Computer-based simulations of non-invasive cardiac electrical outputs, such as electrocardiograms and body surface potential maps, usually entail severe computational costs due to the need of capturing fine-scale processes and to the complexity of the heart-torso morphology. In this work, we model cardiac electrical outputs by employing a coupled model consisting of a reaction-diffusion model - either the bidomain model or the most efficient pseudo-bidomain model - on the heart, and an elliptic model in the torso. We then solve the coupled problem with a segregated and staggered in-time numerical scheme, that allows for independent and infrequent solution in the torso region. To further reduce the computational load, main novelty of this work is in introduction of an interpolation method at the interface between the heart and torso domains, enabling the use of non-conforming meshes, and the numerical framework application to realistic cardiac and torso geometries. The reliability and efficiency of the proposed scheme is tested against the corresponding state-of-the-art bidomain-torso model. Furthermore, we explore the impact of torso spatial discretization and geometrical non-conformity on the model solution and the corresponding clinical outputs. The investigation of the interface interpolation method provides insights into the influence of torso spatial discretization and of the geometrical non-conformity on the simulation results and their clinical relevance.
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ACM/IEEE第23屆模型驅動工程語言和系統國際會議，是模型驅動軟件和系統工程的首要會議系列，由ACM-SIGSOFT和IEEE-TCSE支持組織。自1998年以來，模型涵蓋了建模的各個方面，從語言和方法到工具和應用程序。模特的參加者來自不同的背景，包括研究人員、學者、工程師和工業專業人士。MODELS 2019是一個論壇，參與者可以圍繞建模和模型驅動的軟件和系統交流前沿研究成果和創新實踐經驗。今年的版本將為建模社區提供進一步推進建模基礎的機會，并在網絡物理系統、嵌入式系統、社會技術系統、云計算、大數據、機器學習、安全、開源等新興領域提出建模的創新應用以及可持續性。
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Bayesian optimization (BO), while proved highly effective for many black-box function optimization tasks, requires practitioners to carefully select priors that well model their functions of interest. Rather than specifying by hand, researchers have investigated transfer learning based methods to automatically learn the priors, e.g. multi-task BO (Swersky et al., 2013), few-shot BO (Wistuba and Grabocka, 2021) and HyperBO (Wang et al., 2022). However, those prior learning methods typically assume that the input domains are the same for all tasks, weakening their ability to use observations on functions with different domains or generalize the learned priors to BO on different search spaces. In this work, we present HyperBO+: a pre-training approach for hierarchical Gaussian processes that enables the same prior to work universally for Bayesian optimization on functions with different domains. We propose a two-step pre-training method and analyze its appealing asymptotic properties and benefits to BO both theoretically and empirically. On real-world hyperparameter tuning tasks that involve multiple search spaces, we demonstrate that HyperBO+ is able to generalize to unseen search spaces and achieves lower regrets than competitive baselines.
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We show how quantum-inspired 2d tensor networks can be used to efficiently and accurately simulate the largest quantum processors from IBM, namely Eagle (127 qubits), Osprey (433 qubits) and Condor (1121 qubits). We simulate the dynamics of a complex quantum many-body system -- specifically, the kicked Ising experiment considered recently by IBM in Nature 618, p. 500-505 (2023) -- using graph-based Projected Entangled Pair States (gPEPS), which was proposed by some of us in PRB 99, 195105 (2019). Our results show that simple tensor updates are already sufficient to achieve very large unprecedented accuracy with remarkably low computational resources for this model. Apart from simulating the original experiment for 127 qubits, we also extend our results to 433 and 1121 qubits, thus setting a benchmark for the newest IBM quantum machines. We also report accurate simulations for infinitely-many qubits. Our results show that gPEPS are a natural tool to efficiently simulate quantum computers with an underlying lattice-based qubit connectivity, such as all quantum processors based on superconducting qubits.
