, obtained from actual predicted outcomes of models and inherent inductive biases in datasets. This approach offers a balanced strategy, seamlessly adapting between the iterative and single-step retrieval-augmented LLMs, as well as the no-retrieval methods, in response to a range of query complexities. We validate our model on a set of open-domain QA datasets, covering multiple query complexities, and show that ours enhances the overall efficiency and accuracy of QA systems, compared to relevant baselines including the adaptive retrieval approaches. Code is available at: //github.com/starsuzi/Adaptive-RAG.
We present the HPLT (High Performance Language Technologies) language resources, a new massive multilingual dataset including both monolingual and bilingual corpora extracted from CommonCrawl and previously unused web crawls from the Internet Archive. We describe our methods for data acquisition, management and processing of large corpora, which rely on open-source software tools and high-performance computing. Our monolingual collection focuses on low- to medium-resourced languages and covers 75 languages and a total of ~5.6 trillion word tokens de-duplicated on the document level. Our English-centric parallel corpus is derived from its monolingual counterpart and covers 18 language pairs and more than 96 million aligned sentence pairs with roughly 1.4 billion English tokens. The HPLT language resources are one of the largest open text corpora ever released, providing a great resource for language modeling and machine translation training. We publicly release the corpora, the software, and the tools used in this work.
In this paper, we propose Describe-and-Dissect (DnD), a novel method to describe the roles of hidden neurons in vision networks. DnD utilizes recent advancements in multimodal deep learning to produce complex natural language descriptions, without the need for labeled training data or a predefined set of concepts to choose from. Additionally, DnD is training-free, meaning we don't train any new models and can easily leverage more capable general purpose models in the future. We have conducted extensive qualitative and quantitative analysis to show that DnD outperforms prior work by providing higher quality neuron descriptions. Specifically, our method on average provides the highest quality labels and is more than 2 times as likely to be selected as the best explanation for a neuron than the best baseline.
Data Augmentation (DA) has emerged as an indispensable strategy in Time Series Classification (TSC), primarily due to its capacity to amplify training samples, thereby bolstering model robustness, diversifying datasets, and curtailing overfitting. However, the current landscape of DA in TSC is plagued with fragmented literature reviews, nebulous methodological taxonomies, inadequate evaluative measures, and a dearth of accessible, user-oriented tools. In light of these challenges, this study embarks on an exhaustive dissection of DA methodologies within the TSC realm. Our initial approach involved an extensive literature review spanning a decade, revealing that contemporary surveys scarcely capture the breadth of advancements in DA for TSC, prompting us to meticulously analyze over 100 scholarly articles to distill more than 60 unique DA techniques. This rigorous analysis precipitated the formulation of a novel taxonomy, purpose-built for the intricacies of DA in TSC, categorizing techniques into five principal echelons: Transformation-Based, Pattern-Based, Generative, Decomposition-Based, and Automated Data Augmentation. Our taxonomy promises to serve as a robust navigational aid for scholars, offering clarity and direction in method selection. Addressing the conspicuous absence of holistic evaluations for prevalent DA techniques, we executed an all-encompassing empirical assessment, wherein upwards of 15 DA strategies were subjected to scrutiny across 8 UCR time-series datasets, employing ResNet and a multi-faceted evaluation paradigm encompassing Accuracy, Method Ranking, and Residual Analysis, yielding a benchmark accuracy of 88.94 +- 11.83%. Our investigation underscored the inconsistent efficacies of DA techniques, with...
This paper works on non-autoregressive automatic speech recognition. A unimodal aggregation (UMA) is proposed to segment and integrate the feature frames that belong to the same text token, and thus to learn better feature representations for text tokens. The frame-wise features and weights are both derived from an encoder. Then, the feature frames with unimodal weights are integrated and further processed by a decoder. Connectionist temporal classification (CTC) loss is applied for training. Compared to the regular CTC, the proposed method learns better feature representations and shortens the sequence length, resulting in lower recognition error and computational complexity. Experiments on three Mandarin datasets show that UMA demonstrates superior or comparable performance to other advanced non-autoregressive methods, such as self-conditioned CTC. Moreover, by integrating self-conditioned CTC into the proposed framework, the performance can be further noticeably improved.
Transformer-based pretrained language models (T-PTLMs) have achieved great success in almost every NLP task. The evolution of these models started with GPT and BERT. These models are built on the top of transformers, self-supervised learning and transfer learning. Transformed-based PTLMs learn universal language representations from large volumes of text data using self-supervised learning and transfer this knowledge to downstream tasks. These models provide good background knowledge to downstream tasks which avoids training of downstream models from scratch. In this comprehensive survey paper, we initially give a brief overview of self-supervised learning. Next, we explain various core concepts like pretraining, pretraining methods, pretraining tasks, embeddings and downstream adaptation methods. Next, we present a new taxonomy of T-PTLMs and then give brief overview of various benchmarks including both intrinsic and extrinsic. We present a summary of various useful libraries to work with T-PTLMs. Finally, we highlight some of the future research directions which will further improve these models. We strongly believe that this comprehensive survey paper will serve as a good reference to learn the core concepts as well as to stay updated with the recent happenings in T-PTLMs.
We present MMKG, a collection of three knowledge graphs that contain both numerical features and (links to) images for all entities as well as entity alignments between pairs of KGs. Therefore, multi-relational link prediction and entity matching communities can benefit from this resource. We believe this data set has the potential to facilitate the development of novel multi-modal learning approaches for knowledge graphs.We validate the utility ofMMKG in the sameAs link prediction task with an extensive set of experiments. These experiments show that the task at hand benefits from learning of multiple feature types.
With the advent of deep neural networks, learning-based approaches for 3D reconstruction have gained popularity. However, unlike for images, in 3D there is no canonical representation which is both computationally and memory efficient yet allows for representing high-resolution geometry of arbitrary topology. Many of the state-of-the-art learning-based 3D reconstruction approaches can hence only represent very coarse 3D geometry or are limited to a restricted domain. In this paper, we propose occupancy networks, a new representation for learning-based 3D reconstruction methods. Occupancy networks implicitly represent the 3D surface as the continuous decision boundary of a deep neural network classifier. In contrast to existing approaches, our representation encodes a description of the 3D output at infinite resolution without excessive memory footprint. We validate that our representation can efficiently encode 3D structure and can be inferred from various kinds of input. Our experiments demonstrate competitive results, both qualitatively and quantitatively, for the challenging tasks of 3D reconstruction from single images, noisy point clouds and coarse discrete voxel grids. We believe that occupancy networks will become a useful tool in a wide variety of learning-based 3D tasks.