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Denoising diffusion probabilistic models (DDPMs) have recently taken the field of generative modeling by storm, pioneering new state-of-the-art results in disciplines such as computer vision and computational biology for diverse tasks ranging from text-guided image generation to structure-guided protein design. Along this latter line of research, methods have recently been proposed for generating 3D molecules using equivariant graph neural networks (GNNs) within a DDPM framework. However, such methods are unable to learn important geometric and physical properties of 3D molecules during molecular graph generation, as they adopt molecule-agnostic and non-geometric GNNs as their 3D graph denoising networks, which negatively impacts their ability to effectively scale to datasets of large 3D molecules. In this work, we address these gaps by introducing the Geometry-Complete Diffusion Model (GCDM) for 3D molecule generation, which outperforms existing 3D molecular diffusion models by significant margins across conditional and unconditional settings for the QM9 dataset as well as for the larger GEOM-Drugs dataset. Importantly, we demonstrate that the geometry-complete denoising process GCDM learns for 3D molecule generation allows the model to generate realistic and stable large molecules at the scale of GEOM-Drugs, whereas previous methods fail to do so with the features they learn. Additionally, we show that extensions of GCDM can not only effectively design 3D molecules for specific protein pockets but also that GCDM's geometric features can effectively be repurposed to directly optimize the geometry and chemical composition of existing 3D molecules for specific molecular properties, demonstrating new, real-world versatility of molecular diffusion models. Our source code and data are freely available at //github.com/BioinfoMachineLearning/Bio-Diffusion.

This work proposes a decision-making framework for partially observable systems in continuous time with discrete state and action spaces. As optimal decision-making becomes intractable for large state spaces we employ approximation methods for the filtering and the control problem that scale well with an increasing number of states. Specifically, we approximate the high-dimensional filtering distribution by projecting it onto a parametric family of distributions, and integrate it into a control heuristic based on the fully observable system to obtain a scalable policy. We demonstrate the effectiveness of our approach on several partially observed systems, including queueing systems and chemical reaction networks.

In contrast to close-set scenarios that restore images from a predefined set of degradations, open-set image restoration aims to handle the unknown degradations that were unforeseen during the pretraining phase, which is less-touched as far as we know. In this work, we explicitly study this challenging problem and reveal its essence, i.e., the unidentified distribution shifts between test and training data. In recent, test-time adaptation emerges as a fundamental method to address this inherent disparities. Inspired by this, we propose a test-time degradation adaption framework for open-set image restoration, which involves three components, i.e., i) a pre-trained and degradation-agnostic diffusion model to generate clean images, ii) a test-time degradation adapter adapts the unknown degradations based on the input image during the testing phase, and iii) the adapter-guided image restoration guides the model through the adapter to produce the corresponding clean image. Through experiments on multiple degradations absent from the training data, we show that our method achieves comparable even better performance than those task-specific methods.

Collaborative Filtering (CF) recommender models highly depend on user-item interactions to learn CF representations, thus falling short of recommending cold-start items. To address this issue, prior studies mainly introduce item features (e.g., thumbnails) for cold-start item recommendation. They learn a feature extractor on warm-start items to align feature representations with interactions, and then leverage the feature extractor to extract the feature representations of cold-start items for interaction prediction. Unfortunately, the features of cold-start items, especially the popular ones, tend to diverge from those of warm-start ones due to temporal feature shifts, preventing the feature extractor from accurately learning feature representations of cold-start items. To alleviate the impact of temporal feature shifts, we consider using Distributionally Robust Optimization (DRO) to enhance the generation ability of the feature extractor. Nonetheless, existing DRO methods face an inconsistency issue: the worse-case warm-start items emphasized during DRO training might not align well with the cold-start item distribution. To capture the temporal feature shifts and combat this inconsistency issue, we propose a novel temporal DRO with new optimization objectives, namely, 1) to integrate a worst-case factor to improve the worst-case performance, and 2) to devise a shifting factor to capture the shifting trend of item features and enhance the optimization of the potentially popular groups in cold-start items. Substantial experiments on three real-world datasets validate the superiority of our temporal DRO in enhancing the generalization ability of cold-start recommender models. The code is available at //github.com/Linxyhaha/TDRO/.

