Deep Neural Networks (DNNs) have been extensively used in many areas including image processing, medical diagnostics, and autonomous driving. However, DNNs can exhibit erroneous behaviours that may lead to critical errors, especially when used in safety-critical systems. Inspired by testing techniques for traditional software systems, researchers have proposed neuron coverage criteria, as an analogy to source code coverage, to guide the testing of DNN models. Despite very active research on DNN coverage, several recent studies have questioned the usefulness of such criteria in guiding DNN testing. Further, from a practical standpoint, these criteria are white-box as they require access to the internals or training data of DNN models, which is in many contexts not feasible or convenient. In this paper, we investigate black-box input diversity metrics as an alternative to white-box coverage criteria. To this end, we first select and adapt three diversity metrics and study, in a controlled manner, their capacity to measure actual diversity in input sets. We then analyse their statistical association with fault detection using four datasets and five DNN models. We further compare diversity with state-of-the-art white-box coverage criteria. Our experiments show that relying on the diversity of image features embedded in test input sets is a more reliable indicator than coverage criteria to effectively guide the testing of DNNs. Indeed, we found that one of our selected black-box diversity metrics far outperforms existing coverage criteria in terms of fault-revealing capability and computational time. Results also confirm the suspicions that state-of-the-art coverage metrics are not adequate to guide the construction of test input sets to detect as many faults as possible with natural inputs.
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Deformable image registration (DIR), aiming to find spatial correspondence between images, is one of the most critical problems in the domain of medical image analysis. In this paper, we present a novel, generic, and accurate diffeomorphic image registration framework that utilizes neural ordinary differential equations (NODEs). We model each voxel as a moving particle and consider the set of all voxels in a 3D image as a high-dimensional dynamical system whose trajectory determines the targeted deformation field. Our method leverages deep neural networks for their expressive power in modeling dynamical systems, and simultaneously optimizes for a dynamical system between the image pairs and the corresponding transformation. Our formulation allows various constraints to be imposed along the transformation to maintain desired regularities. Our experiment results show that our method outperforms the benchmarks under various metrics. Additionally, we demonstrate the feasibility to expand our framework to register multiple image sets using a unified form of transformation,which could possibly serve a wider range of applications.
Among Bayesian methods, Monte-Carlo dropout provides principled tools for evaluating the epistemic uncertainty of neural networks. Its popularity recently led to seminal works that proposed activating the dropout layers only during inference for evaluating uncertainty. This approach, which we call dropout injection, provides clear benefits over its traditional counterpart (which we call embedded dropout) since it allows one to obtain a post hoc uncertainty measure for any existing network previously trained without dropout, avoiding an additional, time-consuming training process. Unfortunately, no previous work compared injected and embedded dropout; therefore, we provide the first thorough investigation, focusing on regression problems. The main contribution of our work is to provide guidelines on the effective use of injected dropout so that it can be a practical alternative to the current use of embedded dropout. In particular, we show that its effectiveness strongly relies on a suitable scaling of the corresponding uncertainty measure, and we discuss the trade-off between negative log-likelihood and calibration error as a function of the scale factor. Experimental results on UCI data sets and crowd counting benchmarks support our claim that dropout injection can effectively behave as a competitive post hoc uncertainty quantification technique.
Learning on graphs, where instance nodes are inter-connected, has become one of the central problems for deep learning, as relational structures are pervasive and induce data inter-dependence which hinders trivial adaptation of existing approaches that assume inputs to be i.i.d.~sampled. However, current models mostly focus on improving testing performance of in-distribution data and largely ignore the potential risk w.r.t. out-of-distribution (OOD) testing samples that may cause negative outcome if the prediction is overconfident on them. In this paper, we investigate the under-explored problem, OOD detection on graph-structured data, and identify a provably effective OOD discriminator based on an energy function directly extracted from graph neural networks trained with standard classification loss. This paves a way for a simple, powerful and efficient OOD detection model for GNN-based learning on graphs, which we call GNNSafe. It also has nice theoretical properties that guarantee an overall distinguishable margin between the detection scores for in-distribution and OOD samples, which, more critically, can be further strengthened by a learning-free energy belief propagation scheme. For comprehensive evaluation, we introduce new benchmark settings that evaluate the model for detecting OOD data from both synthetic and real distribution shifts (cross-domain graph shifts and temporal graph shifts). The results show that GNNSafe achieves up to $17.0\%$ AUROC improvement over state-of-the-arts and it could serve as simple yet strong baselines in such an under-developed area.
