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Structural locality is a ubiquitous feature of real-world datasets, wherein data points are organized into local hierarchies. Some examples include topical clusters in text or project hierarchies in source code repositories. In this paper, we explore utilizing this structural locality within non-parametric language models, which generate sequences that reference retrieved examples from an external source. We propose a simple yet effective approach for adding locality information into such models by adding learned parameters that improve the likelihood of retrieving examples from local neighborhoods. Experiments on two different domains, Java source code and Wikipedia text, demonstrate that locality features improve model efficacy over models without access to these features, with interesting differences. We also perform an analysis of how and where locality features contribute to improved performance and why the traditionally used contextual similarity metrics alone are not enough to grasp the locality structure.

This paper studies the problem of computing a linear approximation of quadratic Wasserstein distance $W_2$. In particular, we compute an approximation of the negative homogeneous weighted Sobolev norm whose connection to Wasserstein distance follows from a classic linearization of a general Monge-Amp\'ere equation. Our contribution is threefold. First, we provide expository material on this classic linearization of Wasserstein distance including a quantitative error estimate. econd, we reduce the computational problem to solving a elliptic boundary value problem involving the Witten Laplacian, which is a Schr\"odinger operator of the form $H = -\Delta + V$, and describe an associated embedding. Third, for the case of probability distributions on the unit square $[0,1]^2$ represented by $n \times n$ arrays we present a fast code demonstrating our approach. Several numerical examples are presented.

Comparing probability distributions is an indispensable and ubiquitous task in machine learning and statistics. The most common way to compare a pair of Borel probability measures is to compute a metric between them, and by far the most widely used notions of metric are the Wasserstein metric and the total variation metric. The next most common way is to compute a divergence between them, and in this case almost every known divergences such as those of Kullback--Leibler, Jensen--Shannon, R\'enyi, and many more, are special cases of the $f$-divergence. Nevertheless these metrics and divergences may only be computed, in fact, are only defined, when the pair of probability measures are on spaces of the same dimension. How would one quantify, say, a KL-divergence between the uniform distribution on the interval $[-1,1]$ and a Gaussian distribution on $\mathbb{R}^3$? We show that these common notions of metrics and divergences give rise to natural distances between Borel probability measures defined on spaces of different dimensions, e.g., one on $\mathbb{R}^m$ and another on $\mathbb{R}^n$ where $m, n$ are distinct, so as to give a meaningful answer to the previous question.

Wasserstein barycenters have become popular due to their ability to represent the average of probability measures in a geometrically meaningful way. In this paper, we present an algorithm to approximate the Wasserstein-2 barycenters of continuous measures via a generative model. Previous approaches rely on regularization (entropic/quadratic) which introduces bias or on input convex neural networks which are not expressive enough for large-scale tasks. In contrast, our algorithm does not introduce bias and allows using arbitrary neural networks. In addition, based on the celebrity faces dataset, we construct Ave, celeba! dataset which can be used for quantitative evaluation of barycenter algorithms by using standard metrics of generative models such as FID.

Posterior contractions rates (PCRs) strengthen the notion of Bayesian consistency, quantifying the speed at which the posterior distribution concentrates on arbitrarily small neighborhoods of the true model, with probability tending to 1 or almost surely, as the sample size goes to infinity. Under the Bayesian nonparametric framework, a common assumption in the study of PCRs is that the model is dominated for the observations; that is, it is assumed that the posterior can be written through the Bayes formula. In this paper, we consider the problem of establishing PCRs in Bayesian nonparametric models where the posterior distribution is not available through the Bayes formula, and hence models that are non-dominated for the observations. By means of the Wasserstein distance and a suitable sieve construction, our main result establishes PCRs in Bayesian nonparametric models where the posterior is available through a more general disintegration than the Bayes formula. To the best of our knowledge, this is the first general approach to provide PCRs in non-dominated Bayesian nonparametric models, and it relies on minimal modeling assumptions and on a suitable continuity assumption for the posterior distribution. Some refinements of our result are presented under additional assumptions on the prior distribution, and applications are given with respect to the Dirichlet process prior and the normalized extended Gamma process prior.

