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Deep learning has made significant progress in protein structure prediction, advancing the development of computational biology. However, despite the high accuracy achieved in predicting single-chain structures, a significant number of large homo-oligomeric assemblies exhibit internal symmetry, posing a major challenge in structure determination. The performances of existing deep learning methods are limited since the symmetrical protein assembly usually has a long sequence, making structural computation infeasible. In addition, multiple identical subunits in symmetrical protein complex cause the issue of supervision ambiguity in label assignment, requiring a consistent structure modeling for the training. To tackle these problems, we propose a protein folding framework called SGNet to model protein-protein interactions in symmetrical assemblies. SGNet conducts feature extraction on a single subunit and generates the whole assembly using our proposed symmetry module, which largely mitigates computational problems caused by sequence length. Thanks to the elaborate design of modeling symmetry consistently, we can model all global symmetry types in quaternary protein structure prediction. Extensive experimental results on a benchmark of symmetrical protein complexes further demonstrate the effectiveness of our method.

We introduce AnyGPT, an any-to-any multimodal language model that utilizes discrete representations for the unified processing of various modalities, including speech, text, images, and music. AnyGPT can be trained stably without any alterations to the current large language model (LLM) architecture or training paradigms. Instead, it relies exclusively on data-level preprocessing, facilitating the seamless integration of new modalities into LLMs, akin to the incorporation of new languages. We build a multimodal text-centric dataset for multimodal alignment pre-training. Utilizing generative models, we synthesize the first large-scale any-to-any multimodal instruction dataset. It consists of 108k samples of multi-turn conversations that intricately interweave various modalities, thus equipping the model to handle arbitrary combinations of multimodal inputs and outputs. Experimental results demonstrate that AnyGPT is capable of facilitating any-to-any multimodal conversation while achieving performance comparable to specialized models across all modalities, proving that discrete representations can effectively and conveniently unify multiple modalities within a language model. Demos are shown in //junzhan2000.github.io/AnyGPT.github.io/

Large language models generate high-quality responses with potential misinformation, underscoring the need for regulation by distinguishing AI-generated and human-written texts. Watermarking is pivotal in this context, which involves embedding hidden markers in texts during the LLM inference phase, which is imperceptible to humans. Current watermarking algorithms, however, face the challenge of achieving both the detectability of inserted watermarks and the semantic integrity of generated texts, where enhancing one aspect often undermines the other. To overcome this, we introduce a novel multi-objective optimization (MOO) approach for watermarking that utilizes lightweight networks to generate token-specific watermarking logits and splitting ratios. By leveraging MOO to optimize for both detection and semantic objective functions, our method simultaneously achieves detectability and semantic integrity. Experimental results show that our method outperforms current watermarking techniques in enhancing the detectability of texts generated by LLMs while maintaining their semantic coherence. Our code is available at //github.com/mignonjia/TS_watermark.

Amidst task-specific learning-based control synthesis frameworks that achieve impressive empirical results, a unified framework that systematically constructs an optimal policy for sufficiently solving a general notion of a task is absent. Hence, we propose a theoretical framework for a task-centered control synthesis leveraging two critical ideas: 1) oracle-guided policy optimization for the non-limiting integration of sub-optimal task-based priors to guide the policy optimization and 2) task-vital multimodality to break down solving a task into executing a sequence of behavioral modes. The proposed approach results in highly agile parkour and diving on a 16-DoF dynamic bipedal robot. The obtained policy advances indefinitely on a track, performing leaps and jumps of varying lengths and heights for the parkour task. Corresponding to the dive task, the policy demonstrates front, back, and side flips from various initial heights. Finally, we introduce a novel latent mode space reachability analysis to study our policies' versatility and generalization by computing a feasible mode set function through which we certify a set of failure-free modes for our policy to perform at any given state.

