The promise of Mobile Health (mHealth) is the ability to use wearable sensors to monitor participant physiology at high frequencies during daily life to enable temporally-precise health interventions. However, a major challenge is frequent missing data. Despite a rich imputation literature, existing techniques are ineffective for the pulsative signals which comprise many mHealth applications, and a lack of available datasets has stymied progress. We address this gap with PulseImpute, the first large-scale pulsative signal imputation challenge which includes realistic mHealth missingness models, an extensive set of baselines, and clinically-relevant downstream tasks. Our baseline models include a novel transformer-based architecture designed to exploit the structure of pulsative signals. We hope that PulseImpute will enable the ML community to tackle this significant and challenging task.
Recently, there have been significant advancements in Image Restoration based on CNN and transformer. However, the inherent characteristics of the Image Restoration task are often overlooked in many works. These works often focus on the basic block design and stack numerous basic blocks to the model, leading to redundant parameters and unnecessary computations and hindering the efficiency of the image restoration. In this paper, we propose a Lightweight Image Restoration network called LIR to efficiently remove degradation (blur, rain, noise, haze, etc.). A key component in LIR is the Efficient Adaptive Attention (EAA) Block, which is mainly composed of Adaptive Filters and Attention Blocks. It is capable of adaptively sharpening contours, removing degradation, and capturing global information in various image restoration scenes in an efficient and computation-friendly manner. In addition, through a simple structural design, LIR addresses the degradations existing in the local and global residual connections that are ignored by modern networks. Extensive experiments demonstrate that our LIR achieves comparable performance to state-of-the-art networks on most benchmarks with fewer parameters and computations. It is worth noting that our LIR produces better visual results than state-of-the-art networks that are more in line with the human aesthetic.
Artificial Intelligence techniques can be used to classify a patient's physical activities and predict vital signs for remote patient monitoring. Regression analysis based on non-linear models like deep learning models has limited explainability due to its black-box nature. This can require decision-makers to make blind leaps of faith based on non-linear model results, especially in healthcare applications. In non-invasive monitoring, patient data from tracking sensors and their predisposing clinical attributes act as input features for predicting future vital signs. Explaining the contributions of various features to the overall output of the monitoring application is critical for a clinician's decision-making. In this study, an Explainable AI for Quantitative analysis (QXAI) framework is proposed with post-hoc model explainability and intrinsic explainability for regression and classification tasks in a supervised learning approach. This was achieved by utilizing the Shapley values concept and incorporating attention mechanisms in deep learning models. We adopted the artificial neural networks (ANN) and attention-based Bidirectional LSTM (BiLSTM) models for the prediction of heart rate and classification of physical activities based on sensor data. The deep learning models achieved state-of-the-art results in both prediction and classification tasks. Global explanation and local explanation were conducted on input data to understand the feature contribution of various patient data. The proposed QXAI framework was evaluated using PPG-DaLiA data to predict heart rate and mobile health (MHEALTH) data to classify physical activities based on sensor data. Monte Carlo approximation was applied to the framework to overcome the time complexity and high computation power requirements required for Shapley value calculations.
Table understanding capability of Large Language Models (LLMs) has been extensively studied through the task of question-answering (QA) over tables. Typically, only a small part of the whole table is relevant to derive the answer for a given question. The irrelevant parts act as noise and are distracting information, resulting in sub-optimal performance due to the vulnerability of LLMs to noise. To mitigate this, we propose CABINET (Content RelevAnce-Based NoIse ReductioN for TablE QuesTion-Answering) - a framework to enable LLMs to focus on relevant tabular data by suppressing extraneous information. CABINET comprises an Unsupervised Relevance Scorer (URS), trained differentially with the QA LLM, that weighs the table content based on its relevance to the input question before feeding it to the question-answering LLM (QA LLM). To further aid the relevance scorer, CABINET employs a weakly supervised module that generates a parsing statement describing the criteria of rows and columns relevant to the question and highlights the content of corresponding table cells. CABINET significantly outperforms various tabular LLM baselines, as well as GPT3-based in-context learning methods, is more robust to noise, maintains outperformance on tables of varying sizes, and establishes new SoTA performance on WikiTQ, FeTaQA, and WikiSQL datasets. We release our code and datasets at //github.com/Sohanpatnaik106/CABINET_QA.
The effectiveness of Intrusion Detection Systems (IDS) is critical in an era where cyber threats are becoming increasingly complex. Machine learning (ML) and deep learning (DL) models provide an efficient and accurate solution for identifying attacks and anomalies in computer networks. However, using ML and DL models in IDS has led to a trust deficit due to their non-transparent decision-making. This transparency gap in IDS research is significant, affecting confidence and accountability. To address, this paper introduces a novel Explainable IDS approach, called X-CBA, that leverages the structural advantages of Graph Neural Networks (GNNs) to effectively process network traffic data, while also adapting a new Explainable AI (XAI) methodology. Unlike most GNN-based IDS that depend on labeled network traffic and node features, thereby overlooking critical packet-level information, our approach leverages a broader range of traffic data through network flows, including edge attributes, to improve detection capabilities and adapt to novel threats. Through empirical testing, we establish that our approach not only achieves high accuracy with 99.47% in threat detection but also advances the field by providing clear, actionable explanations of its analytical outcomes. This research also aims to bridge the current gap and facilitate the broader integration of ML/DL technologies in cybersecurity defenses by offering a local and global explainability solution that is both precise and interpretable.