Minimizing functionals in the space of probability distributions can be done with Wasserstein gradient flows. To solve them numerically, a possible approach is to rely on the Jordan-Kinderlehrer-Otto (JKO) scheme which is analogous to the proximal scheme in Euclidean spaces. However, it requires solving a nested optimization problem at each iteration, and is known for its computational challenges, especially in high dimension. To alleviate it, very recent works propose to approximate the JKO scheme leveraging Brenier's theorem, and using gradients of Input Convex Neural Networks to parameterize the density (JKO-ICNN). However, this method comes with a high computational cost and stability issues. Instead, this work proposes to use gradient flows in the space of probability measures endowed with the sliced-Wasserstein (SW) distance. We argue that this method is more flexible than JKO-ICNN, since SW enjoys a closed-form differentiable approximation. Thus, the density at each step can be parameterized by any generative model which alleviates the computational burden and makes it tractable in higher dimensions.

Unmeasured or latent variables are often the cause of correlations between multivariate measurements, which are studied in a variety of fields such as psychology, ecology, and medicine. For Gaussian measurements, there are classical tools such as factor analysis or principal component analysis with a well-established theory and fast algorithms. Generalized Linear Latent Variable models (GLLVMs) generalize such factor models to non-Gaussian responses. However, current algorithms for estimating model parameters in GLLVMs require intensive computation and do not scale to large datasets with thousands of observational units or responses. In this article, we propose a new approach for fitting GLLVMs to high-dimensional datasets, based on approximating the model using penalized quasi-likelihood and then using a Newton method and Fisher scoring to learn the model parameters. Computationally, our method is noticeably faster and more stable, enabling GLLVM fits to much larger matrices than previously possible. We apply our method on a dataset of 48,000 observational units with over 2,000 observed species in each unit and find that most of the variability can be explained with a handful of factors. We publish an easy-to-use implementation of our proposed fitting algorithm.

The quadratic Wasserstein metric has shown its power in measuring the difference between probability densities, which benefits optimization objective function with better convexity and is insensitive to data noise. Nevertheless, it is always an important question to make the seismic signals suitable for comparison using the quadratic Wasserstein metric. The squaring scaling is worth exploring since it guarantees the convexity caused by data shift. However, as mentioned in [Commun. Inf. Syst., 2019, 19:95-145], the squaring scaling may lose uniqueness and result in more local minima to the misfit function. In our previous work [J. Comput. Phys., 2018, 373:188-209], the quadratic Wasserstein metric with squaring scaling was successfully applied to the earthquake location problem. But it only discussed the inverse problem with few degrees of freedom. In this work, we will present a more in-depth study on the combination of squaring scaling technique and the quadratic Wasserstein metric. By discarding some inapplicable data, picking seismic phases, and developing a new normalization method, we successfully invert the seismic velocity structure based on the squaring scaling technique and the quadratic Wasserstein metric. The numerical experiments suggest that this newly proposed method is an efficient approach to obtain more accurate inversion results.

We propose new approximate alternating projection methods, based on randomized sketching, for the low-rank nonnegative matrix approximation problem: find a low-rank approximation of a nonnegative matrix that is nonnegative, but whose factors can be arbitrary. We calculate the computational complexities of the proposed methods and evaluate their performance in numerical experiments. The comparison with the known deterministic alternating projection methods shows that the randomized approaches are faster and exhibit similar convergence properties.

We propose the Wasserstein Auto-Encoder (WAE)---a new algorithm for building a generative model of the data distribution. WAE minimizes a penalized form of the Wasserstein distance between the model distribution and the target distribution, which leads to a different regularizer than the one used by the Variational Auto-Encoder (VAE). This regularizer encourages the encoded training distribution to match the prior. We compare our algorithm with several other techniques and show that it is a generalization of adversarial auto-encoders (AAE). Our experiments show that WAE shares many of the properties of VAEs (stable training, encoder-decoder architecture, nice latent manifold structure) while generating samples of better quality, as measured by the FID score.