Objective. When a person listens to continuous speech, a corresponding response is elicited in the brain and can be recorded using electroencephalography (EEG). Linear models are presently used to relate the EEG recording to the corresponding speech signal. The ability of linear models to find a mapping between these two signals is used as a measure of neural tracking of speech. Such models are limited as they assume linearity in the EEG-speech relationship, which omits the nonlinear dynamics of the brain. As an alternative, deep learning models have recently been used to relate EEG to continuous speech, especially in auditory attention decoding (AAD) and single-speech-source paradigms. Approach. This paper reviews and comments on deep-learning-based studies that relate EEG to continuous speech in AAD and single-speech-source paradigms. We point out recurrent methodological pitfalls and the need for a standard benchmark of model analysis. Main results. We gathered 28 studies. The main methodological issues we found are biased cross-validations, data leakage leading to over-fitted models, or disproportionate data size compared to the model's complexity. In addition, we address requirements for a standard benchmark model analysis, such as public datasets, common evaluation metrics, and good practices for the match-mismatch task. Significance. We are the first to present a review paper summarizing the main deep-learning-based studies that relate EEG to speech while addressing methodological pitfalls and important considerations for this newly expanding field. Our study is particularly relevant given the growing application of deep learning in EEG-speech decoding.
Developmental plasticity plays a prominent role in shaping the brain's structure during ongoing learning in response to dynamically changing environments. However, the existing network compression methods for deep artificial neural networks (ANNs) and spiking neural networks (SNNs) draw little inspiration from the brain's developmental plasticity mechanisms, thus limiting their ability to learn efficiently, rapidly, and accurately. This paper proposed a developmental plasticity-inspired adaptive pruning (DPAP) method, with inspiration from the adaptive developmental pruning of dendritic spines, synapses, and neurons according to the "use it or lose it, gradually decay" principle. The proposed DPAP model considers multiple biologically realistic mechanisms (such as dendritic spine dynamic plasticity, activity-dependent neural spiking trace, and local synaptic plasticity), with the addition of an adaptive pruning strategy, so that the network structure can be dynamically optimized during learning without any pre-training and retraining. We demonstrated that the proposed DPAP method applied to deep ANNs and SNNs could learn efficient network architectures. Extensive comparative experiments show consistent and remarkable performance and speed boost with the extremely compressed networks on a diverse set of benchmark tasks, especially neuromorphic datasets for SNNs. This work explores how developmental plasticity enables the complex deep networks to gradually evolve into brain-like efficient and compact structures, eventually achieving state-of-the-art (SOTA) performance for biologically realistic SNNs.
Model compression can significantly reduce the sizes of deep neural network (DNN) models, and thus facilitates the dissemination of sophisticated, sizable DNN models, especially for their deployment on mobile or embedded devices. However, the prediction results of compressed models may deviate from those of their original models. To help developers thoroughly understand the impact of model compression, it is essential to test these models to find those deviated behaviors before dissemination. However, this is a non-trivial task because the architectures and gradients of compressed models are usually not available. To this end, we propose DFLARE, a novel, search-based, black-box testing technique to automatically find triggering inputs that result in deviated behaviors in image classification tasks. DFLARE iteratively applies a series of mutation operations to a given seed image, until a triggering input is found. For better efficacy and efficiency, DFLARE models the search problem as Markov Chains and leverages the Metropolis-Hasting algorithm to guide the selection of mutation operators in each iteration. Further, DFLARE utilizes a novel fitness function to prioritize the mutated inputs that either cause large differences between two models' outputs, or trigger previously unobserved models' probability vectors. We evaluated DFLARE on 21 compressed models for image classification tasks with three datasets. The results show that DFLARE outperforms the baseline in terms of efficacy and efficiency. We also demonstrated that the triggering inputs found by DFLARE can be used to repair up to 48.48% deviated behaviors in image classification tasks and further decrease the effectiveness of DFLARE on the repaired models.