We consider multi-variate signals spanned by the integer shifts of a set of generating functions with distinct frequency profiles and the problem of reconstructing them from samples taken on a random periodic set. We show that such a sampling strategy succeeds with high probability provided that the density of the sampling pattern exceeds the number of frequency profiles by a logarithmic factor. The signal model includes bandlimited functions with multi-band spectra. While in this well-studied setting delicate constructions provide sampling strategies that meet the information theoretic benchmark of Shannon and Landau, the sampling pattern that we consider provides, at the price of a logarithmic oversampling factor, a simple alternative that is accompanied by favorable a priori stability margins (snug frames). More generally, we also treat bandlimited functions with arbitrary compact spectra, and different measures of its complexity and approximation rates by integer tiles. At the technical level, we elaborate on recent work on relevant sampling, with the key difference that the reconstruction guarantees that we provide hold uniformly for all signals, rather than for a subset of well-concentrated ones. This is achieved by methods of concentration of measure formulated on the Zak domain.
The Linguistic Matrix Theory programme introduced by Kartsaklis, Ramgoolam and Sadrzadeh is an approach to the statistics of matrices that are generated in type-driven distributional semantics, based on permutation invariant polynomial functions which are regarded as the key observables encoding the significant statistics. In this paper we generalize the previous results on the approximate Gaussianity of matrix distributions arising from compositional distributional semantics. We also introduce a geometry of observable vectors for words, defined by exploiting the graph-theoretic basis for the permutation invariants and the statistical characteristics of the ensemble of matrices associated with the words. We describe successful applications of this unified framework to a number of tasks in computational linguistics, associated with the distinctions between synonyms, antonyms, hypernyms and hyponyms.
Phylogenetic and discrete-trait evolutionary inference depend heavily on an appropriate characterization of the underlying character substitution process. In this paper, we present random-effects substitution models that extend common continuous-time Markov chain models into a richer class of processes capable of capturing a wider variety of substitution dynamics. As these random-effects substitution models often require many more parameters than their usual counterparts, inference can be both statistically and computationally challenging. Thus, we also propose an efficient approach to compute an approximation to the gradient of the data likelihood with respect to all unknown substitution model parameters. We demonstrate that this approximate gradient enables scaling of sampling-based inference, namely Bayesian inference via Hamiltonian Monte Carlo, under random-effects substitution models across large trees and state-spaces. Applied to a dataset of 583 SARS-CoV-2 sequences, an HKY model with random-effects shows strong signals of nonreversibility in the substitution process, and posterior predictive model checks clearly show that it is a more adequate model than a reversible model. When analyzing the pattern of phylogeographic spread of 1441 influenza A virus (H3N2) sequences between 14 regions, a random-effects phylogeographic substitution model infers that air travel volume adequately predicts almost all dispersal rates. A random-effects state-dependent substitution model reveals no evidence for an effect of arboreality on the swimming mode in the tree frog subfamily Hylinae. Simulations reveal that random-effects substitution models can accommodate both negligible and radical departures from the underlying base substitution model. We show that our gradient-based inference approach is over an order of magnitude more time efficient than conventional approaches.
This note presents a refined local approximation for the logarithm of the ratio between the negative multinomial probability mass function and a multivariate normal density, both having the same mean-covariance structure. This approximation, which is derived using Stirling's formula and a meticulous treatment of Taylor expansions, yields an upper bound on the Hellinger distance between the jittered negative multinomial distribution and the corresponding multivariate normal distribution. Upper bounds on the Le Cam distance between negative multinomial and multivariate normal experiments ensue.
We consider the problem of recovering a latent graph where the observations at each node are \emph{aliased}, and transitions are stochastic. Observations are gathered by an agent traversing the graph. Aliasing means that multiple nodes emit the same observation, so the agent can not know in which node it is located. The agent needs to uncover the hidden topology as accurately as possible and in as few steps as possible. This is equivalent to efficient recovery of the transition probabilities of a partially observable Markov decision process (POMDP) in which the observation probabilities are known. An algorithm for efficiently exploring (and ultimately recovering) the latent graph is provided. Our approach is exponentially faster than naive exploration in a variety of challenging topologies with aliased observations while remaining competitive with existing baselines in the unaliased regime.
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