Most work in relation extraction forms a prediction by looking at a short span of text within a single sentence containing a single entity pair mention. This approach often does not consider interactions across mentions, requires redundant computation for each mention pair, and ignores relationships expressed across sentence boundaries. These problems are exacerbated by the document- (rather than sentence-) level annotation common in biological text. In response, we propose a model which simultaneously predicts relationships between all mention pairs in a document. We form pairwise predictions over entire paper abstracts using an efficient self-attention encoder. All-pairs mention scores allow us to perform multi-instance learning by aggregating over mentions to form entity pair representations. We further adapt to settings without mention-level annotation by jointly training to predict named entities and adding a corpus of weakly labeled data. In experiments on two Biocreative benchmark datasets, we achieve state of the art performance on the Biocreative V Chemical Disease Relation dataset for models without external KB resources. We also introduce a new dataset an order of magnitude larger than existing human-annotated biological information extraction datasets and more accurate than distantly supervised alternatives.
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Recent work pre-training Transformers with self-supervised objectives on large text corpora has shown great success when fine-tuned on downstream NLP tasks including text summarization. However, pre-training objectives tailored for abstractive text summarization have not been explored. Furthermore there is a lack of systematic evaluation across diverse domains. In this work, we propose pre-training large Transformer-based encoder-decoder models on massive text corpora with a new self-supervised objective. In PEGASUS, important sentences are removed/masked from an input document and are generated together as one output sequence from the remaining sentences, similar to an extractive summary. We evaluated our best PEGASUS model on 12 downstream summarization tasks spanning news, science, stories, instructions, emails, patents, and legislative bills. Experiments demonstrate it achieves state-of-the-art performance on all 12 downstream datasets measured by ROUGE scores. Our model also shows surprising performance on low-resource summarization, surpassing previous state-of-the-art results on 6 datasets with only 1000 examples. Finally we validated our results using human evaluation and show that our model summaries achieve human performance on multiple datasets.
We introduce SpERT, an attention model for span-based joint entity and relation extraction. Our approach employs the pre-trained Transformer network BERT as its core. We use BERT embeddings as shared inputs for a light-weight reasoning, which features entity recognition and filtering, as well as relation classification with a localized, marker-free context representation. The model is trained on strong within-sentence negative samples, which are efficiently extracted in a single BERT pass. These aspects facilitate a search over all spans in the sentence. In ablation studies, we demonstrate the benefits of pre-training, strong negative sampling and localized context. Our model outperforms prior work by up to 5% F1 score on several datasets for joint entity and relation extraction.
We propose a distance supervised relation extraction approach for long-tailed, imbalanced data which is prevalent in real-world settings. Here, the challenge is to learn accurate "few-shot" models for classes existing at the tail of the class distribution, for which little data is available. Inspired by the rich semantic correlations between classes at the long tail and those at the head, we take advantage of the knowledge from data-rich classes at the head of the distribution to boost the performance of the data-poor classes at the tail. First, we propose to leverage implicit relational knowledge among class labels from knowledge graph embeddings and learn explicit relational knowledge using graph convolution networks. Second, we integrate that relational knowledge into relation extraction model by coarse-to-fine knowledge-aware attention mechanism. We demonstrate our results for a large-scale benchmark dataset which show that our approach significantly outperforms other baselines, especially for long-tail relations.
In this paper, we propose a span based model combined with syntactic information for n-ary open information extraction. The advantage of span model is that it can leverage span level features, which is difficult in token based BIO tagging methods. We also improve the previous bootstrap method to construct training corpus. Experiments show that our model outperforms previous open information extraction systems. Our code and data are publicly available at //github.com/zhanjunlang/Span_OIE
Information Extraction (IE) refers to automatically extracting structured relation tuples from unstructured texts. Common IE solutions, including Relation Extraction (RE) and open IE systems, can hardly handle cross-sentence tuples, and are severely restricted by limited relation types as well as informal relation specifications (e.g., free-text based relation tuples). In order to overcome these weaknesses, we propose a novel IE framework named QA4IE, which leverages the flexible question answering (QA) approaches to produce high quality relation triples across sentences. Based on the framework, we develop a large IE benchmark with high quality human evaluation. This benchmark contains 293K documents, 2M golden relation triples, and 636 relation types. We compare our system with some IE baselines on our benchmark and the results show that our system achieves great improvements.