Deep learning (DL) plays a more and more important role in our daily life due to its competitive performance in industrial application domains. As the core of DL-enabled systems, deep neural networks (DNNs) need to be carefully evaluated to ensure the produced models match the expected requirements. In practice, the \emph{de facto standard} to assess the quality of DNNs in the industry is to check their performance (accuracy) on a collected set of labeled test data. However, preparing such labeled data is often not easy partly because of the huge labeling effort, i.e., data labeling is labor-intensive, especially with the massive new incoming unlabeled data every day. Recent studies show that test selection for DNN is a promising direction that tackles this issue by selecting minimal representative data to label and using these data to assess the model. However, it still requires human effort and cannot be automatic. In this paper, we propose a novel technique, named \textit{Aries}, that can estimate the performance of DNNs on new unlabeled data using only the information obtained from the original test data. The key insight behind our technique is that the model should have similar prediction accuracy on the data which have similar distances to the decision boundary. We performed a large-scale evaluation of our technique on two famous datasets, CIFAR-10 and Tiny-ImageNet, four widely studied DNN models including ResNet101 and DenseNet121, and 13 types of data transformation methods. Results show that the estimated accuracy by \textit{Aries} is only 0.03\% -- 2.60\% off the true accuracy. Besides, \textit{Aries} also outperforms the state-of-the-art labeling-free methods in 50 out of 52 cases and selection-labeling-based methods in 96 out of 128 cases.
Background and purpose: Radiation-induced erectile dysfunction (RiED) is commonly seen in prostate cancer patients. Clinical trials have been developed in multiple institutions to investigate whether dose-sparing to the internal-pudendal-arteries (IPA) will improve retention of sexual potency. The IPA is usually not considered a conventional organ-at-risk (OAR) due to segmentation difficulty. In this work, we propose a deep learning (DL)-based auto-segmentation model for the IPA that utilizes CT and MRI or CT alone as the input image modality to accommodate variation in clinical practice. Materials and methods: 86 patients with CT and MRI images and noisy IPA labels were recruited in this study. We split the data into 42/14/30 for model training, testing, and a clinical observer study, respectively. There were three major innovations in this model: 1) we designed an architecture with squeeze-and-excite blocks and modality attention for effective feature extraction and production of accurate segmentation, 2) a novel loss function was used for training the model effectively with noisy labels, and 3) modality dropout strategy was used for making the model capable of segmentation in the absence of MRI. Results: The DSC, ASD, and HD95 values for the test dataset were 62.2%, 2.54mm, and 7mm, respectively. AI segmented contours were dosimetrically equivalent to the expert physician's contours. The observer study showed that expert physicians' scored AI contours (mean=3.7) higher than inexperienced physicians' contours (mean=3.1). When inexperienced physicians started with AI contours, the score improved to 3.7. Conclusion: The proposed model achieved good quality IPA contours to improve uniformity of segmentation and to facilitate introduction of standardized IPA segmentation into clinical trials and practice.
We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.
In humans, Attention is a core property of all perceptual and cognitive operations. Given our limited ability to process competing sources, attention mechanisms select, modulate, and focus on the information most relevant to behavior. For decades, concepts and functions of attention have been studied in philosophy, psychology, neuroscience, and computing. For the last six years, this property has been widely explored in deep neural networks. Currently, the state-of-the-art in Deep Learning is represented by neural attention models in several application domains. This survey provides a comprehensive overview and analysis of developments in neural attention models. We systematically reviewed hundreds of architectures in the area, identifying and discussing those in which attention has shown a significant impact. We also developed and made public an automated methodology to facilitate the development of reviews in the area. By critically analyzing 650 works, we describe the primary uses of attention in convolutional, recurrent networks and generative models, identifying common subgroups of uses and applications. Furthermore, we describe the impact of attention in different application domains and their impact on neural networks' interpretability. Finally, we list possible trends and opportunities for further research, hoping that this review will provide a succinct overview of the main attentional models in the area and guide researchers in developing future approaches that will drive further improvements.
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