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We study the cone of completely positive (cp) matrices for the first interesting case $n = 5$. This is a semialgebraic set, which means that the polynomial equalities and inequlities that define its boundary can be derived. We characterize the different loci of this boundary and we examine the two open sets with cp-rank 5 or 6. A numerical algorithm is presented that is fast and able to compute the cp-factorization even for matrices in the boundary. With our results, many new example cases can be produced and several insightful numerical experiments are performed that illustrate the difficulty of the cp-factorization problem.

We develop a fully Bayesian nonparametric regression model based on a L\'evy process prior named MLABS (Multivariate L\'evy Adaptive B-Spline regression) model, a multivariate version of the LARK models, for obtaining an elaborate estimation of unknown functions with either varying degrees of smoothness or high interaction orders. L\'evy process priors have advantages of encouraging sparsity in the expansions and providing automatic selection over the number of basis functions. The unknown regression function is expressed as a weighted sum of tensor product of B-spline basis functions as the elements of an overcomplete system, which can deal with multi-dimensional data. The B-spline basis can express systematically functions with varying degrees of smoothness. By changing a set of degrees of the tensor product basis function, MLABS can adapt the smoothness of target functions due to the nice properties of B-spline bases. The local support of the B-spline basis enables the MLABS to make more delicate predictions than other existing methods in the two-dimensional surface data. For practice, we apply the structure of tensor products bases of (Bayesian) MARS to the MLABS model to reduce the computation burden. Experiments on various simulated and real-world datasets illustrate that the MLABS model has comparable performance on regression and classification problems. We also show that the MLABS model has more stable and accurate predictive abilities than state-of-the-art nonparametric regression models in relatively low-dimensional data.

Nonsmooth optimization problems arising in practice tend to exhibit beneficial smooth substructure: their domains stratify into "active manifolds" of smooth variation, which common proximal algorithms "identify" in finite time. Identification then entails a transition to smooth dynamics, and accommodates second-order acceleration techniques. While identification is clearly useful algorithmically, empirical evidence suggests that even those algorithms that do not identify the active manifold in finite time -- notably the subgradient method -- are nonetheless affected by it. This work seeks to explain this phenomenon, asking: how do active manifolds impact the subgradient method in nonsmooth optimization? In this work, we answer this question by introducing two algorithmically useful properties -- aiming and subgradient approximation -- that fully expose the smooth substructure of the problem. We show that these properties imply that the shadow of the (stochastic) subgradient method along the active manifold is precisely an inexact Riemannian gradient method with an implicit retraction. We prove that these properties hold for a wide class of problems, including cone reducible/decomposable functions and generic semialgebraic problems. Moreover, we develop a thorough calculus, proving such properties are preserved under smooth deformations and spectral lifts. This viewpoint then leads to several algorithmic consequences that parallel results in smooth optimization, despite the nonsmoothness of the problem: local rates of convergence, asymptotic normality, and saddle point avoidance. The asymptotic normality results appear to be new even in the most classical setting of stochastic nonlinear programming. The results culminate in the following observation: the perturbed subgradient method on generic, Clarke regular semialgebraic problems, converges only to local minimizers.

In this paper, we propose a novel method for solving high-dimensional spectral fractional Laplacian equations. Using the Caffarelli-Silvestre extension, the $d$-dimensional spectral fractional equation is reformulated as a regular partial differential equation of dimension $d+1$. We transform the extended equation as a minimal Ritz energy functional problem and search for its minimizer in a special class of deep neural networks. Moreover, based on the approximation property of networks, we establish estimates on the error made by the deep Ritz method. Numerical results are reported to demonstrate the effectiveness of the proposed method for solving fractional Laplacian equations up to ten dimensions.

In this paper, we propose a novel accelerated gradient method called ANITA for solving the fundamental finite-sum optimization problems. Concretely, we consider both general convex and strongly convex settings: i) For general convex finite-sum problems, ANITA improves previous state-of-the-art result given by Varag (Lan et al., 2019). In particular, for large-scale problems or the target error is not very small, i.e., $n \geq \frac{1}{\epsilon^2}$, ANITA obtains the \emph{first} optimal result $O(n)$, matching the lower bound $\Omega(n)$ provided by Woodworth and Srebro (2016), while previous results are $O(n \log \frac{1}{\epsilon})$ of Varag (Lan et al., 2019) and $O(\frac{n}{\sqrt{\epsilon}})$ of Katyusha (Allen-Zhu, 2017). ii) For strongly convex finite-sum problems, we also show that ANITA can achieve the optimal convergence rate $O\big((n+\sqrt{\frac{nL}{\mu}})\log\frac{1}{\epsilon}\big)$ matching the lower bound $\Omega\big((n+\sqrt{\frac{nL}{\mu}})\log\frac{1}{\epsilon}\big)$ provided by Lan and Zhou (2015). Besides, ANITA enjoys a simpler loopless algorithmic structure unlike previous accelerated algorithms such as Varag (Lan et al., 2019) and Katyusha (Allen-Zhu, 2017) where they use an inconvenient double-loop structure. Moreover, by exploiting the loopless structure of ANITA, we provide a new \emph{dynamic multi-stage convergence analysis}, which is the key technical part for improving previous results to the optimal rates. Finally, the numerical experiments show that ANITA converges faster than the previous state-of-the-art Varag (Lan et al., 2019), validating our theoretical results and confirming the practical superiority of ANITA. We believe that our new theoretical rates and convergence analysis for this fundamental finite-sum problem will directly lead to key improvements for many other related problems, such as distributed/federated/decentralized optimization problems.

