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Unobserved confounding is common in many applications, making causal inference from observational data challenging. As a remedy, causal sensitivity analysis is an important tool to draw causal conclusions under unobserved confounding with mathematical guarantees. In this paper, we propose NeuralCSA, a neural framework for generalized causal sensitivity analysis. Unlike previous work, our framework is compatible with (i) a large class of sensitivity models, including the marginal sensitivity model, f-sensitivity models, and Rosenbaum's sensitivity model; (ii) different treatment types (i.e., binary and continuous); and (iii) different causal queries, including (conditional) average treatment effects and simultaneous effects on multiple outcomes. The generality of \frameworkname is achieved by learning a latent distribution shift that corresponds to a treatment intervention using two conditional normalizing flows. We provide theoretical guarantees that NeuralCSA is able to infer valid bounds on the causal query of interest and also demonstrate this empirically using both simulated and real-world data.

We revisit the fundamental problem of learning with distribution shift, in which a learner is given labeled samples from training distribution $D$, unlabeled samples from test distribution $D'$ and is asked to output a classifier with low test error. The standard approach in this setting is to bound the loss of a classifier in terms of some notion of distance between $D$ and $D'$. These distances, however, seem difficult to compute and do not lead to efficient algorithms. We depart from this paradigm and define a new model called testable learning with distribution shift, where we can obtain provably efficient algorithms for certifying the performance of a classifier on a test distribution. In this model, a learner outputs a classifier with low test error whenever samples from $D$ and $D'$ pass an associated test; moreover, the test must accept if the marginal of $D$ equals the marginal of $D'$. We give several positive results for learning well-studied concept classes such as halfspaces, intersections of halfspaces, and decision trees when the marginal of $D$ is Gaussian or uniform on $\{\pm 1\}^d$. Prior to our work, no efficient algorithms for these basic cases were known without strong assumptions on $D'$. For halfspaces in the realizable case (where there exists a halfspace consistent with both $D$ and $D'$), we combine a moment-matching approach with ideas from active learning to simulate an efficient oracle for estimating disagreement regions. To extend to the non-realizable setting, we apply recent work from testable (agnostic) learning. More generally, we prove that any function class with low-degree $L_2$-sandwiching polynomial approximators can be learned in our model. We apply constructions from the pseudorandomness literature to obtain the required approximators.

Cycles are fundamental elements in graph-structured data and have demonstrated their effectiveness in enhancing graph learning models. To encode such information into a graph learning framework, prior works often extract a summary quantity, ranging from the number of cycles to the more sophisticated persistence diagram summaries. However, more detailed information, such as which edges are encoded in a cycle, has not yet been used in graph neural networks. In this paper, we make one step towards addressing this gap, and propose a structure encoding module, called CycleNet, that encodes cycle information via edge structure encoding in a permutation invariant manner. To efficiently encode the space of all cycles, we start with a cycle basis (i.e., a minimal set of cycles generating the cycle space) which we compute via the kernel of the 1-dimensional Hodge Laplacian of the input graph. To guarantee the encoding is invariant w.r.t. the choice of cycle basis, we encode the cycle information via the orthogonal projector of the cycle basis, which is inspired by BasisNet proposed by Lim et al. We also develop a more efficient variant which however requires that the input graph has a unique shortest cycle basis. To demonstrate the effectiveness of the proposed module, we provide some theoretical understandings of its expressive power. Moreover, we show via a range of experiments that networks enhanced by our CycleNet module perform better in various benchmarks compared to several existing SOTA models.

In conventional randomized controlled trials, adjustment for baseline values of covariates known to be at least moderately associated with the outcome increases the power of the trial. Recent work has shown particular benefit for more flexible frequentist designs, such as information adaptive and adaptive multi-arm designs. However, covariate adjustment has not been characterized within the more flexible Bayesian adaptive designs, despite their growing popularity. We focus on a subclass of these which allow for early stopping at an interim analysis given evidence of treatment superiority. We consider both collapsible and non-collapsible estimands, and show how to obtain posterior samples of marginal estimands from adjusted analyses. We describe several estimands for three common outcome types. We perform a simulation study to assess the impact of covariate adjustment using a variety of adjustment models in several different scenarios. This is followed by a real world application of the compared approaches to a COVID-19 trial with a binary endpoint. For all scenarios, it is shown that covariate adjustment increases power and the probability of stopping the trials early, and decreases the expected sample sizes as compared to unadjusted analyses.

We introduce a novel dynamic learning-rate scheduling scheme grounded in theory with the goal of simplifying the manual and time-consuming tuning of schedules in practice. Our approach is based on estimating the locally-optimal stepsize, guaranteeing maximal descent in the direction of the stochastic gradient of the current step. We first establish theoretical convergence bounds for our method within the context of smooth non-convex stochastic optimization, matching state-of-the-art bounds while only assuming knowledge of the smoothness parameter. We then present a practical implementation of our algorithm and conduct systematic experiments across diverse datasets and optimization algorithms, comparing our scheme with existing state-of-the-art learning-rate schedulers. Our findings indicate that our method needs minimal tuning when compared to existing approaches, removing the need for auxiliary manual schedules and warm-up phases and achieving comparable performance with drastically reduced parameter tuning.

