Machine learning (ML) plays an important role in quantum chemistry, providing fast-to-evaluate predictive models for various properties of molecules. However, as most existing ML models for molecular electronic properties use density function theory (DFT) databases as the ground truth in training, their prediction accuracy cannot go beyond the DFT. In this work, we developed a unified ML method for electronic structures of organic molecules using the gold-standard CCSD(T) calculations as training data. Tested on hydrocarbon molecules, our model outperforms the DFT with the widely-used B3LYP functional in both computation costs and prediction accuracy of various quantum chemical properties. We apply the model to aromatic compounds and semiconducting polymers on both ground state and excited state properties, demonstrating its accuracy and generalization capability to complex systems that are hard to calculate using CCSD(T)-level methods.
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Biological neural networks seem qualitatively superior (e.g. in learning, flexibility, robustness) from current artificial like Multi-Layer Perceptron (MLP) or Kolmogorov-Arnold Network (KAN). Simultaneously, in contrast to them: have fundamentally multidirectional signal propagation~\cite{axon}, also of probability distributions e.g. for uncertainty estimation, and are believed not being able to use standard backpropagation training~\cite{backprop}. There are proposed novel artificial neurons based on HCR (Hierarchical Correlation Reconstruction) removing the above low level differences: with neurons containing local joint distribution model (of its connections), representing joint density on normalized variables as just linear combination among $(f_\mathbf{j})$ orthonormal polynomials: $\rho(\mathbf{x})=\sum_{\mathbf{j}\in B} a_\mathbf{j} f_\mathbf{j}(\mathbf{x})$ for $\mathbf{x} \in [0,1]^d$ and $B$ some chosen basis, with basis growth approaching complete description of joint distribution. By various index summations of such $(a_\mathbf{j})$ tensor as neuron parameters, we get simple formulas for e.g. conditional expected values for propagation in any direction, like $E[x|y,z]$, $E[y|x]$, which degenerate to KAN-like parametrization if restricting to pairwise dependencies. Such HCR network can also propagate probability distributions (also joint) like $\rho(y,z|x)$. It also allows for additional training approaches, like direct $(a_\mathbf{j})$ estimation, through tensor decomposition, or more biologically plausible information bottleneck training: layers directly influencing only neighbors, optimizing content to maximize information about the next layer, and minimizing about the previous to minimize the noise.
Collecting large quantities of high-quality data can be prohibitively expensive or impractical, and a bottleneck in machine learning. One may instead augment a small set of $n$ data points from the target distribution with data from more accessible sources, e.g. data collected under different circumstances or synthesized by generative models. We refer to such data as `surrogate data.' We introduce a weighted empirical risk minimization (ERM) approach for integrating surrogate data into training. We analyze mathematically this method under several classical statistical models, and validate our findings empirically on datasets from different domains. Our main findings are: $(i)$ Integrating surrogate data can significantly reduce the test error on the original distribution. Surprisingly, this can happen even when the surrogate data is unrelated to the original ones. We trace back this behavior to the classical Stein's paradox. $(ii)$ In order to reap the benefit of surrogate data, it is crucial to use optimally weighted ERM. $(iii)$ The test error of models trained on mixtures of real and surrogate data is approximately described by a scaling law. This scaling law can be used to predict the optimal weighting scheme, and to choose the amount of surrogate data to add.
