The principal benefit of unsupervised representation learning is that a pre-trained model can be fine-tuned where data or labels are scarce. Existing approaches for graph representation learning are domain specific, maintaining consistent node and edge features across the pre-training and target datasets. This has precluded transfer to multiple domains. In this work we present Topology Only Pre-Training, a graph pre-training method based on node and edge feature exclusion. Separating graph learning into two stages, topology and features, we use contrastive learning to pre-train models over multiple domains. These models show positive transfer on evaluation datasets from multiple domains, including domains not present in pre-training data. On 75% of experiments, ToP models perform significantly ($P \leq 0.01$) better than a supervised baseline. These results include when node and edge features are used in evaluation, where performance is significantly better on 85.7% of tasks compared to single-domain or non-pre-trained models. We further show that out-of-domain topologies can produce more useful pre-training than in-domain. We show better transfer from non-molecule pre-training, compared to molecule pre-training, on 79% of molecular benchmarks.
Mixture of experts (MoE) model is a statistical machine learning design that aggregates multiple expert networks using a softmax gating function in order to form a more intricate and expressive model. Despite being commonly used in several applications owing to their scalability, the mathematical and statistical properties of MoE models are complex and difficult to analyze. As a result, previous theoretical works have primarily focused on probabilistic MoE models by imposing the impractical assumption that the data are generated from a Gaussian MoE model. In this work, we investigate the performance of the least squares estimators (LSE) under a deterministic MoE model where the data are sampled according to a regression model, a setting that has remained largely unexplored. We establish a condition called strong identifiability to characterize the convergence behavior of various types of expert functions. We demonstrate that the rates for estimating strongly identifiable experts, namely the widely used feed-forward networks with activation functions $\mathrm{sigmoid}(\cdot)$ and $\tanh(\cdot)$, are substantially faster than those of polynomial experts, which we show to exhibit a surprising slow estimation rate. Our findings have important practical implications for expert selection.
The search for ``biologically plausible'' learning algorithms has converged on the idea of representing gradients as activity differences. However, most approaches require a high degree of synchronization (distinct phases during learning) and introduce substantial computational overhead, which raises doubts regarding their biological plausibility as well as their potential utility for neuromorphic computing. Furthermore, they commonly rely on applying infinitesimal perturbations (nudges) to output units, which is impractical in noisy environments. Recently it has been shown that by modelling artificial neurons as dyads with two oppositely nudged compartments, it is possible for a fully local learning algorithm named ``dual propagation'' to bridge the performance gap to backpropagation, without requiring separate learning phases or infinitesimal nudging. However, the algorithm has the drawback that its numerical stability relies on symmetric nudging, which may be restrictive in biological and analog implementations. In this work we first provide a solid foundation for the objective underlying the dual propagation method, which also reveals a surprising connection with adversarial robustness. Second, we demonstrate how dual propagation is related to a particular adjoint state method, which is stable regardless of asymmetric nudging.
In-context learning is a powerful capability of certain machine learning models that arguably underpins the success of today's frontier AI models. However, in-context learning is critically limited to settings where the in-context distribution of interest $p_{\theta}^{ICL}( x|\mathcal{D})$ can be straightforwardly expressed and/or parameterized by the model; for instance, language modeling relies on expressing the next-token distribution as a categorical distribution parameterized by the network's output logits. In this work, we present a more general form of in-context learning without such a limitation that we call \textit{in-context learning of energy functions}. The idea is to instead learn the unconstrained and arbitrary in-context energy function $E_{\theta}^{ICL}(x|\mathcal{D})$ corresponding to the in-context distribution $p_{\theta}^{ICL}(x|\mathcal{D})$. To do this, we use classic ideas from energy-based modeling. We provide preliminary evidence that our method empirically works on synthetic data. Interestingly, our work contributes (to the best of our knowledge) the first example of in-context learning where the input space and output space differ from one another, suggesting that in-context learning is a more-general capability than previously realized.
In the scenario-based evaluation of machine learning models, a key problem is how to construct test datasets that represent various scenarios. The methodology proposed in this paper is to construct a benchmark and attach metadata to each test case. Then a test system can be constructed with test morphisms that filter the test cases based on metadata to form a dataset. The paper demonstrates this methodology with large language models for code generation. A benchmark called ScenEval is constructed from problems in textbooks, an online tutorial website and Stack Overflow. Filtering by scenario is demonstrated and the test sets are used to evaluate ChatGPT for Java code generation. Our experiments found that the performance of ChatGPT decreases with the complexity of the coding task. It is weakest for advanced topics like multi-threading, data structure algorithms and recursive methods. The Java code generated by ChatGPT tends to be much shorter than reference solution in terms of number of lines, while it is more likely to be more complex in both cyclomatic and cognitive complexity metrics, if the generated code is correct. However, the generated code is more likely to be less complex than the reference solution if the code is incorrect.
