Ecologists increasingly rely on Bayesian methods to fit capture-recapture models. Capture-recapture models are used to estimate abundance while accounting for imperfect detectability in individual-level data. A variety of implementations exist for such models, including integrated likelihood, parameter-expanded data augmentation, and combinations of those. Capture-recapture models with latent random effects can be computationally intensive to fit using conventional Bayesian algorithms. We identify alternative specifications of capture-recapture models by considering a conditional representation of the model structure. The resulting alternative model can be specified in a way that leads to more stable computation and allows us to fit the desired model in stages while leveraging parallel computing resources. Our model specification includes a component for the capture history of detected individuals and another component for the sample size which is random before observed. We demonstrate this approach using three examples including simulation and two data sets resulting from capture-recapture studies of different species.
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ACM/IEEE第23屆模型驅動工程語言和系統國際會議，是模型驅動軟件和系統工程的首要會議系列，由ACM-SIGSOFT和IEEE-TCSE支持組織。自1998年以來，模型涵蓋了建模的各個方面，從語言和方法到工具和應用程序。模特的參加者來自不同的背景，包括研究人員、學者、工程師和工業專業人士。MODELS 2019是一個論壇，參與者可以圍繞建模和模型驅動的軟件和系統交流前沿研究成果和創新實踐經驗。今年的版本將為建模社區提供進一步推進建模基礎的機會，并在網絡物理系統、嵌入式系統、社會技術系統、云計算、大數據、機器學習、安全、開源等新興領域提出建模的創新應用以及可持續性。
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Machine learning techniques have successfully been used to extract structural information such as the crystal space group from powder X-ray diffractograms. However, training directly on simulated diffractograms from databases such as the ICSD is challenging due to its limited size, class-inhomogeneity, and bias toward certain structure types. We propose an alternative approach of generating synthetic crystals with random coordinates by using the symmetry operations of each space group. Based on this approach, we demonstrate online training of deep ResNet-like models on up to a few million unique on-the-fly generated synthetic diffractograms per hour. For our chosen task of space group classification, we achieved a test accuracy of 79.9% on unseen ICSD structure types from most space groups. This surpasses the 56.1% accuracy of the current state-of-the-art approach of training on ICSD crystals directly. Our results demonstrate that synthetically generated crystals can be used to extract structural information from ICSD powder diffractograms, which makes it possible to apply very large state-of-the-art machine learning models in the area of powder X-ray diffraction. We further show first steps toward applying our methodology to experimental data, where automated XRD data analysis is crucial, especially in high-throughput settings. While we focused on the prediction of the space group, our approach has the potential to be extended to related tasks in the future.
Hierarchical learning algorithms that gradually approximate a solution to a data-driven optimization problem are essential to decision-making systems, especially under limitations on time and computational resources. In this study, we introduce a general-purpose hierarchical learning architecture that is based on the progressive partitioning of a possibly multi-resolution data space. The optimal partition is gradually approximated by solving a sequence of optimization sub-problems that yield a sequence of partitions with increasing number of subsets. We show that the solution of each optimization problem can be estimated online using gradient-free stochastic approximation updates. As a consequence, a function approximation problem can be defined within each subset of the partition and solved using the theory of two-timescale stochastic approximation algorithms. This simulates an annealing process and defines a robust and interpretable heuristic method to gradually increase the complexity of the learning architecture in a task-agnostic manner, giving emphasis to regions of the data space that are considered more important according to a predefined criterion. Finally, by imposing a tree structure in the progression of the partitions, we provide a means to incorporate potential multi-resolution structure of the data space into this approach, significantly reducing its complexity, while introducing hierarchical variable-rate feature extraction properties similar to certain classes of deep learning architectures. Asymptotic convergence analysis and experimental results are provided for supervised and unsupervised learning problems.
The recent explosion of high-quality image-to-image methods has prompted interest in applying image-to-image methods towards artistic and design tasks. Of interest for architects is to use these methods to generate design proposals from conceptual sketches, usually hand-drawn sketches that are quickly developed and can embody a design intent. More specifically, instantiating a sketch into a visual that can be used to elicit client feedback is typically a time consuming task, and being able to speed up this iteration time is important. While the body of work in generative methods has been impressive, there has been a mismatch between the quality measures used to evaluate the outputs of these systems and the actual expectations of architects. In particular, most recent image-based works place an emphasis on realism of generated images. While important, this is one of several criteria architects look for. In this work, we describe the expectations architects have for design proposals from conceptual sketches, and identify corresponding automated metrics from the literature. We then evaluate several image-to-image generative methods that may address these criteria and examine their performance across these metrics. From these results, we identify certain challenges with hand-drawn conceptual sketches and describe possible future avenues of investigation to address them.
Tiny object detection has become an active area of research because images with tiny targets are common in several important real-world scenarios. However, existing tiny object detection methods use standard deep neural networks as their backbone architecture. We argue that such backbones are inappropriate for detecting tiny objects as they are designed for the classification of larger objects, and do not have the spatial resolution to identify small targets. Specifically, such backbones use max-pooling or a large stride at early stages in the architecture. This produces lower resolution feature-maps that can be efficiently processed by subsequent layers. However, such low-resolution feature-maps do not contain information that can reliably discriminate tiny objects. To solve this problem we design 'bottom-heavy' versions of backbones that allocate more resources to processing higher-resolution features without introducing any additional computational burden overall. We also investigate if pre-training these backbones on images of appropriate size, using CIFAR100 and ImageNet32, can further improve performance on tiny object detection. Results on TinyPerson and WiderFace show that detectors with our proposed backbones achieve better results than the current state-of-the-art methods.