A non-linear complex system governed by multi-spatial and multi-temporal physics scales cannot be fully understood with a single diagnostic, as each provides only a partial view and much information is lost during data extraction. Combining multiple diagnostics also results in imperfect projections of the system's physics. By identifying hidden inter-correlations between diagnostics, we can leverage mutual support to fill in these gaps, but uncovering these inter-correlations analytically is too complex. We introduce a groundbreaking machine learning methodology to address this issue. Our multimodal approach generates super resolution data encompassing multiple physics phenomena, capturing detailed structural evolution and responses to perturbations previously unobservable. This methodology addresses a critical problem in fusion plasmas: the Edge Localized Mode (ELM), a plasma instability that can severely damage reactor walls. One method to stabilize ELM is using resonant magnetic perturbation to trigger magnetic islands. However, low spatial and temporal resolution of measurements limits the analysis of these magnetic islands due to their small size, rapid dynamics, and complex interactions within the plasma. With super-resolution diagnostics, we can experimentally verify theoretical models of magnetic islands for the first time, providing unprecedented insights into their role in ELM stabilization. This advancement aids in developing effective ELM suppression strategies for future fusion reactors like ITER and has broader applications, potentially revolutionizing diagnostics in fields such as astronomy, astrophysics, and medical imaging.
This research presents a comprehensive approach to predicting the duration of traffic incidents and classifying them as short-term or long-term across the Sydney Metropolitan Area. Leveraging a dataset that encompasses detailed records of traffic incidents, road network characteristics, and socio-economic indicators, we train and evaluate a variety of advanced machine learning models including Gradient Boosted Decision Trees (GBDT), Random Forest, LightGBM, and XGBoost. The models are assessed using Root Mean Square Error (RMSE) for regression tasks and F1 score for classification tasks. Our experimental results demonstrate that XGBoost and LightGBM outperform conventional models with XGBoost achieving the lowest RMSE of 33.7 for predicting incident duration and highest classification F1 score of 0.62 for a 30-minute duration threshold. For classification, the 30-minute threshold balances performance with 70.84\% short-term duration classification accuracy and 62.72\% long-term duration classification accuracy. Feature importance analysis, employing both tree split counts and SHAP values, identifies the number of affected lanes, traffic volume, and types of primary and secondary vehicles as the most influential features. The proposed methodology not only achieves high predictive accuracy but also provides stakeholders with vital insights into factors contributing to incident durations. These insights enable more informed decision-making for traffic management and response strategies. The code is available by the link: //github.com/Future-Mobility-Lab/SydneyIncidents
This paper presents a structure-preserving Bayesian approach for learning nonseparable Hamiltonian systems using stochastic dynamic models allowing for statistically-dependent, vector-valued additive and multiplicative measurement noise. The approach is comprised of three main facets. First, we derive a Gaussian filter for a statistically-dependent, vector-valued, additive and multiplicative noise model that is needed to evaluate the likelihood within the Bayesian posterior. Second, we develop a novel algorithm for cost-effective application of Bayesian system identification to high-dimensional systems. Third, we demonstrate how structure-preserving methods can be incorporated into the proposed framework, using nonseparable Hamiltonians as an illustrative system class. We assess the method's performance based on the forecasting accuracy of a model estimated from-single trajectory data. We compare the Bayesian method to a state-of-the-art machine learning method on a canonical nonseparable Hamiltonian model and a chaotic double pendulum model with small, noisy training datasets. The results show that using the Bayesian posterior as a training objective can yield upwards of 724 times improvement in Hamiltonian mean squared error using training data with up to 10% multiplicative noise compared to a standard training objective. Lastly, we demonstrate the utility of the novel algorithm for parameter estimation of a 64-dimensional model of the spatially-discretized nonlinear Schr\"odinger equation with data corrupted by up to 20% multiplicative noise.
Quantum low-density parity-check codes are a promising candidate for fault-tolerant quantum computing with considerably reduced overhead compared to the surface code. However, the lack of a practical decoding algorithm remains a barrier to their implementation. In this work, we introduce localized statistics decoding, a reliability-guided inversion decoder that is highly parallelizable and applicable to arbitrary quantum low-density parity-check codes. Our approach employs a parallel matrix factorization strategy, which we call on-the-fly elimination, to identify, validate, and solve local decoding regions on the decoding graph. Through numerical simulations, we show that localized statistics decoding matches the performance of state-of-the-art decoders while reducing the runtime complexity for operation in the sub-threshold regime. Importantly, our decoder is more amenable to implementation on specialized hardware, positioning it as a promising candidate for decoding real-time syndromes from experiments.