In supervised learning, understanding an input's proximity to the training data can help a model decide whether it has sufficient evidence for reaching a reliable prediction. While powerful probabilistic models such as Gaussian Processes naturally have this property, deep neural networks often lack it. In this paper, we introduce Distance Aware Bottleneck (DAB), i.e., a new method for enriching deep neural networks with this property. Building on prior information bottleneck approaches, our method learns a codebook that stores a compressed representation of all inputs seen during training. The distance of a new example from this codebook can serve as an uncertainty estimate for the example. The resulting model is simple to train and provides deterministic uncertainty estimates by a single forward pass. Finally, our method achieves better out-of-distribution (OOD) detection and misclassification prediction than prior methods, including expensive ensemble methods, deep kernel Gaussian Processes, and approaches based on the standard information bottleneck.
While deep reinforcement learning (RL) has fueled multiple high-profile successes in machine learning, it is held back from more widespread adoption by its often poor data efficiency and the limited generality of the policies it produces. A promising approach for alleviating these limitations is to cast the development of better RL algorithms as a machine learning problem itself in a process called meta-RL. Meta-RL is most commonly studied in a problem setting where, given a distribution of tasks, the goal is to learn a policy that is capable of adapting to any new task from the task distribution with as little data as possible. In this survey, we describe the meta-RL problem setting in detail as well as its major variations. We discuss how, at a high level, meta-RL research can be clustered based on the presence of a task distribution and the learning budget available for each individual task. Using these clusters, we then survey meta-RL algorithms and applications. We conclude by presenting the open problems on the path to making meta-RL part of the standard toolbox for a deep RL practitioner.
Pre-trained Language Models (PLMs) which are trained on large text corpus via self-supervised learning method, have yielded promising performance on various tasks in Natural Language Processing (NLP). However, though PLMs with huge parameters can effectively possess rich knowledge learned from massive training text and benefit downstream tasks at the fine-tuning stage, they still have some limitations such as poor reasoning ability due to the lack of external knowledge. Research has been dedicated to incorporating knowledge into PLMs to tackle these issues. In this paper, we present a comprehensive review of Knowledge-Enhanced Pre-trained Language Models (KE-PLMs) to provide a clear insight into this thriving field. We introduce appropriate taxonomies respectively for Natural Language Understanding (NLU) and Natural Language Generation (NLG) to highlight these two main tasks of NLP. For NLU, we divide the types of knowledge into four categories: linguistic knowledge, text knowledge, knowledge graph (KG), and rule knowledge. The KE-PLMs for NLG are categorized into KG-based and retrieval-based methods. Finally, we point out some promising future directions of KE-PLMs.
The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an increasing interest in the adaptive processing of graphs, which led to the development of different neural network-based methodologies. In this thesis, we take a different route and develop a Bayesian Deep Learning framework for graph learning. The dissertation begins with a review of the principles over which most of the methods in the field are built, followed by a study on graph classification reproducibility issues. We then proceed to bridge the basic ideas of deep learning for graphs with the Bayesian world, by building our deep architectures in an incremental fashion. This framework allows us to consider graphs with discrete and continuous edge features, producing unsupervised embeddings rich enough to reach the state of the art on several classification tasks. Our approach is also amenable to a Bayesian nonparametric extension that automatizes the choice of almost all model's hyper-parameters. Two real-world applications demonstrate the efficacy of deep learning for graphs. The first concerns the prediction of information-theoretic quantities for molecular simulations with supervised neural models. After that, we exploit our Bayesian models to solve a malware-classification task while being robust to intra-procedural code obfuscation techniques. We conclude the dissertation with an attempt to blend the best of the neural and Bayesian worlds together. The resulting hybrid model is able to predict multimodal distributions conditioned on input graphs, with the consequent ability to model stochasticity and uncertainty better than most works. Overall, we aim to provide a Bayesian perspective into the articulated research field of deep learning for graphs.
Contrastive learning models have achieved great success in unsupervised visual representation learning, which maximize the similarities between feature representations of different views of the same image, while minimize the similarities between feature representations of views of different images. In text summarization, the output summary is a shorter form of the input document and they have similar meanings. In this paper, we propose a contrastive learning model for supervised abstractive text summarization, where we view a document, its gold summary and its model generated summaries as different views of the same mean representation and maximize the similarities between them during training. We improve over a strong sequence-to-sequence text generation model (i.e., BART) on three different summarization datasets. Human evaluation also shows that our model achieves better faithfulness ratings compared to its counterpart without contrastive objectives.
Deep learning has yielded state-of-the-art performance on many natural language processing tasks including named entity recognition (NER). However, this typically requires large amounts of labeled data. In this work, we demonstrate that the amount of labeled training data can be drastically reduced when deep learning is combined with active learning. While active learning is sample-efficient, it can be computationally expensive since it requires iterative retraining. To speed this up, we introduce a lightweight architecture for NER, viz., the CNN-CNN-LSTM model consisting of convolutional character and word encoders and a long short term memory (LSTM) tag decoder. The model achieves nearly state-of-the-art performance on standard datasets for the task while being computationally much more efficient than best performing models. We carry out incremental active learning, during the training process, and are able to nearly match state-of-the-art performance with just 25\% of the original training data.