Emerging from the monolithic pairwise attention mechanism in conventional Transformer models, there is a growing interest in leveraging sparse interactions that align more closely with biological principles. Approaches including the Set Transformer and the Perceiver employ cross-attention consolidated with a latent space that forms an attention bottleneck with limited capacity. Building upon recent neuroscience studies of Global Workspace Theory and associative memory, we propose the Associative Transformer (AiT). AiT induces low-rank explicit memory that serves as both priors to guide bottleneck attention in the shared workspace and attractors within associative memory of a Hopfield network. Through joint end-to-end training, these priors naturally develop module specialization, each contributing a distinct inductive bias to form attention bottlenecks. A bottleneck can foster competition among inputs for writing information into the memory. We show that AiT is a sparse representation learner, learning distinct priors through the bottlenecks that are complexity-invariant to input quantities and dimensions. AiT demonstrates its superiority over methods such as the Set Transformer, Vision Transformer, and Coordination in various vision tasks.

The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an increasing interest in the adaptive processing of graphs, which led to the development of different neural network-based methodologies. In this thesis, we take a different route and develop a Bayesian Deep Learning framework for graph learning. The dissertation begins with a review of the principles over which most of the methods in the field are built, followed by a study on graph classification reproducibility issues. We then proceed to bridge the basic ideas of deep learning for graphs with the Bayesian world, by building our deep architectures in an incremental fashion. This framework allows us to consider graphs with discrete and continuous edge features, producing unsupervised embeddings rich enough to reach the state of the art on several classification tasks. Our approach is also amenable to a Bayesian nonparametric extension that automatizes the choice of almost all model's hyper-parameters. Two real-world applications demonstrate the efficacy of deep learning for graphs. The first concerns the prediction of information-theoretic quantities for molecular simulations with supervised neural models. After that, we exploit our Bayesian models to solve a malware-classification task while being robust to intra-procedural code obfuscation techniques. We conclude the dissertation with an attempt to blend the best of the neural and Bayesian worlds together. The resulting hybrid model is able to predict multimodal distributions conditioned on input graphs, with the consequent ability to model stochasticity and uncertainty better than most works. Overall, we aim to provide a Bayesian perspective into the articulated research field of deep learning for graphs.

Analyzing observational data from multiple sources can be useful for increasing statistical power to detect a treatment effect; however, practical constraints such as privacy considerations may restrict individual-level information sharing across data sets. This paper develops federated methods that only utilize summary-level information from heterogeneous data sets. Our federated methods provide doubly-robust point estimates of treatment effects as well as variance estimates. We derive the asymptotic distributions of our federated estimators, which are shown to be asymptotically equivalent to the corresponding estimators from the combined, individual-level data. We show that to achieve these properties, federated methods should be adjusted based on conditions such as whether models are correctly specified and stable across heterogeneous data sets.

We advocate the use of implicit fields for learning generative models of shapes and introduce an implicit field decoder for shape generation, aimed at improving the visual quality of the generated shapes. An implicit field assigns a value to each point in 3D space, so that a shape can be extracted as an iso-surface. Our implicit field decoder is trained to perform this assignment by means of a binary classifier. Specifically, it takes a point coordinate, along with a feature vector encoding a shape, and outputs a value which indicates whether the point is outside the shape or not. By replacing conventional decoders by our decoder for representation learning and generative modeling of shapes, we demonstrate superior results for tasks such as shape autoencoding, generation, interpolation, and single-view 3D reconstruction, particularly in terms of visual quality.

Deep neural networks (DNNs) have been found to be vulnerable to adversarial examples resulting from adding small-magnitude perturbations to inputs. Such adversarial examples can mislead DNNs to produce adversary-selected results. Different attack strategies have been proposed to generate adversarial examples, but how to produce them with high perceptual quality and more efficiently requires more research efforts. In this paper, we propose AdvGAN to generate adversarial examples with generative adversarial networks (GANs), which can learn and approximate the distribution of original instances. For AdvGAN, once the generator is trained, it can generate adversarial perturbations efficiently for any instance, so as to potentially accelerate adversarial training as defenses. We apply AdvGAN in both semi-whitebox and black-box attack settings. In semi-whitebox attacks, there is no need to access the original target model after the generator is trained, in contrast to traditional white-box attacks. In black-box attacks, we dynamically train a distilled model for the black-box model and optimize the generator accordingly. Adversarial examples generated by AdvGAN on different target models have high attack success rate under state-of-the-art defenses compared to other attacks. Our attack has placed the first with 92.76% accuracy on a public MNIST black-box attack challenge.