This paper describes a technique for using magnetic motion capture data to determine the joint parameters of an articulated hierarchy. This technique makes it possible to determine limb lengths, joint locations, and sensor placement for a human subject without external measurements. Instead, the joint parameters are inferred with high accuracy from the motion data acquired during the capture session. The parameters are computed by performing a linear least squares fit of a rotary joint model to the input data. A hierarchical structure for the articulated model can also be determined in situations where the topology of the model is not known. Once the system topology and joint parameters have been recovered, the resulting model can be used to perform forward and inverse kinematic procedures. We present the results of using the algorithm on human motion capture data, as well as validation results obtained with data from a simulation and a wooden linkage of known dimensions.
There has been a proliferation of descriptive for COVID-19 papers using altmetrics. The main objective of this study is to analyse whether the altmetric mentions of COVID-19 medical studies are associated with the type of study and its level of evidence. Data were collected from PubMed and Altmetric.com databases. A total of 16,672 study types (e.g., Case reports or Clinical trials) published in the year 2021 and with at least one altmetric mention were retrieved. The altmetric indicators considered were Altmetric Attention Score (AAS), News mentions, Twitter mentions, and Mendeley readers. Once the dataset had been created, the first step was to carry out a descriptive study. Then a normality hypothesis was contrasted by means of the Kolmogorov-Smirnov test, and since it was significant in all cases, the overall comparison of groups was performed using the non-parametric Kruskal-Wallis test. When this test rejected the null hypothesis, pair-by-pair comparisons were performed with the Mann-Whitney U test, and the intensity of the possible association was measured using Cramers V coefficient. The results suggest that the data do not fit a normal distribution. The Mann-Whitney U test revealed coincidences in five groups of study types, the altmetric indicator with most coincidences being news mentions and the study types with the most coincidences were the systematic reviews together with the meta-analyses, which coincided with four altmetric indicators. Likewise, between the study types and the altmetric indicators, a weak but significant association was observed through the chi-square and Cramers V. It is concluded that the positive association between altmetrics and study types in medicine could reflect the level of the pyramid of scientific evidence.
It has been a long time that computer architecture and systems are optimized to enable efficient execution of machine learning (ML) algorithms or models. Now, it is time to reconsider the relationship between ML and systems, and let ML transform the way that computer architecture and systems are designed. This embraces a twofold meaning: the improvement of designers' productivity, and the completion of the virtuous cycle. In this paper, we present a comprehensive review of work that applies ML for system design, which can be grouped into two major categories, ML-based modelling that involves predictions of performance metrics or some other criteria of interest, and ML-based design methodology that directly leverages ML as the design tool. For ML-based modelling, we discuss existing studies based on their target level of system, ranging from the circuit level to the architecture/system level. For ML-based design methodology, we follow a bottom-up path to review current work, with a scope of (micro-)architecture design (memory, branch prediction, NoC), coordination between architecture/system and workload (resource allocation and management, data center management, and security), compiler, and design automation. We further provide a future vision of opportunities and potential directions, and envision that applying ML for computer architecture and systems would thrive in the community.
Graph Neural Networks (GNNs), which generalize deep neural networks to graph-structured data, have drawn considerable attention and achieved state-of-the-art performance in numerous graph related tasks. However, existing GNN models mainly focus on designing graph convolution operations. The graph pooling (or downsampling) operations, that play an important role in learning hierarchical representations, are usually overlooked. In this paper, we propose a novel graph pooling operator, called Hierarchical Graph Pooling with Structure Learning (HGP-SL), which can be integrated into various graph neural network architectures. HGP-SL incorporates graph pooling and structure learning into a unified module to generate hierarchical representations of graphs. More specifically, the graph pooling operation adaptively selects a subset of nodes to form an induced subgraph for the subsequent layers. To preserve the integrity of graph's topological information, we further introduce a structure learning mechanism to learn a refined graph structure for the pooled graph at each layer. By combining HGP-SL operator with graph neural networks, we perform graph level representation learning with focus on graph classification task. Experimental results on six widely used benchmarks demonstrate the effectiveness of our proposed model.
Deep neural network architectures have traditionally been designed and explored with human expertise in a long-lasting trial-and-error process. This process requires huge amount of time, expertise, and resources. To address this tedious problem, we propose a novel algorithm to optimally find hyperparameters of a deep network architecture automatically. We specifically focus on designing neural architectures for medical image segmentation task. Our proposed method is based on a policy gradient reinforcement learning for which the reward function is assigned a segmentation evaluation utility (i.e., dice index). We show the efficacy of the proposed method with its low computational cost in comparison with the state-of-the-art medical image segmentation networks. We also present a new architecture design, a densely connected encoder-decoder CNN, as a strong baseline architecture to apply the proposed hyperparameter search algorithm. We apply the proposed algorithm to each layer of the baseline architectures. As an application, we train the proposed system on cine cardiac MR images from Automated Cardiac Diagnosis Challenge (ACDC) MICCAI 2017. Starting from a baseline segmentation architecture, the resulting network architecture obtains the state-of-the-art results in accuracy without performing any trial-and-error based architecture design approaches or close supervision of the hyperparameters changes.
Video captioning is the task of automatically generating a textual description of the actions in a video. Although previous work (e.g. sequence-to-sequence model) has shown promising results in abstracting a coarse description of a short video, it is still very challenging to caption a video containing multiple fine-grained actions with a detailed description. This paper aims to address the challenge by proposing a novel hierarchical reinforcement learning framework for video captioning, where a high-level Manager module learns to design sub-goals and a low-level Worker module recognizes the primitive actions to fulfill the sub-goal. With this compositional framework to reinforce video captioning at different levels, our approach significantly outperforms all the baseline methods on a newly introduced large-scale dataset for fine-grained video captioning. Furthermore, our non-ensemble model has already achieved the state-of-the-art results on the widely-used MSR-VTT dataset.
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