Great progress has been made in automatic medical image segmentation due to powerful deep representation learning. The influence of transformer has led to research into its variants, and large-scale replacement of traditional CNN modules. However, such trend often overlooks the intrinsic feature extraction capabilities of the transformer and potential refinements to both the model and the transformer module through minor adjustments. This study proposes a novel deep medical image segmentation framework, called DA-TransUNet, aiming to introduce the Transformer and dual attention block into the encoder and decoder of the traditional U-shaped architecture. Unlike prior transformer-based solutions, our DA-TransUNet utilizes attention mechanism of transformer and multifaceted feature extraction of DA-Block, which can efficiently combine global, local, and multi-scale features to enhance medical image segmentation. Meanwhile, experimental results show that a dual attention block is added before the Transformer layer to facilitate feature extraction in the U-net structure. Furthermore, incorporating dual attention blocks in skip connections can enhance feature transfer to the decoder, thereby improving image segmentation performance. Experimental results across various benchmark of medical image segmentation reveal that DA-TransUNet significantly outperforms the state-of-the-art methods. The codes and parameters of our model will be publicly available at //github.com/SUN-1024/DA-TransUnet.
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Despite substantial progress, all-in-one image restoration (IR) grapples with persistent challenges in handling intricate real-world degradations. This paper introduces MPerceiver: a novel multimodal prompt learning approach that harnesses Stable Diffusion (SD) priors to enhance adaptiveness, generalizability and fidelity for all-in-one image restoration. Specifically, we develop a dual-branch module to master two types of SD prompts: textual for holistic representation and visual for multiscale detail representation. Both prompts are dynamically adjusted by degradation predictions from the CLIP image encoder, enabling adaptive responses to diverse unknown degradations. Moreover, a plug-in detail refinement module improves restoration fidelity via direct encoder-to-decoder information transformation. To assess our method, MPerceiver is trained on 9 tasks for all-in-one IR and outperforms state-of-the-art task-specific methods across most tasks. Post multitask pre-training, MPerceiver attains a generalized representation in low-level vision, exhibiting remarkable zero-shot and few-shot capabilities in unseen tasks. Extensive experiments on 16 IR tasks and 26 benchmarks underscore the superiority of MPerceiver in terms of adaptiveness, generalizability and fidelity.
Large language models pretrained on a huge amount of data capture rich knowledge and information in the training data. The ability of data memorization and regurgitation in pretrained language models, revealed in previous studies, brings the risk of data leakage. In order to effectively reduce these risks, we propose a framework DEPN to Detect and Edit Privacy Neurons in pretrained language models, partially inspired by knowledge neurons and model editing. In DEPN, we introduce a novel method, termed as privacy neuron detector, to locate neurons associated with private information, and then edit these detected privacy neurons by setting their activations to zero. Furthermore, we propose a privacy neuron aggregator dememorize private information in a batch processing manner. Experimental results show that our method can significantly and efficiently reduce the exposure of private data leakage without deteriorating the performance of the model. Additionally, we empirically demonstrate the relationship between model memorization and privacy neurons, from multiple perspectives, including model size, training time, prompts, privacy neuron distribution, illustrating the robustness of our approach.
Text-to-image (T2I) synthesis has recently achieved significant advancements. However, challenges remain in the model's compositionality, which is the ability to create new combinations from known components. We introduce Winoground-T2I, a benchmark designed to evaluate the compositionality of T2I models. This benchmark includes 11K complex, high-quality contrastive sentence pairs spanning 20 categories. These contrastive sentence pairs with subtle differences enable fine-grained evaluations of T2I synthesis models. Additionally, to address the inconsistency across different metrics, we propose a strategy that evaluates the reliability of various metrics by using comparative sentence pairs. We use Winoground-T2I with a dual objective: to evaluate the performance of T2I models and the metrics used for their evaluation. Finally, we provide insights into the strengths and weaknesses of these metrics and the capabilities of current T2I models in tackling challenges across a range of complex compositional categories. Our benchmark is publicly available at //github.com/zhuxiangru/Winoground-T2I .
Interpretable deep learning models have received widespread attention in the field of image recognition. Due to the unique multi-instance learning of medical images and the difficulty in identifying decision-making regions, many interpretability models that have been proposed still have problems of insufficient accuracy and interpretability in medical image disease diagnosis. To solve these problems, we propose feature-driven inference network (FeaInfNet). Our first key innovation involves proposing a feature-based network reasoning structure, which is applied to FeaInfNet. The network of this structure compares the similarity of each sub-region image patch with the disease templates and normal templates that may appear in the region, and finally combines the comparison of each sub-region to make the final diagnosis. It simulates the diagnosis process of doctors to make the model interpretable in the reasoning process, while avoiding the misleading caused by the participation of normal areas in reasoning. Secondly, we propose local feature masks (LFM) to extract feature vectors in order to provide global information for these vectors, thus enhancing the expressive ability of the FeaInfNet. Finally, we propose adaptive dynamic masks (Adaptive-DM) to interpret feature vectors and prototypes into human-understandable image patches to provide accurate visual interpretation. We conducted qualitative and quantitative experiments on multiple publicly available medical datasets, including RSNA, iChallenge-PM, Covid-19, ChinaCXRSet, and MontgomerySet. The results of our experiments validate that our method achieves state-of-the-art performance in terms of classification accuracy and interpretability compared to baseline methods in medical image diagnosis. Additional ablation studies verify the effectiveness of each of our proposed components.
