Noisy shuffling channels capture the main characteristics of DNA storage systems where distinct segments of data are received out of order, after being corrupted by substitution errors. For realistic schemes with short-length segments, practical indexing and channel coding strategies are required to restore the order and combat the channel noise. In this paper, we develop a finite-length concatenated coding scheme that employs Reed-Solomon (RS) codes as outer codes and polar codes as inner codes, and utilizes an implicit indexing method based on cosets of the polar code. We propose a matched decoding method along with a metric for detecting the index that successfully restores the order, and correct channel errors at the receiver. Residual errors that are not corrected by the matched decoder are then corrected by the outer RS code. We derive analytical approximations for the frame error rate of the proposed scheme, and also evaluate its performance through simulations to demonstrate that the proposed implicit indexing method outperforms explicit indexing.
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Software systems often record important runtime information in logs to help with troubleshooting. Log-based anomaly detection has become a key research area that aims to identify system issues through log data, ultimately enhancing the reliability of software systems. Traditional deep learning methods often struggle to capture the semantic information embedded in log data, which is typically organized in natural language. In this paper, we propose LogLLM, a log-based anomaly detection framework that leverages large language models (LLMs). LogLLM employs BERT for extracting semantic vectors from log messages, while utilizing Llama, a transformer decoder-based model, for classifying log sequences. Additionally, we introduce a projector to align the vector representation spaces of BERT and Llama, ensuring a cohesive understanding of log semantics. Unlike conventional methods that require log parsers to extract templates, LogLLM preprocesses log messages with regular expressions, streamlining the entire process. Our framework is trained through a novel three-stage procedure designed to enhance performance and adaptability. Experimental results across four public datasets demonstrate that LogLLM outperforms state-of-the-art methods. Even when handling unstable logs, it effectively captures the semantic meaning of log messages and detects anomalies accurately.
Relation extraction as an important natural Language processing (NLP) task is to identify relations between named entities in text. Recently, graph convolutional networks over dependency trees have been widely used to capture syntactic features and achieved attractive performance. However, most existing dependency-based approaches ignore the positive influence of the words outside the dependency trees, sometimes conveying rich and useful information on relation extraction. In this paper, we propose a novel model, Entity-aware Self-attention Contextualized GCN (ESC-GCN), which efficiently incorporates syntactic structure of input sentences and semantic context of sequences. To be specific, relative position self-attention obtains the overall semantic pairwise correlation related to word position, and contextualized graph convolutional networks capture rich intra-sentence dependencies between words by adequately pruning operations. Furthermore, entity-aware attention layer dynamically selects which token is more decisive to make final relation prediction. In this way, our proposed model not only reduces the noisy impact from dependency trees, but also obtains easily-ignored entity-related semantic representation. Extensive experiments on various tasks demonstrate that our model achieves encouraging performance as compared to existing dependency-based and sequence-based models. Specially, our model excels in extracting relations between entities of long sentences.
Selective state space models (SSMs) represented by Mamba have demonstrated their computational efficiency and promising outcomes in various tasks, including automatic speech recognition (ASR). Mamba has been applied to ASR task with the attention-based encoder-decoder framework, where the cross-attention mechanism between encoder and decoder remains. This paper explores the capability of Mamba as the decoder-only architecture in ASR task. Our MAmba-based DEcoder-ONly approach (MADEON) consists of a single decoder that takes speech tokens as a condition and predicts text tokens in an autoregressive manner. To enhance MADEON, we further propose speech prefixing that performs bidirectional processing on speech tokens, which enriches the contextual information in the hidden states. Our experiments show that MADEON significantly outperforms a non-selective SSM. The combination of speech prefixing and the recently proposed Mamba-2 yields comparable performance to Transformer-based models on large datasets.
DNA-based data storage has been attracting significant attention due to its extremely high data storage density, low power consumption, and long duration compared to conventional data storage media. Despite the recent advancements in DNA data storage technology, significant challenges remain. In particular, various types of errors can occur during the processes of DNA synthesis, storage, and sequencing, including substitution errors, insertion errors, and deletion errors. Furthermore, the entire oligo may be lost. In this work, we report a DNA-based data storage architecture that incorporates efficient channel coding schemes, including different types of error-correcting codes (ECCs) and constrained codes, for both the inner coding and outer coding for the DNA data storage channel. We also carried out large scale experiments to validate our proposed DNA-based data storage architecture. Specifically, 1.61 and 1.69 MB data were encoded into 30,000 oligos each, with information densities of 1.731 and 1.815, respectively. It has been found that the stored information can be fully recovered without any error at average coverages of 4.5 and 6.0, respectively. This experiment achieved the highest net information density and lowest coverage among existing DNA-based data storage experiments (with standard DNA), with data recovery rates and coverage approaching theoretical optima.
