The search and retrieval of digital histopathology slides is an important task that has yet to be solved. In this case study, we investigate the clinical readiness of three state-of-the-art histopathology slide search engines, Yottixel, SISH, and RetCCL, on three patients with solid tumors. We provide a qualitative assessment of each model's performance in providing retrieval results that are reliable and useful to pathologists. We found that all three image search engines fail to produce consistently reliable results and have difficulties in capturing granular and subtle features of malignancy, limiting their diagnostic accuracy. Based on our findings, we also propose a minimal set of requirements to further advance the development of accurate and reliable histopathology image search engines for successful clinical adoption.
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Automatically disentangling an author's style from the content of their writing is a longstanding and possibly insurmountable problem in computational linguistics. At the same time, the availability of large text corpora furnished with author labels has recently enabled learning authorship representations in a purely data-driven manner for authorship attribution, a task that ostensibly depends to a greater extent on encoding writing style than encoding content. However, success on this surrogate task does not ensure that such representations capture writing style since authorship could also be correlated with other latent variables, such as topic. In an effort to better understand the nature of the information these representations convey, and specifically to validate the hypothesis that they chiefly encode writing style, we systematically probe these representations through a series of targeted experiments. The results of these experiments suggest that representations learned for the surrogate authorship prediction task are indeed sensitive to writing style. As a consequence, authorship representations may be expected to be robust to certain kinds of data shift, such as topic drift over time. Additionally, our findings may open the door to downstream applications that require stylistic representations, such as style transfer.
After the inception of emotion recognition or affective computing, it has increasingly become an active research topic due to its broad applications. Over the past couple of decades, emotion recognition models have gradually migrated from statistically shallow models to neural network-based deep models, which can significantly boost the performance of emotion recognition models and consistently achieve the best results on different benchmarks. Therefore, in recent years, deep models have always been considered the first option for emotion recognition. However, the debut of large language models (LLMs), such as ChatGPT, has remarkably astonished the world due to their emerged capabilities of zero/few-shot learning, in-context learning, chain-of-thought, and others that are never shown in previous deep models. In the present paper, we comprehensively investigate how the LLMs perform in emotion recognition in terms of diverse aspects, including in-context learning, few-short learning, accuracy, generalisation, and explanation. Moreover, we offer some insights and pose other potential challenges, hoping to ignite broader discussions about enhancing emotion recognition in the new era of advanced and generalised large models.
In this study, we evaluated the capability of Large Language Models (LLMs), particularly OpenAI's GPT-4, in detecting software vulnerabilities, comparing their performance against traditional static code analyzers like Snyk and Fortify. Our analysis covered numerous repositories, including those from NASA and the Department of Defense. GPT-4 identified approximately four times the vulnerabilities than its counterparts. Furthermore, it provided viable fixes for each vulnerability, demonstrating a low rate of false positives. Our tests encompassed 129 code samples across eight programming languages, revealing the highest vulnerabilities in PHP and JavaScript. GPT-4's code corrections led to a 90% reduction in vulnerabilities, requiring only an 11% increase in code lines. A critical insight was LLMs' ability to self-audit, suggesting fixes for their identified vulnerabilities and underscoring their precision. Future research should explore system-level vulnerabilities and integrate multiple static code analyzers for a holistic perspective on LLMs' potential.
Out-of-distribution (OOD) detection plays a vital role in enhancing the reliability of machine learning (ML) models. The emergence of large language models (LLMs) has catalyzed a paradigm shift within the ML community, showcasing their exceptional capabilities across diverse natural language processing tasks. While existing research has probed OOD detection with smaller encoder-based Transformers like BERT and RoBERTa, the stark differences in scales, pre-training objectives, and inference paradigms call into question the applicability of these findings to LLMs. This paper embarks on a pioneering empirical investigation of OOD detection in the domain of LLMs, focusing on LLaMA series ranging from 7B to 65B in size. We thoroughly evaluate commonly-used OOD detectors, scrutinizing their performance in both zero-grad and fine-tuning scenarios. Notably, we alter previous discriminative in-distribution fine-tuning into generative fine-tuning, aligning the pre-training objective of LLMs with downstream tasks. Our findings unveil that a simple cosine distance OOD detector demonstrates superior efficacy, outperforming other OOD detectors. We provide an intriguing explanation for this phenomenon by highlighting the isotropic nature of the embedding spaces of LLMs, which distinctly contrasts with the anisotropic property observed in smaller BERT family models. The new insight enhances our understanding of how LLMs detect OOD data, thereby enhancing their adaptability and reliability in dynamic environments.
