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We consider the general class of time-homogeneous stochastic dynamical systems, both discrete and continuous, and study the problem of learning a representation of the state that faithfully captures its dynamics. This is instrumental to learning the transfer operator or the generator of the system, which in turn can be used for numerous tasks, such as forecasting and interpreting the system dynamics. We show that the search for a good representation can be cast as an optimization problem over neural networks. Our approach is supported by recent results in statistical learning theory, highlighting the role of approximation error and metric distortion in the learning problem. The objective function we propose is associated with projection operators from the representation space to the data space, overcomes metric distortion, and can be empirically estimated from data. In the discrete-time setting, we further derive a relaxed objective function that is differentiable and numerically well-conditioned. We compare our method against state-of-the-art approaches on different datasets, showing better performance across the board.

Accurately predicting the survival rate of cancer patients is crucial for aiding clinicians in planning appropriate treatment, reducing cancer-related medical expenses, and significantly enhancing patients' quality of life. Multimodal prediction of cancer patient survival offers a more comprehensive and precise approach. However, existing methods still grapple with challenges related to missing multimodal data and information interaction within modalities. This paper introduces SELECTOR, a heterogeneous graph-aware network based on convolutional mask encoders for robust multimodal prediction of cancer patient survival. SELECTOR comprises feature edge reconstruction, convolutional mask encoder, feature cross-fusion, and multimodal survival prediction modules. Initially, we construct a multimodal heterogeneous graph and employ the meta-path method for feature edge reconstruction, ensuring comprehensive incorporation of feature information from graph edges and effective embedding of nodes. To mitigate the impact of missing features within the modality on prediction accuracy, we devised a convolutional masked autoencoder (CMAE) to process the heterogeneous graph post-feature reconstruction. Subsequently, the feature cross-fusion module facilitates communication between modalities, ensuring that output features encompass all features of the modality and relevant information from other modalities. Extensive experiments and analysis on six cancer datasets from TCGA demonstrate that our method significantly outperforms state-of-the-art methods in both modality-missing and intra-modality information-confirmed cases. Our codes are made available at //github.com/panliangrui/Selector.

Numerical experiments indicate that deep learning algorithms overcome the curse of dimensionality when approximating solutions of semilinear PDEs. For certain linear PDEs and semilinear PDEs with gradient-independent nonlinearities this has also been proved mathematically, i.e., it has been shown that the number of parameters of the approximating DNN increases at most polynomially in both the PDE dimension $d\in \mathbb{N}$ and the reciprocal of the prescribed accuracy $\epsilon\in (0,1)$. The main contribution of this paper is to rigorously prove for the first time that deep neural networks can also overcome the curse dimensionality in the approximation of a certain class of nonlinear PDEs with gradient-dependent nonlinearities.

This work presents a comparative review and classification between some well-known thermodynamically consistent models of hydrogel behavior in a large deformation setting, specifically focusing on solvent absorption/desorption and its impact on mechanical deformation and network swelling. The proposed discussion addresses formulation aspects, general mathematical classification of the governing equations, and numerical implementation issues based on the finite element method. The theories are presented in a unified framework demonstrating that, despite not being evident in some cases, all of them follow equivalent thermodynamic arguments. A detailed numerical analysis is carried out where Taylor-Hood elements are employed in the spatial discretization to satisfy the inf-sup condition and to prevent spurious numerical oscillations. The resulting discrete problems are solved using the FEniCS platform through consistent variational formulations, employing both monolithic and staggered approaches. We conduct benchmark tests on various hydrogel structures, demonstrating that major differences arise from the chosen volumetric response of the hydrogel. The significance of this choice is frequently underestimated in the state-of-the-art literature but has been shown to have substantial implications on the resulting hydrogel behavior.

This study introduces a reduced-order model (ROM) for analyzing the transient diffusion-deformation of hydrogels. The full-order model (FOM) describing hydrogel transient behavior consists of a coupled system of partial differential equations in which chemical potential and displacements are coupled. This system is formulated in a monolithic fashion and solved using the Finite Element Method (FEM). The ROM employs proper orthogonal decomposition as a model order reduction approach. We test the ROM performance through benchmark tests on hydrogel swelling behavior and a case study simulating co-axial printing. Finally, we embed the ROM into an optimization problem to identify the model material parameters of the coupled problem using full-field data. We verify that the ROM can predict hydrogels' diffusion-deformation evolution and material properties, significantly reducing computation time compared to the FOM. The results demonstrate the ROM's accuracy and computational efficiency. This work paths the way towards advanced practical applications of ROMs, e.g., in the context of feedback error control in hydrogel 3D printing.

Marginal structural models have been increasingly used by analysts in recent years to account for confounding bias in studies with time-varying treatments. The parameters of these models are often estimated using inverse probability of treatment weighting. To ensure that the estimated weights adequately control confounding, it is possible to check for residual imbalance between treatment groups in the weighted data. Several balance metrics have been developed and compared in the cross-sectional case but have not yet been evaluated and compared in longitudinal studies with time-varying treatment. We have first extended the definition of several balance metrics to the case of a time-varying treatment, with or without censoring. We then compared the performance of these balance metrics in a simulation study by assessing the strength of the association between their estimated level of imbalance and bias. We found that the Mahalanobis balance performed best.Finally, the method was illustrated for estimating the cumulative effect of statins exposure over one year on the risk of cardiovascular disease or death in people aged 65 and over in population-wide administrative data. This illustration confirms the feasibility of employing our proposed metrics in large databases with multiple time-points.

We establish a near-optimality guarantee for the full orthogonalization method (FOM), showing that the overall convergence of FOM is nearly as good as GMRES. In particular, we prove that at every iteration $k$, there exists an iteration $j\leq k$ for which the FOM residual norm at iteration $j$ is no more than $\sqrt{k+1}$ times larger than the GMRES residual norm at iteration $k$. This bound is sharp, and it has implications for algorithms for approximating the action of a matrix function on a vector.

We propose an alternative approach to neural network training using the monotone vector field, an idea inspired by the seminal work of Juditsky and Nemirovski [Juditsky & Nemirovsky, 2019] developed originally to solve parameter estimation problems for generalized linear models (GLM) by reducing the original non-convex problem to a convex problem of solving a monotone variational inequality (VI). Our approach leads to computationally efficient procedures that converge fast and offer guarantee in some special cases, such as training a single-layer neural network or fine-tuning the last layer of the pre-trained model. Our approach can be used for more efficient fine-tuning of a pre-trained model while freezing the bottom layers, an essential step for deploying many machine learning models such as large language models (LLM). We demonstrate its applicability in training fully-connected (FC) neural networks, graph neural networks (GNN), and convolutional neural networks (CNN) and show the competitive or better performance of our approach compared to stochastic gradient descent methods on both synthetic and real network data prediction tasks regarding various performance metrics.

We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.