Combining the strengths of many existing predictors to obtain a Mixture of Experts which is superior to its individual components is an effective way to improve the performance without having to develop new architectures or train a model from scratch. However, surprisingly, we find that na\"ively combining expert object detectors in a similar way to Deep Ensembles, can often lead to degraded performance. We identify that the primary cause of this issue is that the predictions of the experts do not match their performance, a term referred to as miscalibration. Consequently, the most confident detector dominates the final predictions, preventing the mixture from leveraging all the predictions from the experts appropriately. To address this, when constructing the Mixture of Experts, we propose to combine their predictions in a manner which reflects the individual performance of the experts; an objective we achieve by first calibrating the predictions before filtering and refining them. We term this approach the Mixture of Calibrated Experts and demonstrate its effectiveness through extensive experiments on 5 different detection tasks using a variety of detectors, showing that it: (i) improves object detectors on COCO and instance segmentation methods on LVIS by up to $\sim 2.5$ AP; (ii) reaches state-of-the-art on COCO test-dev with $65.1$ AP and on DOTA with $82.62$ $\mathrm{AP_{50}}$; (iii) outperforms single models consistently on recent detection tasks such as Open Vocabulary Object Detection.
To obtain high-quality Positron emission tomography (PET) images while minimizing radiation exposure, numerous methods have been proposed to reconstruct standard-dose PET (SPET) images from the corresponding low-dose PET (LPET) images. However, these methods heavily rely on voxel-based representations, which fall short of adequately accounting for the precise structure and fine-grained context, leading to compromised reconstruction. In this paper, we propose a 3D point-based context clusters GAN, namely PCC-GAN, to reconstruct high-quality SPET images from LPET. Specifically, inspired by the geometric representation power of points, we resort to a point-based representation to enhance the explicit expression of the image structure, thus facilitating the reconstruction with finer details. Moreover, a context clustering strategy is applied to explore the contextual relationships among points, which mitigates the ambiguities of small structures in the reconstructed images. Experiments on both clinical and phantom datasets demonstrate that our PCC-GAN outperforms the state-of-the-art reconstruction methods qualitatively and quantitatively. Code is available at //github.com/gluucose/PCCGAN.
Text Classification is the most essential and fundamental problem in Natural Language Processing. While numerous recent text classification models applied the sequential deep learning technique, graph neural network-based models can directly deal with complex structured text data and exploit global information. Many real text classification applications can be naturally cast into a graph, which captures words, documents, and corpus global features. In this survey, we bring the coverage of methods up to 2023, including corpus-level and document-level graph neural networks. We discuss each of these methods in detail, dealing with the graph construction mechanisms and the graph-based learning process. As well as the technological survey, we look at issues behind and future directions addressed in text classification using graph neural networks. We also cover datasets, evaluation metrics, and experiment design and present a summary of published performance on the publicly available benchmarks. Note that we present a comprehensive comparison between different techniques and identify the pros and cons of various evaluation metrics in this survey.
Recently many efforts have been devoted to applying graph neural networks (GNNs) to molecular property prediction which is a fundamental task for computational drug and material discovery. One of major obstacles to hinder the successful prediction of molecule property by GNNs is the scarcity of labeled data. Though graph contrastive learning (GCL) methods have achieved extraordinary performance with insufficient labeled data, most focused on designing data augmentation schemes for general graphs. However, the fundamental property of a molecule could be altered with the augmentation method (like random perturbation) on molecular graphs. Whereas, the critical geometric information of molecules remains rarely explored under the current GNN and GCL architectures. To this end, we propose a novel graph contrastive learning method utilizing the geometry of the molecule across 2D and 3D views, which is named GeomGCL. Specifically, we first devise a dual-view geometric message passing network (GeomMPNN) to adaptively leverage the rich information of both 2D and 3D graphs of a molecule. The incorporation of geometric properties at different levels can greatly facilitate the molecular representation learning. Then a novel geometric graph contrastive scheme is designed to make both geometric views collaboratively supervise each other to improve the generalization ability of GeomMPNN. We evaluate GeomGCL on various downstream property prediction tasks via a finetune process. Experimental results on seven real-life molecular datasets demonstrate the effectiveness of our proposed GeomGCL against state-of-the-art baselines.
Graph Neural Networks (GNNs) are widely used for analyzing graph-structured data. Most GNN methods are highly sensitive to the quality of graph structures and usually require a perfect graph structure for learning informative embeddings. However, the pervasiveness of noise in graphs necessitates learning robust representations for real-world problems. To improve the robustness of GNN models, many studies have been proposed around the central concept of Graph Structure Learning (GSL), which aims to jointly learn an optimized graph structure and corresponding representations. Towards this end, in the presented survey, we broadly review recent progress of GSL methods for learning robust representations. Specifically, we first formulate a general paradigm of GSL, and then review state-of-the-art methods classified by how they model graph structures, followed by applications that incorporate the idea of GSL in other graph tasks. Finally, we point out some issues in current studies and discuss future directions.
Distant supervision can effectively label data for relation extraction, but suffers from the noise labeling problem. Recent works mainly perform soft bag-level noise reduction strategies to find the relatively better samples in a sentence bag, which is suboptimal compared with making a hard decision of false positive samples in sentence level. In this paper, we introduce an adversarial learning framework, which we named DSGAN, to learn a sentence-level true-positive generator. Inspired by Generative Adversarial Networks, we regard the positive samples generated by the generator as the negative samples to train the discriminator. The optimal generator is obtained until the discrimination ability of the discriminator has the greatest decline. We adopt the generator to filter distant supervision training dataset and redistribute the false positive instances into the negative set, in which way to provide a cleaned dataset for relation classification. The experimental results show that the proposed strategy significantly improves the performance of distant supervision relation extraction comparing to state-of-the-art systems.