This dissertation studies a fundamental open challenge in deep learning theory: why do deep networks generalize well even while being overparameterized, unregularized and fitting the training data to zero error? In the first part of the thesis, we will empirically study how training deep networks via stochastic gradient descent implicitly controls the networks' capacity. Subsequently, to show how this leads to better generalization, we will derive {\em data-dependent} {\em uniform-convergence-based} generalization bounds with improved dependencies on the parameter count. Uniform convergence has in fact been the most widely used tool in deep learning literature, thanks to its simplicity and generality. Given its popularity, in this thesis, we will also take a step back to identify the fundamental limits of uniform convergence as a tool to explain generalization. In particular, we will show that in some example overparameterized settings, {\em any} uniform convergence bound will provide only a vacuous generalization bound. With this realization in mind, in the last part of the thesis, we will change course and introduce an {\em empirical} technique to estimate generalization using unlabeled data. Our technique does not rely on any notion of uniform-convergece-based complexity and is remarkably precise. We will theoretically show why our technique enjoys such precision. We will conclude by discussing how future work could explore novel ways to incorporate distributional assumptions in generalization bounds (such as in the form of unlabeled data) and explore other tools to derive bounds, perhaps by modifying uniform convergence or by developing completely new tools altogether.
We derive information-theoretic generalization bounds for supervised learning algorithms based on the information contained in predictions rather than in the output of the training algorithm. These bounds improve over the existing information-theoretic bounds, are applicable to a wider range of algorithms, and solve two key challenges: (a) they give meaningful results for deterministic algorithms and (b) they are significantly easier to estimate. We show experimentally that the proposed bounds closely follow the generalization gap in practical scenarios for deep learning.
The remarkable practical success of deep learning has revealed some major surprises from a theoretical perspective. In particular, simple gradient methods easily find near-optimal solutions to non-convex optimization problems, and despite giving a near-perfect fit to training data without any explicit effort to control model complexity, these methods exhibit excellent predictive accuracy. We conjecture that specific principles underlie these phenomena: that overparametrization allows gradient methods to find interpolating solutions, that these methods implicitly impose regularization, and that overparametrization leads to benign overfitting. We survey recent theoretical progress that provides examples illustrating these principles in simpler settings. We first review classical uniform convergence results and why they fall short of explaining aspects of the behavior of deep learning methods. We give examples of implicit regularization in simple settings, where gradient methods lead to minimal norm functions that perfectly fit the training data. Then we review prediction methods that exhibit benign overfitting, focusing on regression problems with quadratic loss. For these methods, we can decompose the prediction rule into a simple component that is useful for prediction and a spiky component that is useful for overfitting but, in a favorable setting, does not harm prediction accuracy. We focus specifically on the linear regime for neural networks, where the network can be approximated by a linear model. In this regime, we demonstrate the success of gradient flow, and we consider benign overfitting with two-layer networks, giving an exact asymptotic analysis that precisely demonstrates the impact of overparametrization. We conclude by highlighting the key challenges that arise in extending these insights to realistic deep learning settings.
Graph representation learning for hypergraphs can be used to extract patterns among higher-order interactions that are critically important in many real world problems. Current approaches designed for hypergraphs, however, are unable to handle different types of hypergraphs and are typically not generic for various learning tasks. Indeed, models that can predict variable-sized heterogeneous hyperedges have not been available. Here we develop a new self-attention based graph neural network called Hyper-SAGNN applicable to homogeneous and heterogeneous hypergraphs with variable hyperedge sizes. We perform extensive evaluations on multiple datasets, including four benchmark network datasets and two single-cell Hi-C datasets in genomics. We demonstrate that Hyper-SAGNN significantly outperforms the state-of-the-art methods on traditional tasks while also achieving great performance on a new task called outsider identification. Hyper-SAGNN will be useful for graph representation learning to uncover complex higher-order interactions in different applications.
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