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Organ segmentation is a fundamental task in medical imaging, and it is useful for many clinical automation pipelines. Typically, the process involves segmenting the entire volume, which can be unnecessary when the points of interest are limited. In those cases, a classifier could be used instead of segmentation. However, there is an inherent trade-off between the context size and the speed of classifiers. To address this issue, we propose a new method that employs a data selection strategy with sparse sampling across a wide field of view without image resampling. This sparse sampling strategy makes it possible to classify voxels into multiple organs in real time without using accelerators. Although our method is an independent classifier, it can generate full segmentation by querying grid locations at any resolution. We have compared our method with existing segmentation techniques, demonstrating its potential for superior runtime in practical applications in medical imaging.

We present the application of the physics-informed neural network (PINN) approach in Bayesian formulation. We have adopted the Bayesian neural network framework to obtain posterior densities from Laplace approximation. For each model or fit, the evidence is computed, which is a measure that classifies the hypothesis. The optimal solution is the one with the highest value of evidence. We have proposed a modification of the Bayesian algorithm to obtain hyperparameters of the model. We have shown that within the Bayesian framework, one can obtain the relative weights between the boundary and equation contributions to the total loss. Presented method leads to predictions comparable to those obtained by sampling from the posterior distribution within the Hybrid Monte Carlo algorithm (HMC). We have solved heat, wave, and Burger's equations, and the results obtained are in agreement with the exact solutions, demonstrating the effectiveness of our approach. In Burger's equation problem, we have demonstrated that the framework can combine information from differential equations and potential measurements. All solutions are provided with uncertainties (induced by the model's parameter dependence) computed within the Bayesian framework.

Ontology and knowledge graph matching systems are evaluated annually by the Ontology Alignment Evaluation Initiative (OAEI). More and more systems use machine learning-based approaches, including large language models. The training and validation datasets are usually determined by the system developer and often a subset of the reference alignments are used. This sampling is against the OAEI rules and makes a fair comparison impossible. Furthermore, those models are trained offline (a trained and optimized model is packaged into the matcher) and therefore the systems are specifically trained for those tasks. In this paper, we introduce a dataset that contains training, validation, and test sets for most of the OAEI tracks. Thus, online model learning (the systems must adapt to the given input alignment without human intervention) is made possible to enable a fair comparison for ML-based systems. We showcase the usefulness of the dataset by fine-tuning the confidence thresholds of popular systems.

To realize a global quantum Internet, there is a need for communication between quantum subnetworks. To accomplish this task, there have been multiple design proposals for a quantum backbone network and quantum subnetworks. In this work, we elaborate on the design that uses entanglement and quantum teleportation to build the quantum backbone between packetized quantum networks. We design a network interface to interconnect packetized quantum networks with entanglement-based quantum backbone networks and, moreover, design a scheme to accomplish data transmission over this hybrid quantum network model. We analyze the use of various implementations of the backbone network, focusing our study on backbone networks that use satellite links to continuously distribute entanglement resources. For feasibility, we analyze various system parameters via simulation to benchmark the performance of the overall network.

This manuscript portrays optimization as a process. In many practical applications the environment is so complex that it is infeasible to lay out a comprehensive theoretical model and use classical algorithmic theory and mathematical optimization. It is necessary as well as beneficial to take a robust approach, by applying an optimization method that learns as one goes along, learning from experience as more aspects of the problem are observed. This view of optimization as a process has become prominent in varied fields and has led to some spectacular success in modeling and systems that are now part of our daily lives.

