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LU and Cholesky matrix factorization algorithms are core subroutines used to solve systems of linear equations (SLEs) encountered while solving an optimization problem. Standard factorization algorithms are highly efficient but remain susceptible to the accumulation roundoff errors, which can lead solvers to return feasibility and optimality certificates that are actually invalid. This paper introduces a novel approach for solving sequences of closely related SLEs encountered in nonlinear programming efficiently and without roundoff errors. Specifically, it introduces rank-one update algorithms for the roundoff-error-free (REF) factorization framework, a toolset built on integer-preserving arithmetic that has led to the development and implementation of fail-proof SLE solution subroutines for linear programming. The formal guarantees of the proposed algorithms are formally established through the derivation of theoretical insights. Their computational advantages are supported with computational experiments, which demonstrate upwards of 75x-improvements over exact factorization run-times on fully dense matrices with over one million entries. A significant advantage of the proposed methodology is that the length of any coefficient calculated via the associated algorithms is bounded polynomially in the size of the inputs without having to resort to greatest common divisor operations, which are required by and thereby hinder an efficient implementation of exact rational arithmetic approaches.

A long line of research on fixed parameter tractability of integer programming culminated with showing that integer programs with n variables and a constraint matrix with dual tree-depth d and largest entry D are solvable in time g(d,D)poly(n) for some function g. However, the dual tree-depth of a constraint matrix is not preserved by row operations, i.e., a given integer program can be equivalent to another with a smaller dual tree-depth, and thus does not reflect its geometric structure. We prove that the minimum dual tree-depth of a row-equivalent matrix is equal to the branch-depth of the matroid defined by the columns of the matrix. We design a fixed parameter algorithm for computing branch-depth of matroids represented over a finite field and a fixed parameter algorithm for computing a row-equivalent matrix with minimum dual tree-depth. Finally, we use these results to obtain an algorithm for integer programming running in time g(d*,D)poly(n) where d* is the branch-depth of the constraint matrix; the branch-depth cannot be replaced by the more permissive notion of branch-width.

Second-order methods have the capability of accelerating optimization by using much richer curvature information than first-order methods. However, most are impractical for deep learning, where the number of training parameters is huge. In Goldfarb et al. (2020), practical quasi-Newton methods were proposed that approximate the Hessian of a multilayer perceptron (MLP) model by a layer-wise block diagonal matrix where each layer's block is further approximated by a Kronecker product corresponding to the structure of the Hessian restricted to that layer. Here, we extend these methods to enable them to be applied to convolutional neural networks (CNNs), by analyzing the Kronecker-factored structure of the Hessian matrix of convolutional layers. Several improvements to the methods in Goldfarb et al. (2020) are also proposed that can be applied to both MLPs and CNNs. These new methods have memory requirements comparable to first-order methods and much less per-iteration time complexity than those in Goldfarb et al. (2020). Moreover, convergence results are proved for a variant under relatively mild conditions. Finally, we compared the performance of our new methods against several state-of-the-art (SOTA) methods on MLP autoencoder and CNN problems, and found that they outperformed the first-order SOTA methods and performed comparably to the second-order SOTA methods.

Directed Acyclic Graphs (DAGs) provide a powerful framework to model causal relationships among variables in multivariate settings; in addition, through the do-calculus theory, they allow for the identification and estimation of causal effects between variables also from pure observational data. In this setting, the process of inferring the DAG structure from the data is referred to as causal structure learning or causal discovery. We introduce BCDAG, an R package for Bayesian causal discovery and causal effect estimation from Gaussian observational data, implementing the Markov chain Monte Carlo (MCMC) scheme proposed by Castelletti & Mascaro (2021). Our implementation scales efficiently with the number of observations and, whenever the DAGs are sufficiently sparse, with the number of variables in the dataset. The package also provides functions for convergence diagnostics and for visualizing and summarizing posterior inference. In this paper, we present the key features of the underlying methodology along with its implementation in BCDAG. We then illustrate the main functions and algorithms on both real and simulated datasets.

We apply computational Game Theory to a unification of physics-based models that represent decision-making across a number of agents within both cooperative and competitive processes. Here the competitors try to both positively influence their own returns, while negatively affecting those of their competitors. Modelling these interactions with the so-called Boyd-Kuramoto-Lanchester (BKL) complex dynamical system model yields results that can be applied to business, gaming and security contexts. This paper studies a class of decision problems on the BKL model, where a large set of coupled, switching dynamical systems are analysed using game-theoretic methods. Due to their size, the computational cost of solving these BKL games becomes the dominant factor in the solution process. To resolve this, we introduce a novel Nash Dominant solver, which is both numerically efficient and exact. The performance of this new solution technique is compared to traditional exact solvers, which traverse the entire game tree, as well as to approximate solvers such as Myopic and Monte Carlo Tree Search (MCTS). These techniques are assessed, and used to gain insights into both nonlinear dynamical systems and strategic decision making in adversarial environments.

