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Positive Unlabeled (PU) learning refers to the task of learning a binary classifier given a few labeled positive samples, and a set of unlabeled samples (which could be positive or negative). In this paper, we propose a novel PU learning framework, that starts by learning a feature space through pretext-invariant representation learning and then applies pseudo-labeling to the unlabeled examples, leveraging the concentration property of the embeddings. Overall, our proposed approach handily outperforms state-of-the-art PU learning methods across several standard PU benchmark datasets, while not requiring a-priori knowledge or estimate of class prior. Remarkably, our method remains effective even when labeled data is scant, where most PU learning algorithms falter. We also provide simple theoretical analysis motivating our proposed algorithms and establish generalization guarantee for our approach.

A pivotal aspect in the design of neural networks lies in selecting activation functions, crucial for introducing nonlinear structures that capture intricate input-output patterns. While the effectiveness of adaptive or trainable activation functions has been studied in domains with ample data, like image classification problems, significant gaps persist in understanding their influence on classification accuracy and predictive uncertainty in settings characterized by limited data availability. This research aims to address these gaps by investigating the use of two types of adaptive activation functions. These functions incorporate shared and individual trainable parameters per hidden layer and are examined in three testbeds derived from additive manufacturing problems containing fewer than one hundred training instances. Our investigation reveals that adaptive activation functions, such as Exponential Linear Unit (ELU) and Softplus, with individual trainable parameters, result in accurate and confident prediction models that outperform fixed-shape activation functions and the less flexible method of using identical trainable activation functions in a hidden layer. Therefore, this work presents an elegant way of facilitating the design of adaptive neural networks in scientific and engineering problems.

Several microring resonator (MRR) based analog photonic architectures have been proposed to accelerate general matrix-matrix multiplications (GEMMs) in deep neural networks with exceptional throughput and energy efficiency. To implement GEMM functions, these MRR-based architectures, in general, manipulate optical signals in five different ways: (i) Splitting (copying) of multiple optical signals to achieve a certain fan-out, (ii) Aggregation (multiplexing) of multiple optical signals to achieve a certain fan-in, (iii) Modulation of optical signals to imprint input values onto analog signal amplitude, (iv) Weighting of modulated optical signals to achieve analog input-weight multiplication, (v) Summation of optical signals. The MRR-based GEMM accelerators undertake the first four ways of signal manipulation in an arbitrary order ignoring the possible impact of the order of these manipulations on their performance. In this paper, we conduct a detailed analysis of accelerator organizations with three different orders of these manipulations: (1) Modulation-Aggregation-Splitting-Weighting (MASW), (2) Aggregation-Splitting-Modulation-Weighting (ASMW), and (3) Splitting-Modulation-Weighting-Aggregation (SMWA). We show that these organizations affect the crosstalk noise and optical signal losses in different magnitudes, which renders these organizations with different levels of processing parallelism at the circuit level, and different magnitudes of throughput and energy-area efficiency at the system level. Our evaluation results for four CNN models show that SMWA organization achieves up to 4.4$\times$, 5$\times$, and 5.2$\times$ better throughput, energy efficiency, and area-energy efficiency, respectively, compared to ASMW and MASW organizations on average.

The partially observable generalized linear model (POGLM) is a powerful tool for understanding neural connectivity under the assumption of existing hidden neurons. With spike trains only recorded from visible neurons, existing works use variational inference to learn POGLM meanwhile presenting the difficulty of learning this latent variable model. There are two main issues: (1) the sampled Poisson hidden spike count hinders the use of the pathwise gradient estimator in VI; and (2) the existing design of the variational model is neither expressive nor time-efficient, which further affects the performance. For (1), we propose a new differentiable POGLM, which enables the pathwise gradient estimator, better than the score function gradient estimator used in existing works. For (2), we propose the forward-backward message-passing sampling scheme for the variational model. Comprehensive experiments show that our differentiable POGLMs with our forward-backward message passing produce a better performance on one synthetic and two real-world datasets. Furthermore, our new method yields more interpretable parameters, underscoring its significance in neuroscience.

Modeling the correlations among errors is closely associated with how accurately the model can quantify predictive uncertainty in probabilistic time series forecasting. Recent multivariate models have made significant progress in accounting for contemporaneous correlations among errors, while a common assumption on these errors is that they are temporally independent for the sake of statistical simplicity. However, real-world observations often deviate from this assumption, since errors usually exhibit substantial autocorrelation due to various factors such as the exclusion of temporally correlated covariates. In this work, we propose an efficient method, based on a low-rank-plus-diagonal parameterization of the covariance matrix, which can effectively characterize the autocorrelation of errors. The proposed method possesses several desirable properties: the complexity does not scale with the number of time series, the resulting covariance can be used for calibrating predictions, and it can seamlessly integrate with any model with Gaussian-distributed errors. We empirically demonstrate these properties using two distinct neural forecasting models-GPVar and Transformer. Our experimental results confirm the effectiveness of our method in enhancing predictive accuracy and the quality of uncertainty quantification on multiple real-world datasets.