Multi-Source cross-lingual transfer learning deals with the transfer of task knowledge from multiple labelled source languages to an unlabeled target language under the language shift. Existing methods typically focus on weighting the predictions produced by language-specific classifiers of different sources that follow a shared encoder. However, all source languages share the same encoder, which is updated by all these languages. The extracted representations inevitably contain different source languages' information, which may disturb the learning of the language-specific classifiers. Additionally, due to the language gap, language-specific classifiers trained with source labels are unable to make accurate predictions for the target language. Both facts impair the model's performance. To address these challenges, we propose a Disentangled and Adaptive Network (DA-Net). Firstly, we devise a feedback-guided collaborative disentanglement method that seeks to purify input representations of classifiers, thereby mitigating mutual interference from multiple sources. Secondly, we propose a class-aware parallel adaptation method that aligns class-level distributions for each source-target language pair, thereby alleviating the language pairs' language gap. Experimental results on three different tasks involving 38 languages validate the effectiveness of our approach.

A better understanding of the emergent computation and problem-solving capabilities of recent large language models is of paramount importance to further improve them and broaden their applicability. This work investigates how a language model, trained to predict the next token, can perform arithmetic computations generalizing beyond training data. Binary addition and multiplication constitute a good testbed for this purpose, since they require a very small vocabulary and exhibit relevant input/output discontinuities making smooth input interpolation ineffective for novel data. We successfully trained a light language model to learn these tasks and ran a number of experiments to investigate the extrapolation capabilities and internal information processing. Our findings support the hypothesis that the language model works as an Encoding-Regression-Decoding machine where the computation takes place in the value space once the input token representation is mapped to an appropriate internal representation.

Knowledge distillation, the technique of transferring knowledge from large, complex models to smaller ones, marks a pivotal step towards efficient AI deployment. Distilling Step-by-Step (DSS), a novel method utilizing chain-of-thought (CoT) distillation, has demonstrated promise by imbuing smaller models with the superior reasoning capabilities of their larger counterparts. In DSS, the distilled model acquires the ability to generate rationales and predict labels concurrently through a multi-task learning framework. However, DSS overlooks the intrinsic relationship between the two training tasks, leading to ineffective integration of CoT knowledge with the task of label prediction. To this end, we investigate the mutual relationship of the two tasks from Information Bottleneck perspective and formulate it as maximizing the mutual information of the representation features of the two tasks. We propose a variational approach to solve this optimization problem using a learning-based method. Our experimental results across four datasets demonstrate that our method outperforms the state-of-the-art DSS. Our findings offer insightful guidance for future research on language model distillation as well as applications involving CoT. Code and models will be released soon.

Influenced by the stunning success of deep learning in computer vision and language understanding, research in recommendation has shifted to inventing new recommender models based on neural networks. In recent years, we have witnessed significant progress in developing neural recommender models, which generalize and surpass traditional recommender models owing to the strong representation power of neural networks. In this survey paper, we conduct a systematic review on neural recommender models, aiming to summarize the field to facilitate future progress. Distinct from existing surveys that categorize existing methods based on the taxonomy of deep learning techniques, we instead summarize the field from the perspective of recommendation modeling, which could be more instructive to researchers and practitioners working on recommender systems. Specifically, we divide the work into three types based on the data they used for recommendation modeling: 1) collaborative filtering models, which leverage the key source of user-item interaction data; 2) content enriched models, which additionally utilize the side information associated with users and items, like user profile and item knowledge graph; and 3) context enriched models, which account for the contextual information associated with an interaction, such as time, location, and the past interactions. After reviewing representative works for each type, we finally discuss some promising directions in this field, including benchmarking recommender systems, graph reasoning based recommendation models, and explainable and fair recommendations for social good.

In order to answer natural language questions over knowledge graphs, most processing pipelines involve entity and relation linking. Traditionally, entity linking and relation linking has been performed either as dependent sequential tasks or independent parallel tasks. In this paper, we propose a framework called "EARL", which performs entity linking and relation linking as a joint single task. EARL uses a graph connection based solution to the problem. We model the linking task as an instance of the Generalised Travelling Salesman Problem (GTSP) and use GTSP approximate algorithm solutions. We later develop EARL which uses a pair-wise graph-distance based solution to the problem.The system determines the best semantic connection between all keywords of the question by referring to a knowledge graph. This is achieved by exploiting the "connection density" between entity candidates and relation candidates. The "connection density" based solution performs at par with the approximate GTSP solution.We have empirically evaluated the framework on a dataset with 5000 questions. Our system surpasses state-of-the-art scores for entity linking task by reporting an accuracy of 0.65 to 0.40 from the next best entity linker.