The efficacy of diffusion models in generating a spectrum of data modalities, including images, text, and videos, has spurred inquiries into their utility in molecular generation, yielding significant advancements in the field. However, the molecular generation process with diffusion models involves multiple autoregressive steps over a finite time horizon, leading to exposure bias issues inherently. To address the exposure bias issue, we propose a training framework named GapDiff. The core idea of GapDiff is to utilize model-predicted conformations as ground truth probabilistically during training, aiming to mitigate the data distributional disparity between training and inference, thereby enhancing the affinity of generated molecules. We conduct experiments using a 3D molecular generation model on the CrossDocked2020 dataset, and the vina energy and diversity demonstrate the potency of our framework with superior affinity. GapDiff is available at \url{//github.com/HUGHNew/gapdiff}.
We propose a data-driven pressure distribution rendering method that uses the interpolation of experimentally obtained pressure values. The pressure data were collected using a pressure sensor array. The prediction was performed using linear interpolation, assuming that the pressure distribution is dependent on pushing displacement and contact angle. Leap Motion Controller was used to implement the prediction based on user input. The proposed prediction model was found to be fast and reproduce the measured data well.
The success of AI models relies on the availability of large, diverse, and high-quality datasets, which can be challenging to obtain due to data scarcity, privacy concerns, and high costs. Synthetic data has emerged as a promising solution by generating artificial data that mimics real-world patterns. This paper provides an overview of synthetic data research, discussing its applications, challenges, and future directions. We present empirical evidence from prior art to demonstrate its effectiveness and highlight the importance of ensuring its factuality, fidelity, and unbiasedness. We emphasize the need for responsible use of synthetic data to build more powerful, inclusive, and trustworthy language models.
The existence of representative datasets is a prerequisite of many successful artificial intelligence and machine learning models. However, the subsequent application of these models often involves scenarios that are inadequately represented in the data used for training. The reasons for this are manifold and range from time and cost constraints to ethical considerations. As a consequence, the reliable use of these models, especially in safety-critical applications, is a huge challenge. Leveraging additional, already existing sources of knowledge is key to overcome the limitations of purely data-driven approaches, and eventually to increase the generalization capability of these models. Furthermore, predictions that conform with knowledge are crucial for making trustworthy and safe decisions even in underrepresented scenarios. This work provides an overview of existing techniques and methods in the literature that combine data-based models with existing knowledge. The identified approaches are structured according to the categories integration, extraction and conformity. Special attention is given to applications in the field of autonomous driving.
InteractE: Improving Convolution-based Knowledge Graph Embeddings by Increasing Feature Interactions
Most existing knowledge graphs suffer from incompleteness, which can be alleviated by inferring missing links based on known facts. One popular way to accomplish this is to generate low-dimensional embeddings of entities and relations, and use these to make inferences. ConvE, a recently proposed approach, applies convolutional filters on 2D reshapings of entity and relation embeddings in order to capture rich interactions between their components. However, the number of interactions that ConvE can capture is limited. In this paper, we analyze how increasing the number of these interactions affects link prediction performance, and utilize our observations to propose InteractE. InteractE is based on three key ideas -- feature permutation, a novel feature reshaping, and circular convolution. Through extensive experiments, we find that InteractE outperforms state-of-the-art convolutional link prediction baselines on FB15k-237. Further, InteractE achieves an MRR score that is 9%, 7.5%, and 23% better than ConvE on the FB15k-237, WN18RR and YAGO3-10 datasets respectively. The results validate our central hypothesis -- that increasing feature interaction is beneficial to link prediction performance. We make the source code of InteractE available to encourage reproducible research.
Object detection typically assumes that training and test data are drawn from an identical distribution, which, however, does not always hold in practice. Such a distribution mismatch will lead to a significant performance drop. In this work, we aim to improve the cross-domain robustness of object detection. We tackle the domain shift on two levels: 1) the image-level shift, such as image style, illumination, etc, and 2) the instance-level shift, such as object appearance, size, etc. We build our approach based on the recent state-of-the-art Faster R-CNN model, and design two domain adaptation components, on image level and instance level, to reduce the domain discrepancy. The two domain adaptation components are based on H-divergence theory, and are implemented by learning a domain classifier in adversarial training manner. The domain classifiers on different levels are further reinforced with a consistency regularization to learn a domain-invariant region proposal network (RPN) in the Faster R-CNN model. We evaluate our newly proposed approach using multiple datasets including Cityscapes, KITTI, SIM10K, etc. The results demonstrate the effectiveness of our proposed approach for robust object detection in various domain shift scenarios.
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