Recently, graph neural networks (GNNs) have been widely used for document classification. However, most existing methods are based on static word co-occurrence graphs without sentence-level information, which poses three challenges:(1) word ambiguity, (2) word synonymity, and (3) dynamic contextual dependency. To address these challenges, we propose a novel GNN-based sparse structure learning model for inductive document classification. Specifically, a document-level graph is initially generated by a disjoint union of sentence-level word co-occurrence graphs. Our model collects a set of trainable edges connecting disjoint words between sentences and employs structure learning to sparsely select edges with dynamic contextual dependencies. Graphs with sparse structures can jointly exploit local and global contextual information in documents through GNNs. For inductive learning, the refined document graph is further fed into a general readout function for graph-level classification and optimization in an end-to-end manner. Extensive experiments on several real-world datasets demonstrate that the proposed model outperforms most state-of-the-art results, and reveal the necessity to learn sparse structures for each document.

Graph Neural Networks (GNNs) have received considerable attention on graph-structured data learning for a wide variety of tasks. The well-designed propagation mechanism which has been demonstrated effective is the most fundamental part of GNNs. Although most of GNNs basically follow a message passing manner, litter effort has been made to discover and analyze their essential relations. In this paper, we establish a surprising connection between different propagation mechanisms with a unified optimization problem, showing that despite the proliferation of various GNNs, in fact, their proposed propagation mechanisms are the optimal solution optimizing a feature fitting function over a wide class of graph kernels with a graph regularization term. Our proposed unified optimization framework, summarizing the commonalities between several of the most representative GNNs, not only provides a macroscopic view on surveying the relations between different GNNs, but also further opens up new opportunities for flexibly designing new GNNs. With the proposed framework, we discover that existing works usually utilize naive graph convolutional kernels for feature fitting function, and we further develop two novel objective functions considering adjustable graph kernels showing low-pass or high-pass filtering capabilities respectively. Moreover, we provide the convergence proofs and expressive power comparisons for the proposed models. Extensive experiments on benchmark datasets clearly show that the proposed GNNs not only outperform the state-of-the-art methods but also have good ability to alleviate over-smoothing, and further verify the feasibility for designing GNNs with our unified optimization framework.

Recently, graph neural networks (GNNs) have revolutionized the field of graph representation learning through effectively learned node embeddings, and achieved state-of-the-art results in tasks such as node classification and link prediction. However, current GNN methods are inherently flat and do not learn hierarchical representations of graphs---a limitation that is especially problematic for the task of graph classification, where the goal is to predict the label associated with an entire graph. Here we propose DiffPool, a differentiable graph pooling module that can generate hierarchical representations of graphs and can be combined with various graph neural network architectures in an end-to-end fashion. DiffPool learns a differentiable soft cluster assignment for nodes at each layer of a deep GNN, mapping nodes to a set of clusters, which then form the coarsened input for the next GNN layer. Our experimental results show that combining existing GNN methods with DiffPool yields an average improvement of 5-10% accuracy on graph classification benchmarks, compared to all existing pooling approaches, achieving a new state-of-the-art on four out of five benchmark data sets.

We propose a new method for event extraction (EE) task based on an imitation learning framework, specifically, inverse reinforcement learning (IRL) via generative adversarial network (GAN). The GAN estimates proper rewards according to the difference between the actions committed by the expert (or ground truth) and the agent among complicated states in the environment. EE task benefits from these dynamic rewards because instances and labels yield to various extents of difficulty and the gains are expected to be diverse -- e.g., an ambiguous but correctly detected trigger or argument should receive high gains -- while the traditional RL models usually neglect such differences and pay equal attention on all instances. Moreover, our experiments also demonstrate that the proposed framework outperforms state-of-the-art methods, without explicit feature engineering.

Deep neural networks (DNNs) have been found to be vulnerable to adversarial examples resulting from adding small-magnitude perturbations to inputs. Such adversarial examples can mislead DNNs to produce adversary-selected results. Different attack strategies have been proposed to generate adversarial examples, but how to produce them with high perceptual quality and more efficiently requires more research efforts. In this paper, we propose AdvGAN to generate adversarial examples with generative adversarial networks (GANs), which can learn and approximate the distribution of original instances. For AdvGAN, once the generator is trained, it can generate adversarial perturbations efficiently for any instance, so as to potentially accelerate adversarial training as defenses. We apply AdvGAN in both semi-whitebox and black-box attack settings. In semi-whitebox attacks, there is no need to access the original target model after the generator is trained, in contrast to traditional white-box attacks. In black-box attacks, we dynamically train a distilled model for the black-box model and optimize the generator accordingly. Adversarial examples generated by AdvGAN on different target models have high attack success rate under state-of-the-art defenses compared to other attacks. Our attack has placed the first with 92.76% accuracy on a public MNIST black-box attack challenge.