Software logs play an essential role in ensuring the reliability and maintainability of large-scale software systems, as they are often the sole source of runtime information. Log parsing, which converts raw log messages into structured data, is an important initial step towards downstream log analytics. In recent studies, ChatGPT, the current cutting-edge large language model (LLM), has been widely applied to a wide range of software engineering tasks. However, its performance in automated log parsing remains unclear. In this paper, we evaluate ChatGPT's ability to undertake log parsing by addressing two research questions. (1) Can ChatGPT effectively parse logs? (2) How does ChatGPT perform with different prompting methods? Our results show that ChatGPT can achieve promising results for log parsing with appropriate prompts, especially with few-shot prompting. Based on our findings, we outline several challenges and opportunities for ChatGPT-based log parsing.
Graph neural networks (GNNs) are a type of deep learning models that learning over graphs, and have been successfully applied in many domains. Despite the effectiveness of GNNs, it is still challenging for GNNs to efficiently scale to large graphs. As a remedy, distributed computing becomes a promising solution of training large-scale GNNs, since it is able to provide abundant computing resources. However, the dependency of graph structure increases the difficulty of achieving high-efficiency distributed GNN training, which suffers from the massive communication and workload imbalance. In recent years, many efforts have been made on distributed GNN training, and an array of training algorithms and systems have been proposed. Yet, there is a lack of systematic review on the optimization techniques from graph processing to distributed execution. In this survey, we analyze three major challenges in distributed GNN training that are massive feature communication, the loss of model accuracy and workload imbalance. Then we introduce a new taxonomy for the optimization techniques in distributed GNN training that address the above challenges. The new taxonomy classifies existing techniques into four categories that are GNN data partition, GNN batch generation, GNN execution model, and GNN communication protocol.We carefully discuss the techniques in each category. In the end, we summarize existing distributed GNN systems for multi-GPUs, GPU-clusters and CPU-clusters, respectively, and give a discussion about the future direction on scalable GNNs.
Many scientific problems require to process data in the form of geometric graphs. Unlike generic graph data, geometric graphs exhibit symmetries of translations, rotations, and/or reflections. Researchers have leveraged such inductive bias and developed geometrically equivariant Graph Neural Networks (GNNs) to better characterize the geometry and topology of geometric graphs. Despite fruitful achievements, it still lacks a survey to depict how equivariant GNNs are progressed, which in turn hinders the further development of equivariant GNNs. To this end, based on the necessary but concise mathematical preliminaries, we analyze and classify existing methods into three groups regarding how the message passing and aggregation in GNNs are represented. We also summarize the benchmarks as well as the related datasets to facilitate later researches for methodology development and experimental evaluation. The prospect for future potential directions is also provided.
Feature attribution methods are popular in interpretable machine learning. These methods compute the attribution of each input feature to represent its importance, but there is no consensus on the definition of "attribution", leading to many competing methods with little systematic evaluation, complicated in particular by the lack of ground truth attribution. To address this, we propose a dataset modification procedure to induce such ground truth. Using this procedure, we evaluate three common methods: saliency maps, rationales, and attentions. We identify several deficiencies and add new perspectives to the growing body of evidence questioning the correctness and reliability of these methods applied on datasets in the wild. We further discuss possible avenues for remedy and recommend new attribution methods to be tested against ground truth before deployment. The code is available at \url{//github.com/YilunZhou/feature-attribution-evaluation}.
Image segmentation is a key topic in image processing and computer vision with applications such as scene understanding, medical image analysis, robotic perception, video surveillance, augmented reality, and image compression, among many others. Various algorithms for image segmentation have been developed in the literature. Recently, due to the success of deep learning models in a wide range of vision applications, there has been a substantial amount of works aimed at developing image segmentation approaches using deep learning models. In this survey, we provide a comprehensive review of the literature at the time of this writing, covering a broad spectrum of pioneering works for semantic and instance-level segmentation, including fully convolutional pixel-labeling networks, encoder-decoder architectures, multi-scale and pyramid based approaches, recurrent networks, visual attention models, and generative models in adversarial settings. We investigate the similarity, strengths and challenges of these deep learning models, examine the most widely used datasets, report performances, and discuss promising future research directions in this area.
Graph Neural Networks (GNNs) for representation learning of graphs broadly follow a neighborhood aggregation framework, where the representation vector of a node is computed by recursively aggregating and transforming feature vectors of its neighboring nodes. Many GNN variants have been proposed and have achieved state-of-the-art results on both node and graph classification tasks. However, despite GNNs revolutionizing graph representation learning, there is limited understanding of their representational properties and limitations. Here, we present a theoretical framework for analyzing the expressive power of GNNs in capturing different graph structures. Our results characterize the discriminative power of popular GNN variants, such as Graph Convolutional Networks and GraphSAGE, and show that they cannot learn to distinguish certain simple graph structures. We then develop a simple architecture that is provably the most expressive among the class of GNNs and is as powerful as the Weisfeiler-Lehman graph isomorphism test. We empirically validate our theoretical findings on a number of graph classification benchmarks, and demonstrate that our model achieves state-of-the-art performance.
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