We present a system for rapidly customizing event extraction capability to find new event types and their arguments. The system allows a user to find, expand and filter event triggers for a new event type by exploring an unannotated corpus. The system will then automatically generate mention-level event annotation automatically, and train a Neural Network model for finding the corresponding event. Additionally, the system uses the ACE corpus to train an argument model for extracting Actor, Place, and Time arguments for any event types, including ones not seen in its training data. Experiments show that with less than 10 minutes of human effort per event type, the system achieves good performance for 67 novel event types. The code, documentation, and a demonstration video will be released as open source on github.com.
Many question answering systems over knowledge graphs rely on entity and relation linking components in order to connect the natural language input to the underlying knowledge graph. Traditionally, entity linking and relation linking have been performed either as dependent sequential tasks or as independent parallel tasks. In this paper, we propose a framework called EARL, which performs entity linking and relation linking as a joint task. EARL implements two different solution strategies for which we provide a comparative analysis in this paper: The first strategy is a formalisation of the joint entity and relation linking tasks as an instance of the Generalised Travelling Salesman Problem (GTSP). In order to be computationally feasible, we employ approximate GTSP solvers. The second strategy uses machine learning in order to exploit the connection density between nodes in the knowledge graph. It relies on three base features and re-ranking steps in order to predict entities and relations. We compare the strategies and evaluate them on a dataset with 5000 questions. Both strategies significantly outperform the current state-of-the-art approaches for entity and relation linking.
We study the problem of textual relation embedding with distant supervision. To combat the wrong labeling problem of distant supervision, we propose to embed textual relations with global statistics of relations, i.e., the co-occurrence statistics of textual and knowledge base relations collected from the entire corpus. This approach turns out to be more robust to the training noise introduced by distant supervision. On a popular relation extraction dataset, we show that the learned textual relation embedding can be used to augment existing relation extraction models and significantly improve their performance. Most remarkably, for the top 1,000 relational facts discovered by the best existing model, the precision can be improved from 83.9% to 89.3%.
The web contains countless semi-structured websites, which can be a rich source of information for populating knowledge bases. Existing methods for extracting relations from the DOM trees of semi-structured webpages can achieve high precision and recall only when manual annotations for each website are available. Although there have been efforts to learn extractors from automatically-generated labels, these methods are not sufficiently robust to succeed in settings with complex schemas and information-rich websites. In this paper we present a new method for automatic extraction from semi-structured websites based on distant supervision. We automatically generate training labels by aligning an existing knowledge base with a web page and leveraging the unique structural characteristics of semi-structured websites. We then train a classifier based on the potentially noisy and incomplete labels to predict new relation instances. Our method can compete with annotation-based techniques in the literature in terms of extraction quality. A large-scale experiment on over 400,000 pages from dozens of multi-lingual long-tail websites harvested 1.25 million facts at a precision of 90%.
Most previous event extraction studies have relied heavily on features derived from annotated event mentions, thus cannot be applied to new event types without annotation effort. In this work, we take a fresh look at event extraction and model it as a grounding problem. We design a transferable neural architecture, mapping event mentions and types jointly into a shared semantic space using structural and compositional neural networks, where the type of each event mention can be determined by the closest of all candidate types . By leveraging (1)~available manual annotations for a small set of existing event types and (2)~existing event ontologies, our framework applies to new event types without requiring additional annotation. Experiments on both existing event types (e.g., ACE, ERE) and new event types (e.g., FrameNet) demonstrate the effectiveness of our approach. \textit{Without any manual annotations} for 23 new event types, our zero-shot framework achieved performance comparable to a state-of-the-art supervised model which is trained from the annotations of 500 event mentions.
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