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Processing giga-pixel whole slide histopathology images (WSI) is a computationally expensive task. Multiple instance learning (MIL) has become the conventional approach to process WSIs, in which these images are split into smaller patches for further processing. However, MIL-based techniques ignore explicit information about the individual cells within a patch. In this paper, by defining the novel concept of shared-context processing, we designed a multi-modal Graph Transformer (AMIGO) that uses the celluar graph within the tissue to provide a single representation for a patient while taking advantage of the hierarchical structure of the tissue, enabling a dynamic focus between cell-level and tissue-level information. We benchmarked the performance of our model against multiple state-of-the-art methods in survival prediction and showed that ours can significantly outperform all of them including hierarchical Vision Transformer (ViT). More importantly, we show that our model is strongly robust to missing information to an extent that it can achieve the same performance with as low as 20% of the data. Finally, in two different cancer datasets, we demonstrated that our model was able to stratify the patients into low-risk and high-risk groups while other state-of-the-art methods failed to achieve this goal. We also publish a large dataset of immunohistochemistry images (InUIT) containing 1,600 tissue microarray (TMA) cores from 188 patients along with their survival information, making it one of the largest publicly available datasets in this context.

Continual learning (CL) aims to incrementally learn different tasks (such as classification) in a non-stationary data stream without forgetting old ones. Most CL works focus on tackling catastrophic forgetting under a learning-from-scratch paradigm. However, with the increasing prominence of foundation models, pre-trained models equipped with informative representations have become available for various downstream requirements. Several CL methods based on pre-trained models have been explored, either utilizing pre-extracted features directly (which makes bridging distribution gaps challenging) or incorporating adaptors (which may be subject to forgetting). In this paper, we propose a concise and effective approach for CL with pre-trained models. Given that forgetting occurs during parameter updating, we contemplate an alternative approach that exploits training-free random projectors and class-prototype accumulation, which thus bypasses the issue. Specifically, we inject a frozen Random Projection layer with nonlinear activation between the pre-trained model's feature representations and output head, which captures interactions between features with expanded dimensionality, providing enhanced linear separability for class-prototype-based CL. We also demonstrate the importance of decorrelating the class-prototypes to reduce the distribution disparity when using pre-trained representations. These techniques prove to be effective and circumvent the problem of forgetting for both class- and domain-incremental continual learning. Compared to previous methods applied to pre-trained ViT-B/16 models, we reduce final error rates by between 10\% and 62\% on seven class-incremental benchmark datasets, despite not using any rehearsal memory. We conclude that the full potential of pre-trained models for simple, effective, and fast continual learning has not hitherto been fully tapped.

Knowledge graph embeddings (KGE) have been extensively studied to embed large-scale relational data for many real-world applications. Existing methods have long ignored the fact many KGs contain two fundamentally different views: high-level ontology-view concepts and fine-grained instance-view entities. They usually embed all nodes as vectors in one latent space. However, a single geometric representation fails to capture the structural differences between two views and lacks probabilistic semantics towards concepts' granularity. We propose Concept2Box, a novel approach that jointly embeds the two views of a KG using dual geometric representations. We model concepts with box embeddings, which learn the hierarchy structure and complex relations such as overlap and disjoint among them. Box volumes can be interpreted as concepts' granularity. Different from concepts, we model entities as vectors. To bridge the gap between concept box embeddings and entity vector embeddings, we propose a novel vector-to-box distance metric and learn both embeddings jointly. Experiments on both the public DBpedia KG and a newly-created industrial KG showed the effectiveness of Concept2Box.

Quasars experiencing strong lensing offer unique viewpoints on subjects like the cosmic expansion rate, the dark matter profile within the foreground deflectors, and the quasar host galaxies. Unfortunately, identifying them in astronomical images is challenging since they are overwhelmed by the abundance of non-lenses. To address this, we have developed a novel approach by ensembling cutting-edge convolutional networks (CNNs) -- i.e., ResNet, Inception, NASNet, MobileNet, EfficientNet, and RegNet -- along with vision transformers (ViTs) trained on realistic galaxy-quasar lens simulations based on the Hyper Suprime-Cam (HSC) multiband images. While the individual model exhibits remarkable performance when evaluated against the test dataset, achieving an area under the receiver operating characteristic curve of $>$97.4% and a median false positive rate of 3.1%, it struggles to generalize in real data, indicated by numerous spurious sources picked by each classifier. A significant improvement is achieved by averaging these CNNs and ViTs, resulting in the impurities being downsized by factors up to 40. Subsequently, combining the HSC images with the UKIRT, VISTA, and unWISE data, we retrieve approximately 60 million sources as parent samples and reduce this to 892,609 after employing a photometry preselection to discover $z>1.5$ lensed quasars with Einstein radii of $\theta_\mathrm{E}<5$ arcsec. Afterward, the ensemble classifier indicates 3991 sources with a high probability of being lenses, for which we visually inspect, yielding 161 prevailing candidates awaiting spectroscopic confirmation. These outcomes suggest that automated deep learning pipelines hold great potential in effectively detecting strong lenses in vast datasets with minimal manual visual inspection involved.