Speech-driven 3D facial animation has been an attractive task in both academia and industry. Traditional methods mostly focus on learning a deterministic mapping from speech to animation. Recent approaches start to consider the non-deterministic fact of speech-driven 3D face animation and employ the diffusion model for the task. However, personalizing facial animation and accelerating animation generation are still two major limitations of existing diffusion-based methods. To address the above limitations, we propose DiffusionTalker, a diffusion-based method that utilizes contrastive learning to personalize 3D facial animation and knowledge distillation to accelerate 3D animation generation. Specifically, to enable personalization, we introduce a learnable talking identity to aggregate knowledge in audio sequences. The proposed identity embeddings extract customized facial cues across different people in a contrastive learning manner. During inference, users can obtain personalized facial animation based on input audio, reflecting a specific talking style. With a trained diffusion model with hundreds of steps, we distill it into a lightweight model with 8 steps for acceleration. Extensive experiments are conducted to demonstrate that our method outperforms state-of-the-art methods. The code will be released.
Self-supervised learning (SSL) has recently achieved impressive performance on various time series tasks. The most prominent advantage of SSL is that it reduces the dependence on labeled data. Based on the pre-training and fine-tuning strategy, even a small amount of labeled data can achieve high performance. Compared with many published self-supervised surveys on computer vision and natural language processing, a comprehensive survey for time series SSL is still missing. To fill this gap, we review current state-of-the-art SSL methods for time series data in this article. To this end, we first comprehensively review existing surveys related to SSL and time series, and then provide a new taxonomy of existing time series SSL methods. We summarize these methods into three categories: generative-based, contrastive-based, and adversarial-based. All methods can be further divided into ten subcategories. To facilitate the experiments and validation of time series SSL methods, we also summarize datasets commonly used in time series forecasting, classification, anomaly detection, and clustering tasks. Finally, we present the future directions of SSL for time series analysis.
Medical image segmentation is a fundamental and critical step in many image-guided clinical approaches. Recent success of deep learning-based segmentation methods usually relies on a large amount of labeled data, which is particularly difficult and costly to obtain especially in the medical imaging domain where only experts can provide reliable and accurate annotations. Semi-supervised learning has emerged as an appealing strategy and been widely applied to medical image segmentation tasks to train deep models with limited annotations. In this paper, we present a comprehensive review of recently proposed semi-supervised learning methods for medical image segmentation and summarized both the technical novelties and empirical results. Furthermore, we analyze and discuss the limitations and several unsolved problems of existing approaches. We hope this review could inspire the research community to explore solutions for this challenge and further promote the developments in medical image segmentation field.
The problem of answering questions using knowledge from pre-trained language models (LMs) and knowledge graphs (KGs) presents two challenges: given a QA context (question and answer choice), methods need to (i) identify relevant knowledge from large KGs, and (ii) perform joint reasoning over the QA context and KG. In this work, we propose a new model, QA-GNN, which addresses the above challenges through two key innovations: (i) relevance scoring, where we use LMs to estimate the importance of KG nodes relative to the given QA context, and (ii) joint reasoning, where we connect the QA context and KG to form a joint graph, and mutually update their representations through graph neural networks. We evaluate QA-GNN on the CommonsenseQA and OpenBookQA datasets, and show its improvement over existing LM and LM+KG models, as well as its capability to perform interpretable and structured reasoning, e.g., correctly handling negation in questions.
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.
Graph convolutional network (GCN) has been successfully applied to many graph-based applications; however, training a large-scale GCN remains challenging. Current SGD-based algorithms suffer from either a high computational cost that exponentially grows with number of GCN layers, or a large space requirement for keeping the entire graph and the embedding of each node in memory. In this paper, we propose Cluster-GCN, a novel GCN algorithm that is suitable for SGD-based training by exploiting the graph clustering structure. Cluster-GCN works as the following: at each step, it samples a block of nodes that associate with a dense subgraph identified by a graph clustering algorithm, and restricts the neighborhood search within this subgraph. This simple but effective strategy leads to significantly improved memory and computational efficiency while being able to achieve comparable test accuracy with previous algorithms. To test the scalability of our algorithm, we create a new Amazon2M data with 2 million nodes and 61 million edges which is more than 5 times larger than the previous largest publicly available dataset (Reddit). For training a 3-layer GCN on this data, Cluster-GCN is faster than the previous state-of-the-art VR-GCN (1523 seconds vs 1961 seconds) and using much less memory (2.2GB vs 11.2GB). Furthermore, for training 4 layer GCN on this data, our algorithm can finish in around 36 minutes while all the existing GCN training algorithms fail to train due to the out-of-memory issue. Furthermore, Cluster-GCN allows us to train much deeper GCN without much time and memory overhead, which leads to improved prediction accuracy---using a 5-layer Cluster-GCN, we achieve state-of-the-art test F1 score 99.36 on the PPI dataset, while the previous best result was 98.71 by [16]. Our codes are publicly available at //github.com/google-research/google-research/tree/master/cluster_gcn.
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