The trace of a matrix function f(A), most notably of the matrix inverse, can be estimated stochastically using samples< x,f(A)x> if the components of the random vectors x obey an appropriate probability distribution. However such a Monte-Carlo sampling suffers from the fact that the accuracy depends quadratically of the samples to use, thus making higher precision estimation very costly. In this paper we suggest and investigate a multilevel Monte-Carlo approach which uses a multigrid hierarchy to stochastically estimate the trace. This results in a substantial reduction of the variance, so that higher precision can be obtained at much less effort. We illustrate this for the trace of the inverse using three different classes of matrices.

Semi-functional linear regression models postulate a linear relationship between a scalar response and a functional covariate, and also include a non-parametric component involving a univariate explanatory variable. It is of practical importance to obtain estimators for these models that are robust against high-leverage outliers, which are generally difficult to identify and may cause serious damage to least squares and Huber-type $M$-estimators. For that reason, robust estimators for semi-functional linear regression models are constructed combining $B$-splines to approximate both the functional regression parameter and the nonparametric component with robust regression estimators based on a bounded loss function and a preliminary residual scale estimator. Consistency and rates of convergence for the proposed estimators are derived under mild regularity conditions. The reported numerical experiments show the advantage of the proposed methodology over the classical least squares and Huber-type $M$-estimators for finite samples. The analysis of real examples illustrate that the robust estimators provide better predictions for non-outlying points than the classical ones, and that when potential outliers are removed from the training and test sets both methods behave very similarly.

Survey data are often collected under multistage sampling designs where units are binned to clusters that are sampled in a first stage. The unit-indexed population variables of interest are typically dependent within cluster. We propose a Fully Bayesian method that constructs an exact likelihood for the observed sample to incorporate unit-level marginal sampling weights for performing unbiased inference for population parameters while simultaneously accounting for the dependence induced by sampling clusters of units to produce correct uncertainty quantification. Our approach parameterizes cluster-indexed random effects in both a marginal model for the response and a conditional model for published, unit-level sampling weights. We compare our method to plug-in Bayesian and frequentist alternatives in a simulation study and demonstrate that our method most closely achieves correct uncertainty quantification for model parameters, including the generating variances for cluster-indexed random effects. We demonstrate our method in an application with NHANES data.

In statistical applications, it is common to encounter parameters supported on a varying or unknown dimensional space. Examples include the fused lasso regression, the matrix recovery under an unknown low rank, etc. Despite the ease of obtaining a point estimate via the optimization, it is much more challenging to quantify their uncertainty -- in the Bayesian framework, a major difficulty is that if assigning the prior associated with a $p$-dimensional measure, then there is zero posterior probability on any lower-dimensional subset with dimension $d<p$; to avoid this caveat, one needs to choose another dimension-selection prior on $d$, which often involves a highly combinatorial problem. To significantly reduce the modeling burden, we propose a new generative process for the prior: starting from a continuous random variable such as multivariate Gaussian, we transform it into a varying-dimensional space using the proximal mapping. This leads to a large class of new Bayesian models that can directly exploit the popular frequentist regularizations and their algorithms, such as the nuclear norm penalty and the alternating direction method of multipliers, while providing a principled and probabilistic uncertainty estimation. We show that this framework is well justified in the geometric measure theory, and enjoys a convenient posterior computation via the standard Hamiltonian Monte Carlo. We demonstrate its use in the analysis of the dynamic flow network data.

We show that for the problem of testing if a matrix $A \in F^{n \times n}$ has rank at most $d$, or requires changing an $\epsilon$-fraction of entries to have rank at most $d$, there is a non-adaptive query algorithm making $\widetilde{O}(d^2/\epsilon)$ queries. Our algorithm works for any field $F$. This improves upon the previous $O(d^2/\epsilon^2)$ bound (SODA'03), and bypasses an $\Omega(d^2/\epsilon^2)$ lower bound of (KDD'14) which holds if the algorithm is required to read a submatrix. Our algorithm is the first such algorithm which does not read a submatrix, and instead reads a carefully selected non-adaptive pattern of entries in rows and columns of $A$. We complement our algorithm with a matching query complexity lower bound for non-adaptive testers over any field. We also give tight bounds of $\widetilde{\Theta}(d^2)$ queries in the sensing model for which query access comes in the form of $\langle X_i, A\rangle:=tr(X_i^\top A)$; perhaps surprisingly these bounds do not depend on $\epsilon$. We next develop a novel property testing framework for testing numerical properties of a real-valued matrix $A$ more generally, which includes the stable rank, Schatten-$p$ norms, and SVD entropy. Specifically, we propose a bounded entry model, where $A$ is required to have entries bounded by $1$ in absolute value. We give upper and lower bounds for a wide range of problems in this model, and discuss connections to the sensing model above.