This work builds together two popular blocks of neural architecture, namely convolutional layers and Transformers, for large language models (LLMs). Non-causal conformers are used ubiquitously in automatic speech recognition. This work aims to adapt these architectures in a causal setup for training LLMs. Transformers decoders effectively capture long-range dependencies over several modalities and form a core backbone of modern advancements in machine learning. Convolutional architectures have been popular in extracting features in domains such as raw 1-D signals, speech, and images, to name a few. In this paper, by combining local and global dependencies over latent representations using causal convolutional filters and Transformer, we achieve significant gains in performance. This work showcases a robust speech architecture that can be integrated and adapted in a causal setup beyond speech applications for large-scale language modeling.

With the rise of powerful pre-trained vision-language models like CLIP, it becomes essential to investigate ways to adapt these models to downstream datasets. A recently proposed method named Context Optimization (CoOp) introduces the concept of prompt learning -- a recent trend in NLP -- to the vision domain for adapting pre-trained vision-language models. Specifically, CoOp turns context words in a prompt into a set of learnable vectors and, with only a few labeled images for learning, can achieve huge improvements over intensively-tuned manual prompts. In our study we identify a critical problem of CoOp: the learned context is not generalizable to wider unseen classes within the same dataset, suggesting that CoOp overfits base classes observed during training. To address the problem, we propose Conditional Context Optimization (CoCoOp), which extends CoOp by further learning a lightweight neural network to generate for each image an input-conditional token (vector). Compared to CoOp's static prompts, our dynamic prompts adapt to each instance and are thus less sensitive to class shift. Extensive experiments show that CoCoOp generalizes much better than CoOp to unseen classes, even showing promising transferability beyond a single dataset; and yields stronger domain generalization performance as well. Code is available at //github.com/KaiyangZhou/CoOp.

Transformer, an attention-based encoder-decoder architecture, has revolutionized the field of natural language processing. Inspired by this significant achievement, some pioneering works have recently been done on adapting Transformerliked architectures to Computer Vision (CV) fields, which have demonstrated their effectiveness on various CV tasks. Relying on competitive modeling capability, visual Transformers have achieved impressive performance on multiple benchmarks such as ImageNet, COCO, and ADE20k as compared with modern Convolution Neural Networks (CNN). In this paper, we have provided a comprehensive review of over one hundred different visual Transformers for three fundamental CV tasks (classification, detection, and segmentation), where a taxonomy is proposed to organize these methods according to their motivations, structures, and usage scenarios. Because of the differences in training settings and oriented tasks, we have also evaluated these methods on different configurations for easy and intuitive comparison instead of only various benchmarks. Furthermore, we have revealed a series of essential but unexploited aspects that may empower Transformer to stand out from numerous architectures, e.g., slack high-level semantic embeddings to bridge the gap between visual and sequential Transformers. Finally, three promising future research directions are suggested for further investment.

Pre-trained models learn contextualized word representations on large-scale text corpus through a self-supervised learning method, which has achieved promising performance after fine-tuning. These models, however, suffer from poor robustness and lack of interpretability. Pre-trained models with knowledge injection, which we call knowledge enhanced pre-trained models (KEPTMs), possess deep understanding and logical reasoning and introduce interpretability to some extent. In this survey, we provide a comprehensive overview of KEPTMs for natural language processing. We first introduce the progress of pre-trained models and knowledge representation learning. Then we systematically categorize existing KEPTMs from three different perspectives. Finally, we outline some potential directions of KEPTMs for future research.

Data in Knowledge Graphs often represents part of the current state of the real world. Thus, to stay up-to-date the graph data needs to be updated frequently. To utilize information from Knowledge Graphs, many state-of-the-art machine learning approaches use embedding techniques. These techniques typically compute an embedding, i.e., vector representations of the nodes as input for the main machine learning algorithm. If a graph update occurs later on -- specifically when nodes are added or removed -- the training has to be done all over again. This is undesirable, because of the time it takes and also because downstream models which were trained with these embeddings have to be retrained if they change significantly. In this paper, we investigate embedding updates that do not require full retraining and evaluate them in combination with various embedding models on real dynamic Knowledge Graphs covering multiple use cases. We study approaches that place newly appearing nodes optimally according to local information, but notice that this does not work well. However, we find that if we continue the training of the old embedding, interleaved with epochs during which we only optimize for the added and removed parts, we obtain good results in terms of typical metrics used in link prediction. This performance is obtained much faster than with a complete retraining and hence makes it possible to maintain embeddings for dynamic Knowledge Graphs.

Pre-trained deep neural network language models such as ELMo, GPT, BERT and XLNet have recently achieved state-of-the-art performance on a variety of language understanding tasks. However, their size makes them impractical for a number of scenarios, especially on mobile and edge devices. In particular, the input word embedding matrix accounts for a significant proportion of the model's memory footprint, due to the large input vocabulary and embedding dimensions. Knowledge distillation techniques have had success at compressing large neural network models, but they are ineffective at yielding student models with vocabularies different from the original teacher models. We introduce a novel knowledge distillation technique for training a student model with a significantly smaller vocabulary as well as lower embedding and hidden state dimensions. Specifically, we employ a dual-training mechanism that trains the teacher and student models simultaneously to obtain optimal word embeddings for the student vocabulary. We combine this approach with learning shared projection matrices that transfer layer-wise knowledge from the teacher model to the student model. Our method is able to compress the BERT_BASE model by more than 60x, with only a minor drop in downstream task metrics, resulting in a language model with a footprint of under 7MB. Experimental results also demonstrate higher compression efficiency and accuracy when compared with other state-of-the-art compression techniques.