Graph neural networks (GNNs) is widely used to learn a powerful representation of graph-structured data. Recent work demonstrates that transferring knowledge from self-supervised tasks to downstream tasks could further improve graph representation. However, there is an inherent gap between self-supervised tasks and downstream tasks in terms of optimization objective and training data. Conventional pre-training methods may be not effective enough on knowledge transfer since they do not make any adaptation for downstream tasks. To solve such problems, we propose a new transfer learning paradigm on GNNs which could effectively leverage self-supervised tasks as auxiliary tasks to help the target task. Our methods would adaptively select and combine different auxiliary tasks with the target task in the fine-tuning stage. We design an adaptive auxiliary loss weighting model to learn the weights of auxiliary tasks by quantifying the consistency between auxiliary tasks and the target task. In addition, we learn the weighting model through meta-learning. Our methods can be applied to various transfer learning approaches, it performs well not only in multi-task learning but also in pre-training and fine-tuning. Comprehensive experiments on multiple downstream tasks demonstrate that the proposed methods can effectively combine auxiliary tasks with the target task and significantly improve the performance compared to state-of-the-art methods.

Graph Neural Networks (GNNs) have proven to be useful for many different practical applications. However, many existing GNN models have implicitly assumed homophily among the nodes connected in the graph, and therefore have largely overlooked the important setting of heterophily, where most connected nodes are from different classes. In this work, we propose a novel framework called CPGNN that generalizes GNNs for graphs with either homophily or heterophily. The proposed framework incorporates an interpretable compatibility matrix for modeling the heterophily or homophily level in the graph, which can be learned in an end-to-end fashion, enabling it to go beyond the assumption of strong homophily. Theoretically, we show that replacing the compatibility matrix in our framework with the identity (which represents pure homophily) reduces to GCN. Our extensive experiments demonstrate the effectiveness of our approach in more realistic and challenging experimental settings with significantly less training data compared to previous works: CPGNN variants achieve state-of-the-art results in heterophily settings with or without contextual node features, while maintaining comparable performance in homophily settings.

Data augmentation has been widely used to improve generalizability of machine learning models. However, comparatively little work studies data augmentation for graphs. This is largely due to the complex, non-Euclidean structure of graphs, which limits possible manipulation operations. Augmentation operations commonly used in vision and language have no analogs for graphs. Our work studies graph data augmentation for graph neural networks (GNNs) in the context of improving semi-supervised node-classification. We discuss practical and theoretical motivations, considerations and strategies for graph data augmentation. Our work shows that neural edge predictors can effectively encode class-homophilic structure to promote intra-class edges and demote inter-class edges in given graph structure, and our main contribution introduces the GAug graph data augmentation framework, which leverages these insights to improve performance in GNN-based node classification via edge prediction. Extensive experiments on multiple benchmarks show that augmentation via GAug improves performance across GNN architectures and datasets.

Graph Neural Networks (GNNs) have been shown to be effective models for different predictive tasks on graph-structured data. Recent work on their expressive power has focused on isomorphism tasks and countable feature spaces. We extend this theoretical framework to include continuous features - which occur regularly in real-world input domains and within the hidden layers of GNNs - and we demonstrate the requirement for multiple aggregation functions in this context. Accordingly, we propose Principal Neighbourhood Aggregation (PNA), a novel architecture combining multiple aggregators with degree-scalers (which generalize the sum aggregator). Finally, we compare the capacity of different models to capture and exploit the graph structure via a novel benchmark containing multiple tasks taken from classical graph theory, alongside existing benchmarks from real-world domains, all of which demonstrate the strength of our model. With this work, we hope to steer some of the GNN research towards new aggregation methods which we believe are essential in the search for powerful and robust models.

The task of detecting 3D objects in point cloud has a pivotal role in many real-world applications. However, 3D object detection performance is behind that of 2D object detection due to the lack of powerful 3D feature extraction methods. In order to address this issue, we propose to build a 3D backbone network to learn rich 3D feature maps by using sparse 3D CNN operations for 3D object detection in point cloud. The 3D backbone network can inherently learn 3D features from almost raw data without compressing point cloud into multiple 2D images and generate rich feature maps for object detection. The sparse 3D CNN takes full advantages of the sparsity in the 3D point cloud to accelerate computation and save memory, which makes the 3D backbone network achievable. Empirical experiments are conducted on the KITTI benchmark and results show that the proposed method can achieve state-of-the-art performance for 3D object detection.