In real-world applications, one often encounters ambiguously labeled data, where different annotators assign conflicting class labels. Partial-label learning allows training classifiers in this weakly supervised setting. While state-of-the-art methods already feature good predictive performance, they often suffer from miscalibrated uncertainty estimates. However, having well-calibrated uncertainty estimates is important, especially in safety-critical domains like medicine and autonomous driving. In this article, we propose a novel nearest-neighbor-based partial-label-learning algorithm that leverages Dempster-Shafer theory. Extensive experiments on artificial and real-world datasets show that the proposed method provides a well-calibrated uncertainty estimate and achieves competitive prediction performance. Additionally, we prove that our algorithm is risk-consistent.

Machine unlearning has emerged as a new paradigm to deliberately forget data samples from a given model in order to adhere to stringent regulations. However, existing machine unlearning methods have been primarily focused on classification models, leaving the landscape of unlearning for generative models relatively unexplored. This paper serves as a bridge, addressing the gap by providing a unifying framework of machine unlearning for image-to-image generative models. Within this framework, we propose a computationally-efficient algorithm, underpinned by rigorous theoretical analysis, that demonstrates negligible performance degradation on the retain samples, while effectively removing the information from the forget samples. Empirical studies on two large-scale datasets, ImageNet-1K and Places-365, further show that our algorithm does not rely on the availability of the retain samples, which further complies with data retention policy. To our best knowledge, this work is the first that represents systemic, theoretical, empirical explorations of machine unlearning specifically tailored for image-to-image generative models. Our code is available at //github.com/jpmorganchase/l2l-generator-unlearning.

Current models for event causality identification (ECI) mainly adopt a supervised framework, which heavily rely on labeled data for training. Unfortunately, the scale of current annotated datasets is relatively limited, which cannot provide sufficient support for models to capture useful indicators from causal statements, especially for handing those new, unseen cases. To alleviate this problem, we propose a novel approach, shortly named CauSeRL, which leverages external causal statements for event causality identification. First of all, we design a self-supervised framework to learn context-specific causal patterns from external causal statements. Then, we adopt a contrastive transfer strategy to incorporate the learned context-specific causal patterns into the target ECI model. Experimental results show that our method significantly outperforms previous methods on EventStoryLine and Causal-TimeBank (+2.0 and +3.4 points on F1 value respectively).

Social relations are often used to improve recommendation quality when user-item interaction data is sparse in recommender systems. Most existing social recommendation models exploit pairwise relations to mine potential user preferences. However, real-life interactions among users are very complicated and user relations can be high-order. Hypergraph provides a natural way to model complex high-order relations, while its potentials for improving social recommendation are under-explored. In this paper, we fill this gap and propose a multi-channel hypergraph convolutional network to enhance social recommendation by leveraging high-order user relations. Technically, each channel in the network encodes a hypergraph that depicts a common high-order user relation pattern via hypergraph convolution. By aggregating the embeddings learned through multiple channels, we obtain comprehensive user representations to generate recommendation results. However, the aggregation operation might also obscure the inherent characteristics of different types of high-order connectivity information. To compensate for the aggregating loss, we innovatively integrate self-supervised learning into the training of the hypergraph convolutional network to regain the connectivity information with hierarchical mutual information maximization. The experimental results on multiple real-world datasets show that the proposed model outperforms the SOTA methods, and the ablation study verifies the effectiveness of the multi-channel setting and the self-supervised task. The implementation of our model is available via //github.com/Coder-Yu/RecQ.

To provide more accurate, diverse, and explainable recommendation, it is compulsory to go beyond modeling user-item interactions and take side information into account. Traditional methods like factorization machine (FM) cast it as a supervised learning problem, which assumes each interaction as an independent instance with side information encoded. Due to the overlook of the relations among instances or items (e.g., the director of a movie is also an actor of another movie), these methods are insufficient to distill the collaborative signal from the collective behaviors of users. In this work, we investigate the utility of knowledge graph (KG), which breaks down the independent interaction assumption by linking items with their attributes. We argue that in such a hybrid structure of KG and user-item graph, high-order relations --- which connect two items with one or multiple linked attributes --- are an essential factor for successful recommendation. We propose a new method named Knowledge Graph Attention Network (KGAT) which explicitly models the high-order connectivities in KG in an end-to-end fashion. It recursively propagates the embeddings from a node's neighbors (which can be users, items, or attributes) to refine the node's embedding, and employs an attention mechanism to discriminate the importance of the neighbors. Our KGAT is conceptually advantageous to existing KG-based recommendation methods, which either exploit high-order relations by extracting paths or implicitly modeling them with regularization. Empirical results on three public benchmarks show that KGAT significantly outperforms state-of-the-art methods like Neural FM and RippleNet. Further studies verify the efficacy of embedding propagation for high-order relation modeling and the interpretability benefits brought by the attention mechanism.