In 1954, Alston S. Householder published Principles of Numerical Analysis, one of the first modern treatments on matrix decomposition that favored a (block) LU decomposition-the factorization of a matrix into the product of lower and upper triangular matrices. And now, matrix decomposition has become a core technology in machine learning, largely due to the development of the back propagation algorithm in fitting a neural network. The sole aim of this survey is to give a self-contained introduction to concepts and mathematical tools in numerical linear algebra and matrix analysis in order to seamlessly introduce matrix decomposition techniques and their applications in subsequent sections. However, we clearly realize our inability to cover all the useful and interesting results concerning matrix decomposition and given the paucity of scope to present this discussion, e.g., the separated analysis of the Euclidean space, Hermitian space, Hilbert space, and things in the complex domain. We refer the reader to literature in the field of linear algebra for a more detailed introduction to the related fields.

Several recent applications of optimal transport (OT) theory to machine learning have relied on regularization, notably entropy and the Sinkhorn algorithm. Because matrix-vector products are pervasive in the Sinkhorn algorithm, several works have proposed to \textit{approximate} kernel matrices appearing in its iterations using low-rank factors. Another route lies instead in imposing low-rank constraints on the feasible set of couplings considered in OT problems, with no approximations on cost nor kernel matrices. This route was first explored by Forrow et al., 2018, who proposed an algorithm tailored for the squared Euclidean ground cost, using a proxy objective that can be solved through the machinery of regularized 2-Wasserstein barycenters. Building on this, we introduce in this work a generic approach that aims at solving, in full generality, the OT problem under low-rank constraints with arbitrary costs. Our algorithm relies on an explicit factorization of low rank couplings as a product of \textit{sub-coupling} factors linked by a common marginal; similar to an NMF approach, we alternatively updates these factors. We prove the non-asymptotic stationary convergence of this algorithm and illustrate its efficiency on benchmark experiments.

Discovering causal structure among a set of variables is a fundamental problem in many empirical sciences. Traditional score-based casual discovery methods rely on various local heuristics to search for a Directed Acyclic Graph (DAG) according to a predefined score function. While these methods, e.g., greedy equivalence search, may have attractive results with infinite samples and certain model assumptions, they are usually less satisfactory in practice due to finite data and possible violation of assumptions. Motivated by recent advances in neural combinatorial optimization, we propose to use Reinforcement Learning (RL) to search for the DAG with the best scoring. Our encoder-decoder model takes observable data as input and generates graph adjacency matrices that are used to compute rewards. The reward incorporates both the predefined score function and two penalty terms for enforcing acyclicity. In contrast with typical RL applications where the goal is to learn a policy, we use RL as a search strategy and our final output would be the graph, among all graphs generated during training, that achieves the best reward. We conduct experiments on both synthetic and real datasets, and show that the proposed approach not only has an improved search ability but also allows a flexible score function under the acyclicity constraint.

Review-based recommender systems have gained noticeable ground in recent years. In addition to the rating scores, those systems are enriched with textual evaluations of items by the users. Neural language processing models, on the other hand, have already found application in recommender systems, mainly as a means of encoding user preference data, with the actual textual description of items serving only as side information. In this paper, a novel approach to incorporating the aforementioned models into the recommendation process is presented. Initially, a neural language processing model and more specifically the paragraph vector model is used to encode textual user reviews of variable length into feature vectors of fixed length. Subsequently this information is fused along with the rating scores in a probabilistic matrix factorization algorithm, based on maximum a-posteriori estimation. The resulting system, ParVecMF, is compared to a ratings' matrix factorization approach on a reference dataset. The obtained preliminary results on a set of two metrics are encouraging and may stimulate further research in this area.

Since the invention of word2vec, the skip-gram model has significantly advanced the research of network embedding, such as the recent emergence of the DeepWalk, LINE, PTE, and node2vec approaches. In this work, we show that all of the aforementioned models with negative sampling can be unified into the matrix factorization framework with closed forms. Our analysis and proofs reveal that: (1) DeepWalk empirically produces a low-rank transformation of a network's normalized Laplacian matrix; (2) LINE, in theory, is a special case of DeepWalk when the size of vertices' context is set to one; (3) As an extension of LINE, PTE can be viewed as the joint factorization of multiple networks' Laplacians; (4) node2vec is factorizing a matrix related to the stationary distribution and transition probability tensor of a 2nd-order random walk. We further provide the theoretical connections between skip-gram based network embedding algorithms and the theory of graph Laplacian. Finally, we present the NetMF method as well as its approximation algorithm for computing network embedding. Our method offers significant improvements over DeepWalk and LINE for conventional network mining tasks. This work lays the theoretical foundation for skip-gram based network embedding methods, leading to a better understanding of latent network representation learning.